BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15920.2
Length=1629
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312582 jgi|Araly1|312582|fgenesh1_pm.C_scaffold_1001362 1103 0.0
> Ahg312582 jgi|Araly1|312582|fgenesh1_pm.C_scaffold_1001362
Length=855
Score = 1103 bits (597), Expect = 0.0
Identities = 777/864 (90%), Gaps = 12/864 (1%)
Strand=Plus/Plus
Query 442 ATGTCGCAGGCTCCGAATCCAGAAGAAGAAGACGACACGATTGAAATCCGCGAGGTCTGG 501
|||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGTCGCAGGTTTCGAATCCAGAAGAAGAAGACGATACGATTGAAATCCGCGAGGTCTGG 60
Query 502 AACCATAACCTTGAACAAGAGATGGCTCTGATTGAACAATCCATCGACGATTTCCCTTAC 561
|||||||| |||||| ||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 61 AACCATAATCTTGAAGAAGAGATGGCTCTGATTGAACAAGCCATTGACGATTTCCCTTAC 120
Query 562 GTAGCCATGGACACAGAGTTCCCAGGAATCGTTTGCAAGACAGTAACGGCGAATCCAAAC 621
|| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 GTCGCCATGGACACAGAGTTCCCAGGAGTCGTTTGCAAGACAGTAACGGCGAATCCAAAC 180
Query 622 CCAAACCCATACTCTATACACTACGAATACAACTACGATACCTTGAAGGCGAACGTGAAT 681
|||||||| || | ||||||||||| ||||||||| ||||||||| |||| |||||
Sbjct 181 CCAAACCC-TA----A-ACACTACGAATTCAACTACGAAACCTTGAAGACGAATGTGAAC 234
Query 682 ATGCTCAAGTTGATTCAGCTCGGTCTCACCTTATCAGATGAGAAAGGAAACTTACCAACC 741
||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 235 ATGCTTAAGTTGATTCAGCTAGGTCTCACGTTATCAGATGAGAAAGGAAACTTACCAACC 294
Query 742 TGTGGAACCAACAAGCAATGCATCTGGCAATTCAATTTCAGAGAATTCAATGTCATATCC 801
|||||||| |||||||||||||||||||| ||||||||||||||||||||| ||| ||||
Sbjct 295 TGTGGAACTAACAAGCAATGCATCTGGCAGTTCAATTTCAGAGAATTCAATTTCAAATCC 354
Query 802 GACATGTTCGCCTTGGATTCCATCGAACTCCTCCGTAAGTCAGCCATCGATTTGGAGAAG 861
|||||||| ||| ||||||||||| ||||||| ||||||||| |||||||||||||||
Sbjct 355 GACATGTTTGCCATGGATTCCATCCAACTCCTGCGTAAGTCATACATCGATTTGGAGAAA 414
Query 862 AACAACGAATGCGGTGTAGACGCAAAGAGATTCGCAGAGCTTCTAATGGGTTCAGGAGTA 921
|||| ||||||||||||||| | | | ||||||| |||||||||||| |||||||||||
Sbjct 415 AACACCGAATGCGGTGTAGATTCGAGGCGATTCGCTGAGCTTCTAATGAGTTCAGGAGTA 474
Query 922 GTGCTAAACGATAAGATACATTGGGTGACATTCCATTGCGGATACGATTTTGGGTACTTG 981
||||| ||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||
Sbjct 475 GTGCTTAACGACAAGATACAGTGGGTGACATTCCATTGCGGATATGATTTTGGATACTTG 534
Query 982 CTGAAACTCTTGTCAGGGAAAGAATTGCCGGAGGAGATATCGGACTTCTTTGATCAGATG 1041
|||||||||||||| |||||||||||||||| |||| || | |||||||||||| ||
Sbjct 535 CTGAAACTCTTGTCCGGGAAAGAATTGCCGGCGGAGGCGTCCAAGTTCTTTGATCAGGTG 594
Query 1042 GAGAAG-TTTTTCCCGGTAGTGTATGATATCAAATACTTGATGGGATTCTG-TACTAACC 1099
||| | |||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 595 GAG-CGTTTTTTCCCGGTAGTGTATGATATCAAATACTTGATGGGATTCTGCGCCCCA-C 652
Query 1100 TCTATGGAGGTCTGGAGAAAATAGCGGAGTTACTTGGTGTTAAACGAGTTGGGATTTCTC 1159
|| ||||| |||||| || | |||| | ||||||||||||||| |||||||||||||||
Sbjct 653 TCCATGGAAGTCTGGGGAGAGTAGCAAAATTACTTGGTGTTAAAAGAGTTGGGATTTCTC 712
Query 1160 ACCAGGCTGGATCAGATAGCTTGTTAACGTTGCGTACTTTCATCAAGATGAAAGAGTTCT 1219
|||||||||||||||||||||||||||| |||||| | |||| ||||||||||||| |||
Sbjct 713 ACCAGGCTGGATCAGATAGCTTGTTAACATTGCGTGCCTTCAACAAGATGAAAGAGATCT 772
Query 1220 TCTTCACTGGTTC-CTTGCTCAAGTATTCTGGTTTTTTGTTTGGATTAGATAATCCTCGG 1278
||||||||||||| || | ||| || ||||||||||||| |||||||||||||||||||
Sbjct 773 TCTTCACTGGTTCTCTGGA-CAAATACTCTGGTTTTTTGTATGGATTAGATAATCCTCGG 831
Query 1279 TTGCTCACTGGATCCaaaaattaa 1302
|||||||||||| |||||||||||
Sbjct 832 TTGCTCACTGGAACCAAAAATTAA 855
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61058662735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5