BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15930.2
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312583 jgi|Araly1|312583|fgenesh1_pm.C_scaffold_1001363 544 5e-154
Ahg906969 jgi|Araly1|906969|Al_scaffold_0002_50 399 1e-110
Ahg320951 jgi|Araly1|320951|fgenesh1_pm.C_scaffold_4001008 390 7e-108
> Ahg312583 jgi|Araly1|312583|fgenesh1_pm.C_scaffold_1001363
Length=363
Score = 544 bits (294), Expect = 5e-154
Identities = 342/365 (94%), Gaps = 4/365 (1%)
Strand=Plus/Plus
Query 190 ATGGACTTAATGACTGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTT 249
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGACTTAATGACTGCTTTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTT 60
Query 250 GTTCGTGGTCTCCATGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTCGT-TGT 308
|| |||||||| |||||| ||||||||||||||||||||||||||||||| ||| | |||
Sbjct 61 GTCCGTGGTCTTCATGAGAGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAGCTC-TGTGT 119
Query 309 CTTGGCTGAAGACTGCAACCAGCCTGATTATGTCAAGCTTGTGAAGGCTCTCTGTGCTGA 368
|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 120 CTTGGCTGAAGACTGCAACCAGCCTGATTACGTCAAGCTTGTTAAAGCTCTCTGTGCTGA 179
Query 369 TCAC-GAAGTCAGGTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTC 427
|||| | | |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCACAGCA-TCAGTTTGCTTACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTC 238
Query 428 TCTGCAAGATTGATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTG 487
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 239 TCTGCAAGATTGATTCTGAGGGCAATGCCAGGAAGGTTGTTGGGTGCTCATGTCTTGTTG 298
Query 488 TCAAGGACTTCGGCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTGCTTCTC 547
||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||| ||| |
Sbjct 299 TCAAGGACTACGGCGAGGAGACAACTGCCCTCAATATTGTCAAGAAGCATATTGATTCCC 358
Query 548 AATAA 552
|||||
Sbjct 359 AATAA 363
> Ahg906969 jgi|Araly1|906969|Al_scaffold_0002_50
Length=423
Score = 399 bits (216), Expect = 1e-110
Identities = 342/402 (85%), Gaps = 11/402 (3%)
Strand=Plus/Plus
Query 144 TGTTGTTCCTCCCCCCGTTGCTGAGCCAGCGGCCATCCCAGAGGACATGGACTTAATGAC 203
|||||||||| || ||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 18 TGTTGTTCCT---CCGGTTGCTGAGGCAGCAGTGATCCCAGAGGACATGGATTTAATGAC 74
Query 204 TGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTCCA 263
|||| ||||||||| |||||||| || |||||||||||||||||||||||||||||||
Sbjct 75 TGCAGCGGAGTTGACAATTAGGAAATCTTGTGCTTATGGTGGTGTTGTTCGTGGTCTCCA 134
Query 264 TGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTC-GTTGTCTTGGCTGAAGACT 322
||| | |||||||||||||||||||||| ||||| ||| || |||||||||||||| |
Sbjct 135 TGAAAGCACTAAGCTTATTGAGAAGCGTGTTGCTCAGCTCTGT-GTCTTGGCTGAAGATT 193
Query 323 GCAACCAGCCTGATTATGTCAAGCTTGTGA-AGGCTCTCTGTGCTGATCACGA-AGTCAG 380
||||||| ||||||||||||||||| || | || |||| || |||| ||| | | |||
Sbjct 194 GCAACCAACCTGATTATGTCAAGCTGGTTACAG-CTCTTTGCACTGACCACAACA-TCAA 251
Query 381 GTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTCTCTGCAAGATTGA 440
||||| || ||||| |||||||| ||||| ||||||||||||||||| |||||| ||||
Sbjct 252 TTTGCTTACGGTTCCCAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTTTGCAAGCTTGA 311
Query 441 TTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAGGACTT-CG 499
||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 312 TTCAGAGGGCAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAGTCAAGGA-TTACG 370
Query 500 GCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTG 541
| |||||||| ||||| || | || ||||| |||||| |||
Sbjct 371 GTGAGGAGACGACTGCACTAAACATTGTCAAGAAGCATCTTG 412
> Ahg320951 jgi|Araly1|320951|fgenesh1_pm.C_scaffold_4001008
Length=363
Score = 390 bits (211), Expect = 7e-108
Identities = 300/343 (87%), Gaps = 6/343 (2%)
Strand=Plus/Plus
Query 202 ACTGCATTGGAGTTGACTCTTAGGAAAGCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTC 261
||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 13 ACTGCATTGGAGTTGACAGTAAGGAAATCTCGTGCTTATGGTGGTGTTGTTCGTGGTCTC 72
Query 262 CATGAGTGTGCTAAGCTTATTGAGAAGCGTGTGGCTCAACTC-GTTGTCTTGGCTGAAGA 320
||||| | ||||||||||| ||||||||||| ||||| ||| || ||||||||||||||
Sbjct 73 CATGAAAGCGCTAAGCTTATCGAGAAGCGTGTTGCTCAGCTCTGT-GTCTTGGCTGAAGA 131
Query 321 CTGCAACCAGCCTGATTATGTCAAGCTTGTGAAGGCTCTCTGTGCTGATCAC-GAAGTCA 379
|||||||| ||||||||||||||||| || || ||||| |||||||| ||| | | |||
Sbjct 132 TTGCAACCAACCTGATTATGTCAAGCTGGTTAAAGCTCTTTGTGCTGACCACAGCA-TCA 190
Query 380 GGTTGCTAACAGTTCCAAGTGCCAAGACCCTTGGCGAATGGGCTGGTCTCTGCAAGATTG 439
|||||| || |||||||||||||| ||||| ||||||||||||||||| ||||||||||
Sbjct 191 AGTTGCTTACGGTTCCAAGTGCCAAAACCCTCGGCGAATGGGCTGGTCTTTGCAAGATTG 250
Query 440 ATTCTGAGGGTAATGCCAGGAAGGTTGTTGGATGCTCATGTCTTGTTGTCAAGGACTT-C 498
|||| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| || |
Sbjct 251 ATTCAGAGGGAAATGCGAGGAAGGTTGTTGGATGCTCATGTCTTGTAATCAAGGA-TTAC 309
Query 499 GGCGAGGAGACAACTGCCCTCAGTATCGTCAATAAGCATATTG 541
|| |||||||||||||| || | || ||||| |||||| |||
Sbjct 310 GGTGAGGAGACAACTGCTCTAAACATTGTCAAGAAGCATCTTG 352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30498333600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5