BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15950.1
Length=1401
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471794 jgi|Araly1|471794|fgenesh2_kg.1__1748__AT1G15950.1 2030 0.0
> Ahg471794 jgi|Araly1|471794|fgenesh2_kg.1__1748__AT1G15950.1
Length=1303
Score = 2030 bits (1099), Expect = 0.0
Identities = 1243/1311 (95%), Gaps = 16/1311 (1%)
Strand=Plus/Plus
Query 35 AGCATTCATAGTCTCTCGAAAGCC-TCTTTTCAGAACCGAAG--C-T-CTTT--ACTTTC 87
|||||||||||||||||||||||| |||| ||||| ||||| | | |||| | ||||
Sbjct 1 AGCATTCATAGTCTCTCGAAAGCCTTCTTGCCAGAAACGAAGCTCTTACTTTCGAGTTTC 60
Query 88 GTCCACCGGGAAATATGCCAGTCGACGTAGCCTCACCGGCCGGAAAAACCGTCTGCGTCA 147
| ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||
Sbjct 61 GACCACCGGGAAATATGCCAGTCGACGAAGCATCACCGGCCGGAAAAACAGTCTGCGTCA 120
Query 148 CCGGAGCTGGTGGATACATCGCTTCTTGGATTGTTAAGATACTTCTCGAGAGAGGTTACA 207
||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 121 CCGGAGCAGGTGGTTACATCGCTTCTTGGATTGTTAAGATACTTCTGGAGAGAGGTTACA 180
Query 208 CAGTCAAAGGAACCGTACGGAATCCAGATGATCCGAAGAACACACATTTGAGAGAACTAG 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CAGTCAAAGGAACCGTACGGAATCCAGATGATCCGAAGAACACACATTTGAGAGAACTAG 240
Query 268 AAGGAGGAAAGGAGAGACTGATTCTGTGCAAAGCAGATCTTCAGGACTACGAGGCTCTTA 327
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 241 AAGGAGCAAAGGAGAGACTGATTCTGTGCAAAGCAGATCTTCAGGACTACGAGGCTCTCA 300
Query 328 AGGCGGCGATTGATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCTGTCACCGACGATC 387
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 AGGCGGCGATTGATGGTTGCGACGGCGTCTTTCACACGGCTTCTCCGGTCACCGACGATC 360
Query 388 CGGAACAAATGGTGGAGCCGGCCGTGAATGGAGCCAAGTTTGTAATTAATGCTGCGGCTG 447
|||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||
Sbjct 361 CGGAACAAATGGTGGAGCCGGCAGTGAACGGAGCCAAGTTTGTAATCAATGCTGCGGCTG 420
Query 448 AGGCCAAGGTCAAGCGCGTGGTCATCACCTCCTCCATTGGTGCCGTCTACATGGACCCGA 507
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 421 AAGCCAAGGTCAAGCGCGTGGTCATCACCTCCTCCATTGGTGCCGTTTACATGGACCCGA 480
Query 508 ACCGTGACCCTGAGGCTGTCGTTGACGAAAGTTGTTGGAGTGATCTTGACTTCTGCAAAA 567
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 481 ACCGTGACCCTGAGGCTGTCGTTGACGAAAGTTGTTGGAGTGATCTTGACTTCTGCAAGA 540
Query 568 ACACCAAGAATTGGTATTGTTACGGCAAGATGGTGGCGGAACAAGCGGCGTGGGAGACAG 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 ACACCAAGAATTGGTATTGTTACGGCAAGATGGTGGCGGAACAAGCGGCGTGGGAGACGG 600
Query 628 CAAAGGAGAAAGGTGTTGACTTGGTGGTGTTGAATCCGGTGCTGGTTCTTGGACCGCCGT 687
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CGAAGGAGAAAGGTGTTGACTTGGTGGTGTTGAATCCGGTGCTGGTTCTTGGACCGCCGT 660
Query 688 TACAGCCGACGATCAACGCCAGTCTTTACCACGTCCTCAAATATCTAACCGGCTCGGCTA 747
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||
Sbjct 661 TACAGCCGACGATCAACGCCAGCCTTTACCACGTCCTTAAATATCTAACCGGCTCAGCTA 720
Query 748 AGACTTATGCTAATTTGACTCAAGCTTATGTGGATGTTCGCGATGTCGCGCTGGCTCATG 807
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 721 AGACTTATGCTAATTTGACTCAGGCTTATGTGGATGTTCGCGATGTCGCGCTGGCTCATG 780
Query 808 TTCTGGTCTATGAGGCACCCTCGGCCTCCGGACGTTATCTCCTAGCCGAGAGTGCTCGCC 867
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 781 TTCTGGTCTATGAGGCACCGTCGGCCTCCGGACGTTATCTCCTAGCCGAGAGCGCTCTTC 840
Query 868 ACCGCGGGGAAGTTGTTGAGATTCTGGCTAAGCTATTCCCGGAGTATCCTCTTCCGACCA 927
|||| || |||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 841 ACCGTGGCGAAGTTGTTGAGATTCTGGCTAAGTTATTCCCGGAGTATCCACTTCCGACCA 900
Query 928 AGTGCAAGGACGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAGAAGATTA 987
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 901 AGTGCAAGGATGAGAAGAACCCTAGAGCCAAGCCATACAAATTCACTAACCAAAAGATTA 960
Query 988 AGGACTTAGGCTTAGAGTTCACTTCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCT 1047
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 961 AAGACTTGGGCTTAGAGTTCACATCCACCAAGCAAAGCCTCTACGACACAGTCAAGAGCT 1020
Query 1048 TACAAGAGAAAGGCCATCTTGctcctcctcctcctcctcctTCAGCATCGCAAGAATCCG 1107
||||||||||||||||||||||||||||||||||| || | ||||||||| |||||
Sbjct 1021 TACAAGAGAAAGGCCATCTTGCTCCTCCTCCTCCT--TCA---A-CATCGCAAGGATCCG 1074
Query 1108 TGGAAAATGGCATTAAGATCGGGTCTTGAAAAGCTTATTAATTCCCTCAAGTATCCCCCT 1167
| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 1075 TCGAAAATGGCATTAAGATCGGGTCTTGAAAAACTTATTTATTCCCTCAAGTATCCCCCT 1134
Query 1168 TAAGTATCCTTAACCATTGAAGTTGCTTTTGTTTGTTGTCTCTGGTTATGTGAAACCTCT 1227
||||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||
Sbjct 1135 TAAGTATCCTTAACCATTGAAATTGCTTTTGTTTTTTGTCTCTGGTTGTGTGAAACCTCT 1194
Query 1228 GTTTCAATAT-GTCTCGTCTGGTTATGAATCTGTACACTCAGTTCTTTGGCCAAACCGTT 1286
||||||| || |||| ||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 1195 GTTTCAA-ATTGTCTTGTCTGGTTATGAATCTGTATA-TCAGTTCTTTAGCCAAACCGTT 1252
Query 1287 TGATGGATTTTGTAGTCAAGTCTTCATGTTTGATCTATGTAATAGATTACA 1337
||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1253 TGATGGATTTTGTAGACAAGGCTTCATGTTTGATCTATGTAATAGATTACA 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52374086875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5