BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15960.1
Length=2137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg927413 jgi|Araly1|927413|scaffold_202974.1 1447 0.0
Ahg920502 jgi|Araly1|920502|scaffold_101783.1 1005 0.0
Ahg927384 jgi|Araly1|927384|scaffold_202945.1 878 0.0
Ahg471794 jgi|Araly1|471794|fgenesh2_kg.1__1748__AT1G15950.1 599 3e-170
Ahg930903 jgi|Araly1|930903|scaffold_303360.1 300 3e-80
> Ahg927413 jgi|Araly1|927413|scaffold_202974.1
Length=1621
Score = 1447 bits (783), Expect = 0.0
Identities = 1278/1515 (84%), Gaps = 42/1515 (3%)
Strand=Plus/Plus
Query 70 CATAGAAAACTCTGATTCTAATCAGATTCTTGTCCCTGAGAAAAAGAGCTGGAAAAACTT 129
||| || ||||||||||||||||||||| ||||| ||||||| ||||||||||| || ||
Sbjct 80 CATCGAGAACTCTGATTCTAATCAGATTATTGTCTCTGAGAAGAAGAGCTGGAAGAATTT 139
Query 130 CTTCTCATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACTT 189
|||| | |||||||||||||| |||||||| ||||| || || |||||||||||||| ||
Sbjct 140 CTTCGCTTACTTAGGCCCTGGTTTTCTTGTTTCAATCGCATATATTGATCCTGGAAATTT 199
Query 190 TGAAACTGATCTGCAATCAGGAGCTCAATACAAGTATGAGTTACTCTGGATCATATTGGT 249
||| |||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 200 TGAGACTGATCTGCAATCTGGAGCACAATACAAGTATGAGTTACTTTGGATCATATTGGT 259
Query 250 GGCATCATGTGCAGCTTTAGTGATTCAATCTCTGGCTGCAAATCTTGGTGTTGTCACAGG 309
||| || ||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 260 GGCCTCGTGTGCAGCTTTGGTGATTCAATCTCTGGCTGCTAATCTTGGTGTTGTCACAGG 319
Query 310 AAAGCACTTAGCAGAGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATG 369
||| || || || ||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 320 AAAACATTTGGCTGAGCAATGTAGAGCAGAGTACTCCAAAGTTCCAAACTTTATGTTATG 379
Query 370 GGTAGTTGCTGAAATCGCTGTAGTAGCTTGTGATATTCCAGAAGTAATTGGAACAGCATT 429
||| ||||| ||||| || ||||| |||||||| || || ||||| || |||||||| ||
Sbjct 380 GGTCGTTGCAGAAATTGCAGTAGTCGCTTGTGACATACCTGAAGTTATCGGAACAGCTTT 439
Query 430 TGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTCTTCTCACAGGACTT-A 488
|||| | |||||||| || | || ||||| ||||||||||||||| | ||||| ||| |
Sbjct 440 TGCTCTGAACATGCTCTTTAGCATACCGGTGTGGATTGGTGTTCTTTTGACAGG-CTTCA 498
Query 489 GTACAT-TGATTCTTCTAGCACTTCAACAATATGGGATTAGAAAGCTCGAGTTCTTGATC 547
|||| | |||||||||| || |||||| |||| ||| | |||||| | |||||||||||
Sbjct 499 GTAC-TCTGATTCTTCTCGCGCTTCAAAAATACGGGGTGAGAAAGTTGGAGTTCTTGATT 557
Query 548 GCTTTTCTTGTGTTCACCATTGCCCTATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCA 607
|| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 558 GCGTTTCTTGTGTTCACAATTGCTATATGCTTCTTTGTTGAGCTTCATTACTCAAAGCCA 617
Query 608 GACCCAAAAGAAGTCCT-CTATGGTCTCTTTGTTCCTCAG-TTGAAGGGTAATGGTGCAA 665
|||||| ||||||||| | ||||||||||||||||||| || |||| ||||||||||
Sbjct 618 GACCCAGGAGAAGTCCTAC-ATGGTCTCTTTGTTCCTCAACTTAAAGGA-AATGGTGCAA 675
Query 666 CTGGT-TTAGCGATATCTCTCCTCGGTGCCATGGTTATGCCGCACAATCTCTTTCTCCAC 724
||||| || || || ||| | ||||| ||||||||||||||||| |||||||| ||||||
Sbjct 676 CTGGTCTT-GCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCATAATCTCTTCCTCCAC 734
Query 725 TCAGCTTTAGTTCTCTCTAGGAAAATTCCTCGTTC-AGTAACCGGCATCAAGGAAGCTTG 783
|| || || |||||||| |||||||| |||||||| | | | || ||||||||||||||
Sbjct 735 TCGGCCTTGGTTCTCTCCAGGAAAATCCCTCGTTCCACTT-CTGGTATCAAGGAAGCTTG 793
Query 784 TC-GGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCATTTCTCATCAATGTCT 842
| ||| ||||||||||||||||||||| || || |||||||| |||||||| |||||||
Sbjct 794 -CAGGTTTTACTTGATAGAAAGCGGATTGGCTCTAATGGTGGCCTTTCTCATAAATGTCT 852
Query 843 CTGTGATATCAGTGAGTGGTGCAGTTTGTAATGCCTC-AGATTTGAGTCCAGAAGATCGA 901
||||||||||||| ||||| || |||||||||||| | | | || || || |||||||||
Sbjct 853 CTGTGATATCAGTAAGTGGGGCTGTTTGTAATGCCCCTA-ACTTAAGCCCTGAAGATCGA 911
Query 902 GCTAGTTGCCAAGATTTGGACTTAAACAAAGCTTCATTTCTGCTACGTAACGTTGTGGGT 961
|||| ||| | ||||||||||||||||| ||||| ||||||||||| |||||||||||
Sbjct 912 GCTAATTGTGAGGATTTGGACTTAAACAAGGCTTCGTTTCTGCTACGGAACGTTGTGGG- 970
Query 962 AAA-TGGAGCTCAAAGCTATTTGCAATTGCG-TTGCTTGCTTCCGGTCAGAGTTCAACCA 1019
||| ||||||||||||||||||||||| ||| || ||||| || |||||||| || || |
Sbjct 971 AAAGTGGAGCTCAAAGCTATTTGCAATAGCGCTT-CTTGCCTCTGGTCAGAGCTCGACGA 1029
Query 1020 TAACCGGAACATATGCTGGACAATACGTTATGCAGGGGTTTCTTGATTTAAGACTAGAAC 1079
|||| ||||| ||||||||||||||||| |||||||| ||||||||| ||||||| || |
Sbjct 1030 TAACAGGAACTTATGCTGGACAATACGTAATGCAGGGCTTTCTTGATCTAAGACTCGAGC 1089
Query 1080 CATGGCTCAGAAACTTCCTAACCAGATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTT 1139
|||||||||||||||| ||||| |||||||| ||||||||||| ||| | || ||||||
Sbjct 1090 CATGGCTCAGAAACTTACTAACAAGATGCTTAGCTATAATCCCGAGTCTAATTGTTGCTC 1149
Query 1140 TGATAGGTGGCTCAGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCT 1199
| || || || ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1150 TCATTGGCGGTTCAGCTGGAGCTGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCT 1209
Query 1200 TTGAACTCCCATTTGCTTTAGTCCCACTTCTCAAATTCACAAGCAGTAAAACCAAAATGG 1259
|||| ||||| || || || || || |||||||| ||||| ||| | |||||||| ||||
Sbjct 1210 TTGAGCTCCCGTTCGCGTTGGTTCCTCTTCTCAAGTTCACTAGCTGCAAAACCAAGATGG 1269
Query 1260 GCTCACACGCCAATTCACTTGTGATTTCATCGGTGACTTGGATAATTGGTGGACTTATT- 1318
| ||||||| ||| || | | ||||||| | |||||||| | |||||||| ||| |
Sbjct 1270 GTTCACACGTCAACCCAATGGCGATTTCAGCTTTGACTTGGGTCATTGGTGGT-TTAATC 1328
Query 1319 ATGGGTATAAACATTTACTATCTTGTAAGCAGCTT-CATCAAGTTGCTTCTCCATAGTCA 1377
||||| |||||||| |||||||| |||||||| || |||||| ||||| ||||||||||
Sbjct 1329 ATGGGAATAAACATATACTATCTAGTAAGCAG-TTACATCAAACTGCTTATCCATAGTCA 1387
Query 1378 CATGAACCTTGTAGC-CATTGTTTTCT-TAGGAGTTCTTGGATTCTCAGGCATTGC-CAC 1434
||||| |||| | | | || |||| | ||| ||||||| ||| ||| |||||| | |
Sbjct 1388 TATGAAGCTTGCC-CTCGTCGTCTTCTGT-GGAATTCTTGGGTTCGCAGTCATTGCTCTC 1445
Query 1435 TTACTTAGCTGCCATCAG-TTACCTTGTCCTCCGTAAAAACAGAGA-GTCCTCGTCCACA 1492
| | ||||||||||| || |||||||||| |||| ||||||||||| | || | ||| |
Sbjct 1446 T-ATTTAGCTGCCAT-AGCTTACCTTGTCTTCCGGAAAAACAGAGAAG-CCAC-TCCTC- 1500
Query 1493 CATTTCCTAGACTTCA-GTAACTCTCAGACCGAGGAAACACTTCCTAGAGAAGATATTGC 1551
|| | | | | ||| | ||||| || | | ||| |||||||| ||| | || ||||
Sbjct 1501 --TT-CTT-G-CATCAAGAAACTCACAAAATGTGGAGACACTTCCAAGACAGGACATTGT 1555
Query 1552 CAACATGCAGTTACC 1566
|||||||||||||||
Sbjct 1556 CAACATGCAGTTACC 1570
> Ahg920502 jgi|Araly1|920502|scaffold_101783.1
Length=1006
Score = 1005 bits (544), Expect = 0.0
Identities = 594/619 (96%), Gaps = 0/619 (0%)
Strand=Plus/Plus
Query 865 AGTTTGTAATGCCTCAGATTTGAGTCCAGAAGATCGAGCTAGTTGCCAAGATTTGGACTT 924
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 341 AGTTTGTAATGCCTCAGATTTGAGTCCAGAAGATCGAGCAAGTTGCCAAGATTTGGACTT 400
Query 925 AAACAAAGCTTCATTTCTGCTACGTAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGC 984
|||||||||||||| |||||| || || ||||| | ||||||||||||||||||||||||
Sbjct 401 AAACAAAGCTTCATCTCTGCTGCGGAATGTTGTAGATAAATGGAGCTCAAAGCTATTTGC 460
Query 985 AATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATA 1044
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 461 AATTGCGTTGCTTGCTTCCGGTCAGAGTTCAACAATAACCGGAACATATGCTGGACAATA 520
Query 1045 CGTTATGCAGGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTCCTAACCAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 521 CGTTATGCAGGGGTTTCTTGATTTAAGACTAGAACCATGGCTCAGAAACTTGCTAACAAG 580
Query 1105 ATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTGGCTCAGCTGGAGCCGG 1164
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 581 ATGCTTGGCTATAATCCCAAGTTTGATCGTTTCTCTGATAGGTGGCTCAGCTGGAGCCGG 640
Query 1165 AAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGTCCC 1224
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 641 AAAGTTAATCATCATTGCGTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGTACC 700
Query 1225 ACTTCTCAAATTCACAAGCAGTAAAACCAAAATGGGCTCACACGCCAATTCACTTGTGAT 1284
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 701 ACTTCTCAAATTCACAAGCAGCAAAACCAAAATGGGCTCACACGCCAATTCACTTGTGAT 760
Query 1285 TTCATCGGTGACTTGGATAATTGGTGGACTTATTATGGGTATAAACATTTACTATCTTGT 1344
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 761 TTCATCTGTGACTTGGATCATTGGTGGACTTATTATGGGTATAAACATTTACTATCTAGT 820
Query 1345 AAGCAGCTTCATCAAGTTGCTTCTCCATAGTCACATGAACCTTGTAGCCATTGTTTTCTT 1404
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 821 AAGCAGCTTCATCAAGCTGCTTCTCCATAGTCACATGAACCTTGCAGCCATTGTTTTCTT 880
Query 1405 AGGAGTTCTTGGATTCTCAGGCATTGCCACTTACTTAGCTGCCATCAGTTACCTTGTCCT 1464
|||| |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 881 AGGACTTCTTGGATTCTCAGGCATTGCCATTTACTTAGCAGCCATTGGTTACCTTGTCCT 940
Query 1465 CCGTAAAAACAGAGAGTCC 1483
|||||||||||||||||||
Sbjct 941 CCGTAAAAACAGAGAGTCC 959
Score = 270 bits (146), Expect = 3e-71
Identities = 164/173 (95%), Gaps = 0/173 (0%)
Strand=Plus/Plus
Query 16 GATGGCGGCTGAAACAGCAAGTGGCAGCAACAGAAGTATCTCAAACTCTCCTCTCATAGA 75
|||||||| || ||||||||||||| ||||||||| | |||||||||||||||||||||
Sbjct 20 GATGGCGGGTGCAACAGCAAGTGGCGGCAACAGAACTTTCTCAAACTCTCCTCTCATAGC 79
Query 76 AAACTCTGATTCTAATCAGATTCTTGTCCCTGAGAAAAAGAGCTGGAAAAACTTCTTCTC 135
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 80 AAACTCTGATTCTAATCAGATTGTTGTCCCTGAGAAGAAGAGCTGGAAAAACTTCTTCTC 139
Query 136 ATACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACT 188
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GTACTTAGGCCCTGGATTTCTTGTCTCAATTGCTTACATTGATCCTGGAAACT 192
Score = 219 bits (118), Expect = 9e-56
Identities = 140/151 (93%), Gaps = 0/151 (0%)
Strand=Plus/Plus
Query 264 CTTTAGTGATTCAATCTCTGGCTGCAAATCTTGGTGTTGTCACAGGAAAGCACTTAGCAG 323
|||| |||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct 193 CTTTGGTGATTCAATCTCTCGCTGCAAATCTCGGTGTTGTCACTGGAAAGCACTTAGCAG 252
Query 324 AGCATTGTAGAGCTGAGTACTCCAAGGTTCCAAACTTTATGTTATGGGTAGTTGCTGAAA 383
||||||| ||| |||| |||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 253 AGCATTGCAGAACTGAATACTCCAAAGTTCCAAACTTTATGTTATGGGTAGTTGCAGAAA 312
Query 384 TCGCTGTAGTAGCTTGTGATATTCCAGAAGT 414
|| |||||||||||||||| |||||||||||
Sbjct 313 TCACTGTAGTAGCTTGTGACATTCCAGAAGT 343
> Ahg927384 jgi|Araly1|927384|scaffold_202945.1
Length=1423
Score = 878 bits (475), Expect = 0.0
Identities = 889/1086 (82%), Gaps = 40/1086 (4%)
Strand=Plus/Plus
Query 414 TAATTGGAACAGCATTTGCTTTAAACATGCTATTCAATATCCCGGTTTGGATTGGTGTTC 473
|||| ||||| || |||||| | |||||||| || | || ||||| ||||||||||| |
Sbjct 268 TAATCGGAACCGCTTTTGCTCTGAACATGCTCTTTAGCATGCCGGTATGGATTGGTGTGC 327
Query 474 TTCTCACAGGACTT-AGTACAT-TGATTCTTCT-AGCACTTCAACAATATGGGATTAGAA 530
||| ||||| ||| ||||| | || ||||||| | | ||||| |||| ||| | ||||
Sbjct 328 CTCTGACAGG-CTTAAGTAC-TATGGTTCTTCTCA-AAATTCAAAAATACGGGGTGAGAA 384
Query 531 AGCTCGAGTTCTTGATCGCTTTTCTTGTGTTCACCATTGCCCTATGCTTCTTTGTTGAGC 590
|| | ||||||||||| || ||||||| ||||| || || || |||||||||||||||
Sbjct 385 AGTTGGAGTTCTTGATTGCAATTCTTGTATTCACAATGGCTATAAGCTTCTTTGTTGAGC 444
Query 591 TTCATTACTCAAAGCCAGACCCAAAAGAAGTCCT-CTATGGTCTCTTTGTTCCTCAGTTG 649
|||| ||||||||||| |||||| |||| |||| | ||||||||||||||||||| ||
Sbjct 445 TTCACTACTCAAAGCCCGACCCAGGAGAAATCCTAC-ATGGTCTCTTTGTTCCTCAACTG 503
Query 650 AAGGGTAATGGTGCAACTGGTTTAGCGATATCTCTCCTCGGTGCCATGGTTATGCCGCAC 709
|| || ||||||||||||||| | || || ||| | ||||| |||||||||||||||||
Sbjct 504 AAAGGAAATGGTGCAACTGGTCTCGCAATCTCTTTGCTCGGAGCCATGGTTATGCCGCAT 563
Query 710 AATCTCTTTCTCCACTCAGCTTTAGTTCTCTCTAGGAAA-ATTCCTCGTT-CAGTAACCG 767
|||||||| |||||||| || || |||||||||| |||| || ||||||| || | || |
Sbjct 564 AATCTCTTCCTCCACTCGGCCTTGGTTCTCTCTA-GAAATATCCCTCGTTCCACT-ACTG 621
Query 768 GCATCAAGGAAGCTTGTC-GGTATTACTTGATAGAAAGCGGATTAGCACTTATGGTGGCA 826
|||||||| ||||||| | ||| ||||||||||||||||||||| || || |||||||||
Sbjct 622 GCATCAAGAAAGCTTG-CAGGTTTTACTTGATAGAAAGCGGATTGGCTCTAATGGTGGCA 680
Query 827 TTTCTCATCAATGTCTCTGTGATATCAGTGAGTGGTGCAGTTTGTAATGCCTCAG-ATTT 885
|||||||| || ||||||||||||||||| |||||||| |||||||||||| | | | ||
Sbjct 681 TTTCTCATAAACGTCTCTGTGATATCAGTAAGTGGTGCTGTTTGTAATGCC-CCGAACTT 739
Query 886 GAGTCCAGAAGATCGAGCTAGTTGCCAAG-ATTTGGACTTAAACAAAGCTTCATTTCTGC 944
|| || ||||||||||||| ||| || |||||||||||||||| ||||| |||||||
Sbjct 740 AAGCCCTGAAGATCGAGCTAATTG-TGAGAATTTGGACTTAAACAAGGCTTCGTTTCTGC 798
Query 945 TACGTAACGTTGTGGGTAAATGGAGCTCAAAGCTATTTGCAATTGCG-TTGCTTGCTTCC 1003
| || || ||| |||| ||||||||||||||||||||||| |||||| || ||||||||
Sbjct 799 TCCGGAATGTTTTGGGGAAATGGAGCTCAAAGCTATTTGCGATTGCGCTT-CTTGCTTCT 857
Query 1004 GGTCAGAGTTCAACCATAACCGGAACATATGCTGGACAATACGTTATGCAGGGGTTTCTT 1063
|||||||| || || ||||| ||||| ||||||||||||||| | ||||| || ||||||
Sbjct 858 GGTCAGAGCTCGACGATAACAGGAACTTATGCTGGACAATACATAATGCAAGGATTTCTT 917
Query 1064 GATTTAAGACTAGAA-CCATGGCTCAGAAACTTCCTAACCA-GATGCTTGGCTATAATCC 1121
|| ||| ||| || ||||||||||||||||| |||| || |||| || ||||||||||
Sbjct 918 GACCTAAAACT-CAAGCCATGGCTCAGAAACTTACTAA-CACGATGTTTAGCTATAATCC 975
Query 1122 CAAGTTTGATCGTTGCTTTGATAGGTGGCTCAGCTGGAGCCGGAAAGTTAATCATCATTG 1181
| ||| | |||||| || | || ||||| || ||||||||||||||||||||||||||||
Sbjct 976 CGAGTCTAATCGTTTCTCTCATTGGTGGTTCTGCTGGAGCCGGAAAGTTAATCATCATTG 1035
Query 1182 CCTCGATGATCTTATCCTTTGAACTCCCATTTGCTTTAGT-CCCACTTCTC-AAATTCAC 1239
||||||||||||| |||||||| ||||| || || | || ||| || || ||||| ||
Sbjct 1036 CCTCGATGATCTTGTCCTTTGAGCTCCCGTTCGCGCTGGTTCCC-CT-CTTGAAATTTAC 1093
Query 1240 AAGCAGTAAAACCAAAATGGGCTCACACGCCAATTCACT-TGTGATTTCATCGGTGACTT 1298
|||| | |||||||| ||||| ||||||| ||| ||| | || ||| || | ||||||
Sbjct 1094 AAGCTGCAAAACCAAGATGGGTTCACACGTCAACTCAATCTG-GATCACAGCTTTGACTT 1152
Query 1299 GGATAATTGG-TGGACTTATTATGGGTATAAACATTTACTATCTTGTAAGCAGCTTCATC 1357
|||| ||||| | ||| || ||||| |||||||| |||||| | |||| ||| ||||||
Sbjct 1153 GGATTATTGGATT-ACTCATCATGGGAATAAACATATACTATATAGTAACCAGTTTCATC 1211
Query 1358 AAGTTGCTTCTCCATAGTCACATGAACCTTGTAGCCATTGTTTTCT-TAGGAGTTCTTGG 1416
||| |||||||||||||||| ||||| ||||| ||| | | |||| | ||| || ||||
Sbjct 1212 AAGCTGCTTCTCCATAGTCATATGAAGCTTGTCGCCGTCATCTTCTGT-GGAATTATTGG 1270
Query 1417 ATTCTCAGGCATTGCCA-CTTACTTAGC-TGCCATCAG-TTACCTTGTCCTCCGTAAAAA 1473
||| |||| ||||| | || | ||||| | |||| || |||||||||| | | |||||
Sbjct 1271 GTTCGCAGGTATTGCTATCT-ATTTAGCGT-CCAT-AGCTTACCTTGTCTTGAGGAAAAA 1327
Query 1474 CAGAGA 1479
||||||
Sbjct 1328 CAGAGA 1333
> Ahg471794 jgi|Araly1|471794|fgenesh2_kg.1__1748__AT1G15950.1
Length=1303
Score = 599 bits (324), Expect = 3e-170
Identities = 383/410 (93%), Gaps = 9/410 (2%)
Strand=Plus/Minus
Query 1686 TGTAATCTATTACATAGATCAAACATGAAGACTTGACTACAAAATCCATCAAACGGTTTG 1745
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 1303 TGTAATCTATTACATAGATCAAACATGAAGCCTTGTCTACAAAATCCATCAAACGGTTTG 1244
Query 1746 GCCAAAGAACTGAGTGTACAGATTCATAACCAGACGAGAC-ATATTGAAACAGAGGTTTC 1804
|| |||||||||| | ||||||||||||||||||| |||| || ||||||||||||||||
Sbjct 1243 GCTAAAGAACTGA-TATACAGATTCATAACCAGACAAGACAAT-TTGAAACAGAGGTTTC 1186
Query 1805 ACATAACCAGAGACAACAAACAAAAGCAACTTCAATGGTTAAGGATACTTAAGGGGGATA 1864
||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1185 ACACAACCAGAGACAAAAAACAAAAGCAATTTCAATGGTTAAGGATACTTAAGGGGGATA 1126
Query 1865 CTTGAGGGAATTAATAAGCTTTTCAAGACCCGATCTTAATGCCATTTTCCACGGATTCTT 1924
||||||||||| |||||| |||||||||||||||||||||||||||||| |||||| |||
Sbjct 1125 CTTGAGGGAATAAATAAGTTTTTCAAGACCCGATCTTAATGCCATTTTCGACGGATCCTT 1066
Query 1925 GCGATGCTGAaggaggaggaggaggaggagCAAGATGGCCTTTCTCTTGTAAGCTCTTGA 1984
|||||| | || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 GCGATG-T---TGA--AGGAGGAGGAGGAGCAAGATGGCCTTTCTCTTGTAAGCTCTTGA 1012
Query 1985 CTGTGTCGTAGAGGCTTTGCTTGGTGGAAGTGAACTCTAAGCCTAAGTCCTTAATCTTCT 2044
|||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |
Sbjct 1011 CTGTGTCGTAGAGGCTTTGCTTGGTGGATGTGAACTCTAAGCCCAAGTCTTTAATCTTTT 952
Query 2045 GGTTAGTGAATTTGTATGGCTTGGCTCTAGGGTTCTTCTCGTCCTTGCAC 2094
|||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 951 GGTTAGTGAATTTGTATGGCTTGGCTCTAGGGTTCTTCTCATCCTTGCAC 902
> Ahg930903 jgi|Araly1|930903|scaffold_303360.1
Length=475
Score = 300 bits (162), Expect = 3e-80
Identities = 353/443 (80%), Gaps = 22/443 (5%)
Strand=Plus/Plus
Query 1031 TATGCTGGACAATACGTTATGCAGGGGTTTCTTGATTTAAGACTAGAA-CCATGGCTCAG 1089
||||| ||||||||| | ||||| | |||||||| ||| ||| || |||||||||||
Sbjct 3 TATGCCGGACAATACATAATGCAAAGATTTCTTGACCTAAAACT-CAAGCCATGGCTCAG 61
Query 1090 AAACTTCCTAACCA-GATGCTTGGCTATAATCCCAAGTTTGATCGTTGCTTTGATAGGTG 1148
|||||| |||| || |||| || ||||||||||| ||| | |||||| || | || ||||
Sbjct 62 AAACTTACTAA-CACGATGTTTAGCTATAATCCCGAGTCTAATCGTTTCTCTCATTGGTG 120
Query 1149 GCTCAGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGATGATCTTATCCTTTGAACTCC 1208
| || ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||
Sbjct 121 GTTCTGCTGGAGCCGGAAAGTTAATCATCATTGCCTCGGTGATCTTGTCCTTTGAGCTCC 180
Query 1209 CATTTGCTTTAGT-CCCACTTCTC-AAAT-TCACAAGCAGTAAAACCAAAATGGGCTCAC 1265
| || || | || ||| || || |||| | |||||| | |||||||| ||||| ||||
Sbjct 181 CGTTCGCGCTGGTTCCC-CT-CTTGAAATGT-ACAAGCTGCAAAACCAAGATGGGTTCAC 237
Query 1266 ACGCCAATTCACTTGTG-ATTTCATCGGTGACTTGGATAATTGG-TGGACTTATTATGGG 1323
||| ||| ||| || || || || | |||||||||| ||||| | ||| || |||||
Sbjct 238 ACGTCAACTCAATT-TGGATCACAGCTTTGACTTGGATTATTGGATT-ACTCATCATGGG 295
Query 1324 TATAAACATTTACTATCTTGTAAGCAGCTTCATCAAGTTGCTTCTCCATAGTCACATGAA 1383
|||||||| |||||| | |||| ||| ||||||||| |||||||||||||||| ||||
Sbjct 296 AATAAACATATACTATATAGTAACCAGTTTCATCAAGCTGCTTCTCCATAGTCATATGAT 355
Query 1384 CCTTGTAGCCATTGTTTTCT-TAGGAGTTCTTGGATTCTCAGGCATTGCCA-CTTACTTA 1441
||||| ||| | | |||| | ||| ||||||| ||| |||| ||||| | || | |||
Sbjct 356 GCTTGTCGCCGTCATCTTCTGT-GGAATTCTTGGGTTCGCAGGTATTGCTATCT-ATTTA 413
Query 1442 GC-TGCCATCAG-TTACCTTGTC 1462
|| | |||| || ||||||||||
Sbjct 414 GCGT-CCAT-AGCTTACCTTGTC 434
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80408507195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5