BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15970.1
Length=1658
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471796 jgi|Araly1|471796|fgenesh2_kg.1__1750__AT1G15970.1 2237 0.0
> Ahg471796 jgi|Araly1|471796|fgenesh2_kg.1__1750__AT1G15970.1
Length=1571
Score = 2237 bits (1211), Expect = 0.0
Identities = 1482/1604 (92%), Gaps = 53/1604 (3%)
Strand=Plus/Plus
Query 54 ttttctgaagtcaaaagcttt-ttttttcttcATTGTTCAAAGATTTTATTTTGTTGCTC 112
||||||||||||||||| ||| ||||||||||| ||||| |||||||| |||||||||||
Sbjct 1 TTTTCTGAAGTCAAAAGGTTTCTTTTTTCTTCACTGTTCCAAGATTTTCTTTTGTTGCTC 60
Query 113 ATTGTTTCTAACCTTGCTTTTCTCGTGAACACAGCAAGCAACTTGGTTTAGTTTTACTAG 172
||||||||||| || ||||||||||||||||| |||||||||||| || ||||| ||||
Sbjct 61 ATTGTTTCTAAATTTACTTTTCTCGTGAACACAACAAGCAACTTGGCTTGGTTTTGCTAG 120
Query 173 AAGATTCCTAAAAATGAGATATTTAGCGGTGACAAAAAAGTTTCATTTTTGGTGCTAATG 232
||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||
Sbjct 121 AAGATTCCTAAAAATGAGATATTTAGCGGTGAC-AAAAAGTTTCA-TTTGGGTGCTAATG 178
Query 233 TAGCTGTAAAGTCTAGGCCTTCCGATATATAATCTCTTGAAATAAGTTTCGAGACTGTTG 292
||||||||||||||||||||| ||||||||||||||||||| || ||| ||| |||||||
Sbjct 179 TAGCTGTAAAGTCTAGGCCTTTCGATATATAATCTCTTGAATTAGGTTACGAAACTGTTG 238
Query 293 GAAATAGCAATTTTGTTGTTGTTGTGTGATCCAGTGATAGATCTGTGAAATC-AAAAAGC 351
||||||| |||||||||||| | |||||||||||||||||||||||||||| |||||||
Sbjct 239 AAAATAGCTATTTTGTTGTTG-T-TGTGATCCAGTGATAGATCTGTGAAATCAAAAAAGC 296
Query 352 AGTTT-TTTGTGAGAATCGGGTCAATGTCGGTTCCTCCTAGATTCCGGTCCGTAAATTCC 410
| ||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 297 ATTTTCTTTGTGAGAATCGGGTCAATGTCGGTTCCGCCTCGATTCCGGTCCGTAAATTCC 356
Query 411 GATGAGCGAGAGTTCCGATCAGTTCTTGGTCCTACCGGGAACAAGCTGCAGAGGAAACCA 470
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GATGAGCGAGAGTTCCGATCAGTTCTTGGTCCTACCGGGAACAAGCTGCAGAGGAAACCG 416
Query 471 CCGGGGATGAAACTGGAGAAGCCGATGAT-G-G-AGAAGACCATCATCGACTCAAAAGAT 527
||||||||||||||||||||||||||||| | | |||||||||||||||| |||||||||
Sbjct 417 CCGGGGATGAAACTGGAGAAGCCGATGATAGAGAAGAAGACCATCATCGAGTCAAAAGAT 476
Query 528 G-AGAAAGCGAAGAAACCAACTACTCCGGCTTCACCAAGGACGACTCTGAAGCAATGCTC 586
| ||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 477 GAAGAAA-CGAAGAAACCAACTACTCCGGCTTCTCCAAGGACGACTTTGAAGCAATGCTC 535
Query 587 GTCTCTTTGCTCTTCGATTTTGAGAAAGAATAGTGCTTCAATGACTGCTTCGTATTCCTC 646
|||||||||||||||||||||||||||||| ||||| || ||||||||||| ||||||||
Sbjct 536 GTCTCTTTGCTCTTCGATTTTGAGAAAGAACAGTGCCTCGATGACTGCTTCCTATTCCTC 595
Query 647 TGATGCTTCGTCTTCGTGTGAGTCATCGCCTTTGAGCGTGGCGTCTTCTTCGAGCTGTAA 706
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 596 TGATGCTTCGTCTTCGTGTGAGTCATCGCCTTTGAGCGTGGCTTCTTCTTCGAGCTGTAA 655
Query 707 GAAGGTTGTGAGGCGAAGTGGGTCTGTCTCTTCTACAAGGAAGCTGAGTGTTGGGAAAGA 766
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAAGGTTATGAGGCGAAGCGGGTCTGTCTCTTCTACAAGGAAGCTGAGTGTTGGGAAAGA 715
Query 767 AGAAGAGAAGGTTTCTGGTGATTGCTTCGCTGATGGTCGTAAAAGGTGTGCTTGGATCAC 826
||| || |||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 AGAGGACAAGGTTGCTGGTGATTGCTTCGCTGATGGTCGTAGAAGGTGTGCTTGGATCAC 775
Query 827 ACCTAAAGCTGACCCGTGCTATGTTGCTTTCCATGACGAAGAATGGGGAGTTCCTGTACA 886
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 776 ACCTAAAGCTGACCCGTGCTATGTTGCTTTCCACGACGAAGAATGGGGAGTTCCTGTAGA 835
Query 887 TGACGACAAGAAGCTTTTTGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTCTCATG 946
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 836 TGACGACAAGAAGCTTTTCGAGTTATTATGCCTCTCTGGTGCTCTAGCCGAACTCTCCTG 895
Query 947 GACCGACATTCTCTCCAGAAGACA-TATACTCAGGGAAGTTTTTATGGACTTCGATCCAG 1005
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 896 GACCGACATTCTCTCCAGAAGACAGT-TACTCAGGGAAGTTTTTATGGACTTCGATCCAG 954
Query 1006 TCGCTGTAGCTGAATTGAATGACAAAAAGTTAACAGCGCCAGGTACTGCTGCCATTTCCT 1065
| ||||| ||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 955 TTGCTGTTTCTGAAATGAATGACAAAAAGTTAACAGCGCCCGGCACTGCTGCCATTTCCT 1014
Query 1066 TACTATCAGAGGTCAAGATACGATCAATCCTCGATAACTCACGCCATGTGCGCAAGATTA 1125
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||
Sbjct 1015 TACTATCAGAGGTCAAGATACGGTCAATCCTCGATAACGCACGCCATGTGCGCAAGATTA 1074
Query 1126 TAGCTGAATGTGGATCATTGAAGAAGTACATGTGGAACTTTGTGAACAACAAGCCTACAC 1185
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TAGCTGAATGCGGATCATTTAAGAAGTACATGTGGAACTTTGTGAACAACAAGCCTACAC 1134
Query 1186 AGAGCCAATTCAGGTATCAGCGCCAAGTCCCTGTGAAGACATCGAAAGCTGAGTTTATAA 1245
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 1135 AGAGCCAATTCAGGTATCAGCGCCAAGTCCCCGTGAAGACATCGAAAGCAGAGTTTATCA 1194
Query 1246 GCAAAGATCTTGTACGCAGAGGCTTTCGCAGCGTTAGTCCAACAGTTATTTACTCCTTCA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GCAAAGATCTTGTACGCAGAGGCTTTCGCAGCGTTAGTCCAACAGTTATTTACTCCTTCA 1254
Query 1306 TGCAAGCAGCTGGACTCACGAATGATCATCTCATAGGCTGCTTCAGATACCAAGACTGTT 1365
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 1255 TGCAAGCAGCTGGACTCACGAATGATCATCTCATAGGGTGCTTCAGATTCCAAGACTGTT 1314
Query 1366 GCGTAGATGCagagacaacaacaacaac---gaaggcgaagaagaagaacgagagagaga 1422
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1315 GCGTAGATGCAGAAACAACAACAACAACAACGAAGGCGAAGAAGAAGAACGAGAGAGAGA 1374
Query 1423 gTGATAAATAAGAGCCATTCTGAAATAAGCTAATTAACGTATTTGAGTACCAATGTTGTT 1482
|||||||||||||| || ||||||||||||||||||||||||||||||||| | |||
Sbjct 1375 CTGATAAATAAGAGCAATCCTGAAATAAGCTAATTAACGTATTTGAGTACCACCAT-GTT 1433
Query 1483 TGTTCTGCTTCCAGAGATTAATTGACACAACGAGGTTTTGTTACCGTGACGTGTTCTTAG 1542
||| || ||| ||||||||||||| |||||||||||||||||| | || | |
Sbjct 1434 -GTT-TG-----AGA--TTAATTGACACAAGGAGGTTTTGTTACCGTGA--T-TT-T--G 1478
Query 1543 TTTTGTATTTTGGTGTTGTATAGATGTATT-TTGGTTATCGG-TTCATGCA--TA--GTA 1596
| | | | ||||||||| || ||||||||||| || ||||| || |||
Sbjct 1479 ----GC-----G-T-T-GTATAGATGC-TTCTTGGTTATCGGCTT-ATGCACATATAGTA 1524
Query 1597 GAATGTTGCGATGAACTCTTAGACCAGACGTATTTGTGTGAATC 1640
||||||||||||||||||||||||| ||| |||||||||| |||
Sbjct 1525 GAATGTTGCGATGAACTCTTAGACCGGACATATTTGTGTGGATC 1568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62163279840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5