BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G15980.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471797 jgi|Araly1|471797|fgenesh2_kg.1__1751__AT1G15980.1 2446 0.0
Ahg911407 jgi|Araly1|911407|Al_scaffold_0001_1661 100 3e-20
> Ahg471797 jgi|Araly1|471797|fgenesh2_kg.1__1751__AT1G15980.1
Length=1560
Score = 2446 bits (1324), Expect = 0.0
Identities = 1492/1571 (95%), Gaps = 19/1571 (1%)
Strand=Plus/Plus
Query 4 aaaaaaCCTTCCAATGGCTTCTTCACTTCCTCTGTTACCCAAACCCATTTCCCCATTCTT 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAACCTTCCAATGG---CTTCACTTCCTCTGTTACCCAAACCCATTTCCCCATTCTT 57
Query 64 TAAAACGCCGCCGTTTTCTACCTCCAAACCACTCGTCTTCCTCAACTTTCAAACTCGTCT 123
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 58 CAAAACGCCGCCGTTTTCTACCTCCAAACCACTCGTCTTCCTCAACTTTCAAACTCGGCT 117
Query 124 TACGTCGAGATCTTCCGATGTATCGGTCAATCTCAAGAAGAAGAATAATCCGTGGCTCGA 183
||| ||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||
Sbjct 118 TACTTCGAGATCTTCCGATGTCTCGGTCAATCTCAAGAAGAAGATTAACCCGTGGCTCGA 177
Query 184 CCCGTTTGATAGCGGTGAAGACCCGGATAACGAATACGGGTCCTTGTTTGCCGACGGAAA 243
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 178 CCCGTTTGATAGCGGTGAAGACCCGGAAAACGAATACGGGTCCTTGTTTGTCGACGGAAA 237
Query 244 ACAAGACGAGGATCCAAGACCACCGGATAATCCTGATAACCCTTACGGCTTCTTGAAGTT 303
|||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 ACAAGATGAGGATCCACGACCACCGGATAATCCTGATAACCCTTACGGGTTCTTGAAGTT 297
Query 304 TCCAAAGGGTTACACCGTCGAGCTTGCTTCTTTACCGTTGAAAATCAGAGGAGATGTTAG 363
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 298 TCCCAAGGGTTACACCGTCGAGCTTGCTTCTTTGCCGTTGAAAATCAGAGGAGATGTTAG 357
Query 364 ACGATGTTGCTGCGTTATCTCCGGTGGCGTTTACGAGAATCTACTCTTTTTCCCGACTAT 423
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 358 ACGATGTTGCTGCGTTATCTCCGGTGGCGTTTACGAGAATTTACTCTTTTTCCCGACAAT 417
Query 424 TCAGCTAATCAAAGACAGGTATCCTGGTGTTCAGGTAGATATATTAACGACTGAAAGAGG 483
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 418 TCAGATAATCAAAGACAGGTATCCTGGTGTTCAGGTAGATATATTAACGACTGATAGAGG 477
Query 484 AAAACAAACATACGAGCTAAACAAAAACGTGAGATGGGCCAATGTGTATGATCCGGATGA 543
||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||
Sbjct 478 AAAACAAACATACGAATTAAACAAAAACGTGAGATGGGCAAATGTGTATGATCCAGATGA 537
Query 544 TCATTGGCCTGAACCAGCTGAATACACAGACATGATCGGACTCCTCAAAGGAAGGTACTA 603
||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 538 TCATTGGCCTGAACCTGCTGAATACACAGACATGATCGGAATCCTCAAAGGAAGGTACTA 597
Query 604 TGACATGGTTCTGTCCACGAAGCTAGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGAC 663
||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 598 TGACATGATTCTGTCCACGAAGCTCGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGAC 657
Query 664 AACGGCTCGAGACAGGGTTAGTTACATTTACCCGAATGTTAACTCTGCAGGAGCTGGTCT 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 AACGGCTCGAGACAGGGTTAGTTACATTTACCCGAATGTTAACTCTGCAGGAGCTGGTCT 717
Query 724 GATGCTGTCCGAGACCTTTACAGCAGAAAATACCAACCTTTCAGAATTAGGTTATAGCAT 783
||||||||| ||||||||||| ||||||||| ||||||||||||||||||| ||||||||
Sbjct 718 GATGCTGTCTGAGACCTTTACCGCAGAAAATGCCAACCTTTCAGAATTAGGCTATAGCAT 777
Query 784 GTAT-ACTCAGATGGAAGATTGGTTAGGAAGACCGTTTAGGAGTGTTCCAAGGACTCCTC 842
|||| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 778 GTATGA-TCAGATGGAAGATTGGTTAGGAAGACCATTTAGGAGTGTTCCAAGGACTCCTG 836
Query 843 TGTTGCCACTTAGGGTATCGATTTCACGGAAAGTGAAAGAGGTTGTGGCTGCA-AAGTAT 901
|||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||
Sbjct 837 TGTTGCCACTTAGGGTATCGATTTCACGGAAATTGAAAGAGGTTGTGGCTG-AGAAGTAT 895
Query 902 AGGAATGCTGGAGCAGTGACGGGGAAGTTTATAGTGATTCATGGTATTGAATCAGATTCT 961
|||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct 896 AGGAATGCTGGAGCAGCCACAGGGAAGTTTATAGTGATTCATGGGATTGAATCGGATTCT 955
Query 962 AAGGCATCAATGCAATCAAAAGGAGAT-GCTGATAGTTTACTTTCACTTGAAAAATGGGC 1020
|| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 956 AAAGCATCAATGCAATCAAAAGGAGATAG-TGATAGTTTACTTTCACTTGAAAAATGGGC 1014
Query 1021 TAAGATTATAAAGGGTGTAAGGGGATTCAAGCCGGTCTTTGTGATTCCACATGAGAAAGA 1080
|||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1015 TAAGATTATAAAGGGTATAAGGGGGTTCAAGCCGGTCTTTGTGATTCCACATGAGAAAGA 1074
Query 1081 AAGAGAAAACGTTGAAGATTTTGTGGGTGATGATACATCTATAGTGTTCATCACAACACC 1140
||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1075 GAGAGAAAACGTGGAAGAAATTGTGGGTGATGATACATCTATAGTGTTCATAACAACACC 1134
Query 1141 AGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTCATCGCAACAAACACAGCTGC 1200
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1135 AGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTTATCGCTACAAACACAGCTGC 1194
Query 1201 GATTCAACTAGCTAATGCGCGAGACAAACC-ATGTATTGGGTTGTTCTCTTCAGAAGAGA 1259
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1195 GATTCAACTAGCTAATGCGCGAGACAAACCCA-GTATTGGGTTGTTCTCTTCAGAAGAGA 1253
Query 1260 AAGGGAAGCTCTTTGTACCGTATGCAGAAGAGAAGAGTAACTGTGTAATTATTGCTTCGA 1319
||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 1254 AAGGGAAGCTCTTTGTACCATACGCAGAAGAGAAAAGTAACTGTGTAATTATTGCTTCGA 1313
Query 1320 AGACTGGAAAACTAGCAGATATCGACATTGGAACTGTTAAAAATGCAATGCAGGTCTTTG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1314 AGACTGGAAAACTAGCAGATATCGACATTGGAACTGTTAAAAATGCAATGCAGATCTTTG 1373
Query 1380 AAGGATCATTGGCTCTCGTGTAGATAA-CTTTACAGTTTCTGAAACAAGTTCTATATATA 1438
||||||||||||||||||||||||||| | | | ||||||||||||| ||| |||||||
Sbjct 1374 AAGGATCATTGGCTCTCGTGTAGATAAACCTAA-AGTTTCTGAAACACGTT--ATATATA 1430
Query 1439 GAGCATTTATGTGTATAAATCAGTTATGTAGTCTCTGTT---CTGATGTTGGCCTCTCAT 1495
|||||||||||||||||||||| |||| |||| |||||| ||||||||||||||| ||
Sbjct 1431 GAGCATTTATGTGTATAAATCAATTATATAGT-TCTGTTATTCTGATGTTGGCCTCTGAT 1489
Query 1496 CAAGAATTGGATTATTCAGCATCAAAATCAGGTTCCGGAGGCTTTTGCAGATTTATCAAG 1555
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 1490 CAAGAATTGGATTATTCAGCATCAAAATCAGGTTCCGGGGGCTTTTGCAGATTCATCAAG 1549
Query 1556 GTCTTTGAACT 1566
||||||||||
Sbjct 1550 CTCTTTGAACT 1560
> Ahg911407 jgi|Araly1|911407|Al_scaffold_0001_1661
Length=2217
Score = 100 bits (54), Expect = 3e-20
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 1507 TTATTCAGCATCAAAATCAGGTTCCGGAGGCTTTTGCAGATTTATCAAGGTCTTTGAACT 1566
|||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 2217 TTATTCAGCATCAAAATCAGGTTCCGGAGGCTTTTGCAGATTCATCAAGCTCTTTGAACT 2158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5