BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16000.1 Length=514 Score E Sequences producing significant alignments: (Bits) Value Ahg471799 jgi|Araly1|471799|fgenesh2_kg.1__1753__AT1G16000.1 590 4e-168 > Ahg471799 jgi|Araly1|471799|fgenesh2_kg.1__1753__AT1G16000.1 Length=454 Score = 590 bits (319), Expect = 4e-168 Identities = 426/473 (90%), Gaps = 26/473 (5%) Strand=Plus/Plus Query 43 AATGGGAAATGAGACGAAGA-C--CAACGGTGGTCCTGCAAGTATGGCCGGAGGCGGAGG 99 |||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||| Sbjct 1 AATGGGAAATGAGACGAAGACCAACAACGGTGGTGCTGCAAGTATGGCCGGAGGCGGAGG 60 Query 100 ATTCAGAGCTAAAATGGAACATTACGTTTACAGTGGTGAAAAGAAGCACGTCTTGGTCGG 159 ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| || Sbjct 61 ATTCAGAGCTAAATTGGAGCATTACGTTTACAGTGGTGAAAAGAAGCACGTCTTGGTTGG 120 Query 160 GATCGGAATCGTCACCATCATCTTCGGAGTTCCTTGGTATTTGATGACTCAAGGGTCAAA 219 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 GATCGGAATCGTCACCATCATCTTCGGAGTTCCTTGGTATTTGATGACTCAAGGGTCGAA 180 Query 220 GCATCAATCTCACCAAGATTACATGGACAAGGCCGATAAAGCTCGAAAAGCACGCCTCTC 279 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 GCATCAATCTCACCAAGATTACATGGACAAGGCCGATAAAGCTCGAAAAGCCCGCCTCTC 240 Query 280 ATCGTCTTCATCAGCTAACAAGTAGTCTGTCTGAAGGATTGAGTCATTTGCACACTGTTA 339 |||||||||||||||||||||||||||||||| ||| | | | || |||||||| | Sbjct 241 ATCGTCTTCATCAGCTAACAAGTAGTCTGTCTCAAG--T--A--C-TT-GCACACTG--A 290 Query 340 TCTCGTACTCATTTTCCCACACAAGTTAAAACTTAGTCAAAA---TCTGA-GTCTTTTTT 395 | |||||||| ||||||| |||| ||||||||| |||| ||||| | |||| | Sbjct 291 T-----ACTCATTTACCCACACGAGTTTAAACTTAGTAAAAAGAGTCTGAAG-CTTTGT- 343 Query 396 GTGATTTAGATTCAAAATCATTCTCATTTTCATGCACCATGTTTGGTTATCCGTTTTTTA 455 | | ||||||||||| | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 344 G-G-TTTAGATTCAAGCTTGTTCTTATTTTGATGCACCATGTTTGGTTATCTGTGTTTTA 401 Query 456 ATAAAAAGATCAAAGATTCTATCACATTTGGATTGACAATGCCTATGATAAAA 508 |||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 402 ATAAAAAGATAAAAGATTCTATCACATTTGGATTGACAATGCCTATGATAAAA 454 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 18696238610 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5