BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16000.1

Length=514
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471799 jgi|Araly1|471799|fgenesh2_kg.1__1753__AT1G16000.1         590    4e-168


> Ahg471799 jgi|Araly1|471799|fgenesh2_kg.1__1753__AT1G16000.1
Length=454

 Score =  590 bits (319),  Expect = 4e-168
 Identities = 426/473 (90%), Gaps = 26/473 (5%)
 Strand=Plus/Plus

Query  43   AATGGGAAATGAGACGAAGA-C--CAACGGTGGTCCTGCAAGTATGGCCGGAGGCGGAGG  99
            |||||||||||||||||||| |  |||||||||| |||||||||||||||||||||||||
Sbjct  1    AATGGGAAATGAGACGAAGACCAACAACGGTGGTGCTGCAAGTATGGCCGGAGGCGGAGG  60

Query  100  ATTCAGAGCTAAAATGGAACATTACGTTTACAGTGGTGAAAAGAAGCACGTCTTGGTCGG  159
            ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  61   ATTCAGAGCTAAATTGGAGCATTACGTTTACAGTGGTGAAAAGAAGCACGTCTTGGTTGG  120

Query  160  GATCGGAATCGTCACCATCATCTTCGGAGTTCCTTGGTATTTGATGACTCAAGGGTCAAA  219
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  121  GATCGGAATCGTCACCATCATCTTCGGAGTTCCTTGGTATTTGATGACTCAAGGGTCGAA  180

Query  220  GCATCAATCTCACCAAGATTACATGGACAAGGCCGATAAAGCTCGAAAAGCACGCCTCTC  279
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  181  GCATCAATCTCACCAAGATTACATGGACAAGGCCGATAAAGCTCGAAAAGCCCGCCTCTC  240

Query  280  ATCGTCTTCATCAGCTAACAAGTAGTCTGTCTGAAGGATTGAGTCATTTGCACACTGTTA  339
            |||||||||||||||||||||||||||||||| |||  |  |  | || ||||||||  |
Sbjct  241  ATCGTCTTCATCAGCTAACAAGTAGTCTGTCTCAAG--T--A--C-TT-GCACACTG--A  290

Query  340  TCTCGTACTCATTTTCCCACACAAGTTAAAACTTAGTCAAAA---TCTGA-GTCTTTTTT  395
            |     |||||||| ||||||| |||| ||||||||| ||||   ||||| | |||| | 
Sbjct  291  T-----ACTCATTTACCCACACGAGTTTAAACTTAGTAAAAAGAGTCTGAAG-CTTTGT-  343

Query  396  GTGATTTAGATTCAAAATCATTCTCATTTTCATGCACCATGTTTGGTTATCCGTTTTTTA  455
            | | |||||||||||  |  |||| ||||| |||||||||||||||||||| || |||||
Sbjct  344  G-G-TTTAGATTCAAGCTTGTTCTTATTTTGATGCACCATGTTTGGTTATCTGTGTTTTA  401

Query  456  ATAAAAAGATCAAAGATTCTATCACATTTGGATTGACAATGCCTATGATAAAA  508
            |||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  402  ATAAAAAGATAAAAGATTCTATCACATTTGGATTGACAATGCCTATGATAAAA  454



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18696238610


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5