BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16010.2
Length=1833
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471800 jgi|Araly1|471800|fgenesh2_kg.1__1754__AT1G16010.1 2460 0.0
Ahg927405 jgi|Araly1|927405|scaffold_202966.1 1363 0.0
> Ahg471800 jgi|Araly1|471800|fgenesh2_kg.1__1754__AT1G16010.1
Length=1738
Score = 2460 bits (1332), Expect = 0.0
Identities = 1491/1565 (95%), Gaps = 21/1565 (1%)
Strand=Plus/Plus
Query 281 CAGCTCTTTGATCCCGTGGCTGGTAGGATATTACGGCGTTTGTAGCTCT-G--T--CGTC 335
||||| |||||||||||||||||| |||||||||||||||||||||||| | | | |
Sbjct 181 CAGCTTTTTGATCCCGTGGCTGGTTGGATATTACGGCGTTTGTAGCTCTGGTATGGCTTT 240
Query 336 GTGGATAGAGTTAGAACGACGAAATCAGCCTTGGTTTCCTAACTGTTATTTGGCATTTCA 395
||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
Sbjct 241 GTGTATAGAGTTAGAACGACGAAATCAGCCTTGATTTATTAACTGTTATTTGGCATTCCG 300
Query 396 GTATCTGAATTTTTGCAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTG 455
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GTATCTGAATTTTTGCAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTG 360
Query 456 CTTCAGCTATGAACCTCAGAGATGCTTCTGTGACTCGGCCTTCTGCTTCTGGAAGACCAC 515
|||||||||||||||||||||||||| |||| |||||||||||||| ||||||||| |||
Sbjct 361 CTTCAGCTATGAACCTCAGAGATGCTGCTGTCACTCGGCCTTCTGCCTCTGGAAGAGCAC 420
Query 516 CCCTTCTTGGAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAAGGCCTACGCTCTTGGA 575
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 421 CCCTTCTTGGAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAAGGCCTACGGTCTTGGA 480
Query 576 TTCGTGTTGATACTTCTGGTAATACTCAGGTCATGGAGGTTGACAAGTTCACTATGATGC 635
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 481 TTCGTGTTGATACTTCTGGCAATACTCAGGTCATGGAGGTCGACAAGTTCACTATGATGC 540
Query 636 GTAGGTGTGACTTACCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTCGTGTATCCCT 695
|||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 541 GTAGATGTGACTTGCCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTTGTGTATCCCT 600
Query 696 CTACTATCCTAGGCCGAGAGAAGGCTATTGTTGTCAACTTAGAGCAGATCCGTTGTATTA 755
|||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||
Sbjct 601 CTACTATCCTCGGCCGAGAAAAGGCTATTGTTGTGAACTTAGAGCAAATCCGTTGTATTA 660
Query 756 TTACTGCAGACGAAGTTCTGCTTCTGAATTCCCTTGACAACTACGTGCTGCGCTATGTTG 815
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 661 TTACTGCAGATGAAGTTCTGCTCCTGAATTCCCTTGACAACTACGTGCTGCGGTATGTTG 720
Query 816 TTGAGTTGCAGCAGAGACTAAAGACTAGTAGTGTAGGTGAGATGTGGCAGCAGGAAAATT 875
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTGAGTTGCAGCAGAGACTAAAGACTAGTAGTGTAGGTGAGATGTGGCAGCAGGAAAATG 780
Query 876 CCCAGTTGAGTAGGAGGAGGAGCAGGAGTTTTGACAATGCTTTTGAGAATTCATCCCCTG 935
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CCCAGTTGAGTAGAAGGAGGAGCAGGAGTTTTGACAATGCTTTTGAGAATTCATCCCCTG 840
Query 936 ATTATTTACCTTTCGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTACGTTTC 995
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATTATTTACCTTTTGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTACGTTTC 900
Query 996 TCGATTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGCTTACCT 1055
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TCGATTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGCTTACCT 960
Query 1056 CAAAGATCAGTACACTAAACTTGGAGCGTGTGCGTAGACTAAAGAGCAGGCTTGTAGCAC 1115
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 961 CAAAGATCAGTACACTAAACTTGGAGCGTGTGCGTAGACTGAAGAGCAGGCTGGTAGCAC 1020
Query 1116 TGACAAGAAGAGTTCAGAAGGTTCGGGATGAGATCGAGCAGCTAATGGATGATGATGGAG 1175
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1021 TGACAAGAAGAGTTCAGAAGGTTCGGGATGAGATTGAGCAGCTAATGGATGATGATGGAG 1080
Query 1176 ATATGGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTATGTACGGTG 1235
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1081 ATATGGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTCTGTACGGTG 1140
Query 1236 ACCAGTCCTTATTGGGTTACAGGTCAAATGATGGTCTATCTGTTTCTGCACCGGTGTCTC 1295
|||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1141 ACCAATCCTTGTTGGGTTACAGGTCAAATGATGGTCTATCTGTTTCTGCACCAGTCTCTC 1200
Query 1296 CTGTTTCTTCTCCACCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTGCGAGGAGTC 1355
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTGTTTCTTCTCCTCCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTGCGAGGAGTC 1260
Query 1356 GGCATGACAGTGCAAGGAGTTCTGAAGGTG---CAGAGAATATAGAAGAGCTAGAGATGT 1412
|||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1261 GGCATGACAGTGCAAGGAGTTCGGAAGGTGTAACAGAGAATATAGAAGAGCTAGAGATGT 1320
Query 1413 TGCTGGAAGCTTACTTTGTCGTCATTGATAGTACTCTAAACAAGTTGACATCGTTAAAGG 1472
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1321 TGCTGGAAGCTTACTTTGTCGTCATTGATAGCACTCTAAACAAGTTGACATCGTTAAAGG 1380
Query 1473 AGTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGCGGAATCAGC 1532
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGCGGAATCAGT 1440
Query 1533 TGATCCAGTTCGAGTTGCTTCTGACGACTGCAACGTTT-GTTGTAGCCATATTTGGGGTC 1591
||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||
Sbjct 1441 TGATCCAATTCGAGTTGCTTCTCACGACTGCAAC-TTTCGTTGTAGCCATATTTGGGGTC 1499
Query 1592 GTTGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTCAATCAGCCAGGTGCATTC 1651
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1500 GTTGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTCAACCAGCCAGGAGCATTC 1559
Query 1652 AGATGGGTACTCATAATTACTGGAGTATGTGGCTTTGTGATATTTTCGGCATTCGTCTGG 1711
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1560 AGATGGGTACTTATAATTACTGGAGTATGTGGCTTTGTTATATTTTCGGCATTCGTCTGG 1619
Query 1712 TTCTTCAAGTACAGAAGACTCATGCCTCTATAAGAAGAGAGACATGAATGTGCTCCCCAG 1771
||||||||||||||||||||||||||||||||||| | || ||||||||||| |||||
Sbjct 1620 TTCTTCAAGTACAGAAGACTCATGCCTCTATAAGA-G-GA--CATGAATGTGCCCCCCAC 1675
Query 1772 ---A-AA-GTAGACATCAACTTATATTGTTATGTTGCTTACAGATATTAATGATTTGTTT 1826
| || |||||||||||||| ||||||| ||||||||||| || |||||||||||||
Sbjct 1676 CCCACAAAGTAGACATCAACTTCTATTGTTGTGTTGCTTACA--TACTAATGATTTGTTT 1733
Query 1827 CCTTT 1831
|||||
Sbjct 1734 CCTTT 1738
Score = 235 bits (127), Expect = 8e-61
Identities = 171/190 (90%), Gaps = 12/190 (6%)
Strand=Plus/Plus
Query 4 TCCATCGCTCGTTTGTTTCTTCTTCAGCCATATCGGAAAAAACGATATCCGACGAGCCAT 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 TCCATCGCTCGTTTGTTTCTTCTTCAGCCATATCGGAAAAAACGATATACGACAAGCCAT 60
Query 64 TCGGTGTTTGTTCCGAGAAGCTCCGA-TCGATCTGTGTTAGGGTTTTTC-TTTTTCCGCC 121
||||||||||||||| ||||| ||| |||||||||| |||| |||||| ||||||||||
Sbjct 61 CCGGTGTTTGTTCCGACAAGCTTCGAATCGATCTGTGATAGG-TTTTTCCTTTTTCCGCC 119
Query 122 TTATGAATCTCTCTATCGCGGTTTCATTAGATTCAGTTTAACTCGAGTGATGAAACCAAT 181
|||||||||||| | | | |||| |||||||||||||||||||||||||||||||
Sbjct 120 TTATGAATCTCT-T-T-----T--CATTGGATTCAGTTTAACTCGAGTGATGAAACCAAT 170
Query 182 CTCCGTGCTA 191
||||||||||
Sbjct 171 CTCCGTGCTA 180
> Ahg927405 jgi|Araly1|927405|scaffold_202966.1
Length=1373
Score = 1363 bits (738), Expect = 0.0
Identities = 1157/1358 (85%), Gaps = 33/1358 (2%)
Strand=Plus/Plus
Query 408 TTG-CAACAATGTCTGAGCTAAAAGAGCGCCTGCTTCCTCCAAGACCTGCTTCAGCTATG 466
||| ||||||||||||| || |||||||| |||||||||||||||||||||| |||||
Sbjct 12 TTGCCAACAATGTCTGAACTCAAAGAGCGTTTGCTTCCTCCAAGACCTGCTTCTGCTATA 71
Query 467 AACCTCAGAGATGCTTC-TGTGACTCGGCCTTCTGCT-TCTGGAAGACCACCCCTTCTTG 524
||||| |||| | | | || |||| |||||| || || || |||| ||| || ||||
Sbjct 72 AACCTTAGAGGGGATGCAGGT-TCTCGTCCTTCT-CTATCAGGGAGACAACCACTCCTTG 129
Query 525 GAGTTGATGTCTTGGGTCTGAAGAAGCGTGGACAA-GGCCTACGCTCTTGGATTCGTGTT 583
|| ||||||| |||||||| ||||||||||||||| ||| || | || ||||||||||||
Sbjct 130 GAATTGATGTTTTGGGTCTCAAGAAGCGTGGACAAGGGCTTAAG-TCGTGGATTCGTGTT 188
Query 584 GATACTTCTGGTAATACTCAGGTCATGGAGGTTGACAAGTTCACTATGATGCGTAGGTGT 643
||||||| || ||| |||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 189 GATACTTTTGCCAATTCTCAGGTCATTGAGGTTGATAAGTTCACTATGATGCGCAGATGT 248
Query 644 GACTTACCCGCCCGTGATTTAAGGCTGCTTGATCCCTTATTCGTGTATCCCTCTACTATC 703
|| ||||| || ||||||||||||||||||||||| || || |||||||| || |||||
Sbjct 249 GATTTACCAGCACGTGATTTAAGGCTGCTTGATCCTTTGTTTGTGTATCCGTCAACTATT 308
Query 704 CTAGGCCGAGAGAAGGCTATTGTTGTCAACTTAGAGCAGATCCGTTGTATTATTACTGCA 763
|| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 309 CTTGGCAGAGAGAAGGCTATTGTTGTTAACTTAGAGCAGATCCGTTGTATTATTACTGCG 368
Query 764 GACGAAGTTCTGCTTC-TGAATTCCCTTGACAACTACGTGCTGCGCTATGTTGTTGAGTT 822
|| || ||| ||| || ||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 369 GATGAGGTTTTGC-TCTTGAATTCCCTTGACAACTATGTGCTTCGCTATGTTGTTGAGCT 427
Query 823 GCAGCAGAGACTAAAGACTAGTAGTG-TAGGTGAGATGTGGCAGCAGGA-AAATTCCCAG 880
|||||||||||||||| | ||| || || |||| | ||| | ||||| | | | | |
Sbjct 428 GCAGCAGAGACTAAAGGCAAGTTCTGTTA-CTGAGGTTTGGAATCAGGACACACT-CGAA 485
Query 881 TTGAGTAGGAGGAGGAGCAGGAGTTTTGACAATGCT-TTTGAGAATTCATCCCCTGATTA 939
||||| ||||||||||| |||||||| ||||||| | ||| |||| ||||||||||||||
Sbjct 486 TTGAGCAGGAGGAGGAGTAGGAGTTTAGACAATG-TGTTTCAGAACTCATCCCCTGATTA 544
Query 940 TTTACCTTTCGAGTTTAGAGCTCTTGAAATAGCCCTTGAAGCTGCTTGTACGTTTCTCGA 999
||||||||||||||| || ||||||||| | ||||||||||||||||| || || || ||
Sbjct 545 TTTACCTTTCGAGTTCAGGGCTCTTGAAGTTGCCCTTGAAGCTGCTTGCACCTTCCTTGA 604
Query 1000 TTCCCAGGCTTCAGAGTTGGAGATTGAGGCATACCCGTTATTAGATGAGCTTACCTCAAA 1059
|||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 605 TTCCCAGGCTTCAGAGTTAGAGATTGAGGCATACCCATTATTGGATGAGCTTACCTCAAA 664
Query 1060 GATCAGTACACTAAACTTGGAGCGTGTGCGTAGACTAAAGAGCAGGCTTGTAGCACTGAC 1119
||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| ||||
Sbjct 665 GATCAGTACTTTAAACTTGGAGCGTGCACGTAGACTAAAGAGCAGACTTGTAGCATTGAC 724
Query 1120 AAGAAGAGTTCAGAAGGTTCGGGATGAGATCGAGCAGCTAATGGATGATGATGGAGATAT 1179
||||||||||||||||||||||||||||| || ||||||||||| |||||||| |||||
Sbjct 725 GAGAAGAGTTCAGAAGGTTCGGGATGAGATTGAACAGCTAATGGACGATGATGGGGATAT 784
Query 1180 GGCAGAAATGTATCTAACAGAGAAGAAGAGGAGAATGGAAGGATCTATGTACGGTGACCA 1239
||||||||||||||||||||||||||||| |||||||||||||||| | || ||||| ||
Sbjct 785 GGCAGAAATGTATCTAACAGAGAAGAAGAAGAGAATGGAAGGATCTTTATATGGTGATCA 844
Query 1240 GTCCTTAT-TGGGTTACAGGTCAAATGATGGTCTATCTGTTTCTGCACCGGTGTCTCCTG 1298
|| ||| || |||| | |||||||| || | ||| | |||||||| || |||||||
Sbjct 845 ATCTTTACCTGT-TTACCGAACAAATGATTGTTTTTCTCTGTCTGCACCAGTTTCTCCTG 903
Query 1299 TTTCTTCTCCACCTGATTCCCGAAGACTTGATAAAAGCTTGAGCATTGCGAGGAGTCGGC 1358
|||||||||| || || ||||| ||||| || |||||||||||||||| ||||| ||||
Sbjct 904 TTTCTTCTCCTCCCGAGTCCCGTAGACTCGAGAAAAGCTTGAGCATTGTAAGGAGCCGGC 963
Query 1359 ATGACAGTGC-AAGGAGTTCTGAAGGTGCA---GAGAATATAGAAGAGCTAGAGATGTTG 1414
|||||||||| ||| || || ||||| ||| ||||||||||| |||||||||||||||
Sbjct 964 ATGACAGTGCTAAG-AGCTCAGAAGGCGCAACCGAGAATATAGAGGAGCTAGAGATGTTG 1022
Query 1415 CTGGAAGCTTACTTTGTCGTCATTGATAGTACTCTAAACAAG-TTGACATCGTTAAAGGA 1473
|||||||| |||||||| ||||| ||||| ||||| |||||| || || |||||||||||
Sbjct 1023 CTGGAAGCATACTTTGTTGTCATCGATAGCACTCTCAACAAGCTT-ACCTCGTTAAAGGA 1081
Query 1474 GTACATTGATGACACTGAAGATTTCATTAACATTCAACTGGATAATGTGCGGAATCAGCT 1533
||||| ||||| || || |||||||| ||||||||| ||||||| || |||||||||||
Sbjct 1082 ATACATCGATGATACCGAGGATTTCATCAACATTCAATTGGATAACGTACGGAATCAGCT 1141
Query 1534 GATCCAGTTCGAGTTGCTTCTGACGACTGCAACGTTTGTTGTAGCCATATTTGGGGTCGT 1593
|||||| ||||| |||| || || ||||| || || ||||||||||| || ||||| ||
Sbjct 1142 GATCCAATTCGACCTGCTGCTAACTACTGCGACATTCGTTGTAGCCATCTTCGGGGTTGT 1201
Query 1594 TGCTGGGATCTTTGGGATGAACTTTGAGATAGACTTCTTC-AATCAGCCAGGTGCATTCA 1652
|| ||||||||||||||||| ||||| ||||||||||| || ||||| ||||| ||||
Sbjct 1202 AGCCGGGATCTTTGGGATGAATTTTGAAATAGACTTCTTTGAA-CAGCCTGGTGCTTTCA 1260
Query 1653 GATGGGTACTCATAATTACTGGAGTATGTGGCTTTGT-GATATTTTCGGCATTCGTCTGG 1711
|||||| || | ||||||||||| |||||| |||| | |||||| |||||||||||||
Sbjct 1261 AATGGGTTCTGACCATTACTGGAGTGTGTGGCCTTGTTG-TATTTTTGGCATTCGTCTGG 1319
Query 1712 TTCTTCAA--GTACAGAAGACTCATGCCTCTAT-AAGA 1746
|||| ||| ||| |||||||||||||||| | ||||
Sbjct 1320 TTCTACAAACGTA--GAAGACTCATGCCTCTGTGAAGA 1355
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68829072715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5