BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16022.1

Length=472
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920509 jgi|Araly1|920509|scaffold_101790.1                        470    5e-132


> Ahg920509 jgi|Araly1|920509|scaffold_101790.1
Length=428

 Score =  470 bits (254),  Expect = 5e-132
 Identities = 333/369 (90%), Gaps = 14/369 (4%)
 Strand=Plus/Plus

Query  83   TCCACAAAGCTCAGACCAGCAATGGGGACAGTATCTGTTGCATTGTTCTTCCTCTTCCTC  142
            ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1    TCCACGAAGCTCAGACCAGCAATGGGGACAGTATCTGTTGCATTGGTCTTCCTCTTCCTC  60

Query  143  GTCTTTCTCTGCTTCCCCATCTCATTGGACTCCCAGAAACTCGATCCATCGACGAGCTCA  202
            |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||  
Sbjct  61   GTCTTTCTCTGCTTCCCCATCTCATTAGACTCCCAGAAACTCGATCCAGCGACGAGCTTG  120

Query  203  CTCAACCAAGAAGAAGCCCATG-AGC-TT-ACAATCAAAGACATAAAAGGTGGAGAAGAT  259
            |||||||||||| ||||||||| ||  || | ||||||||| |||   || |||||||||
Sbjct  121  CTCAACCAAGAACAAGCCCATGCAGAGTTTATAATCAAAGATATA---GGAGGAGAAGAT  177

Query  260  GACAAGAGCATCGACATCTTCCGGGCGGGGAAAGGAGGTCGTGGAGTTACAGGCGGAAAA  319
             ||||||||||||||||||||||||| ||||||||||||  |||||||||||| |||| |
Sbjct  178  AACAAGAGCATCGACATCTTCCGGGCAGGGAAAGGAGGTAATGGAGTTACAGGTGGAAGA  237

Query  320  GGTGG---AGGCCGGAAAGCATCTCCaaaaaaaCGTAATGCCGCCATGGACCAC-CGGCC  375
            || ||   ||||||||||||||||||||||||| |||||||||||||||||||| || ||
Sbjct  238  GGCGGCGGAGGCCGGAAAGCATCTCCAAAAAAAAGTAATGCCGCCATGGACCACACG-CC  296

Query  376  ACCGTTGTTCTTCTCCGCTGCCTCCGTTCTCTTTACTGGTTTTATAATGTTTTCATTAAC  435
            | ||||   |||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct  297  AACGTT---CTTCTCCGCTGCCTCCATTCTCTTTACTGGTTGTATAATGTTTTCATTAAC  353

Query  436  TTCTTTCAA  444
            |||||||||
Sbjct  354  TTCTTTCAA  362



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17093703872


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5