BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16030.1
Length=2330
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471804 jgi|Araly1|471804|fgenesh2_kg.1__1758__AT1G16030.1 3197 0.0
> Ahg471804 jgi|Araly1|471804|fgenesh2_kg.1__1758__AT1G16030.1
Length=2227
Score = 3197 bits (1731), Expect = 0.0
Identities = 2081/2248 (93%), Gaps = 32/2248 (1%)
Strand=Plus/Plus
Query 57 TTTTTCTCGAAATGTCTCGTTCCTCTCGTCGGATTCGTATATATAGCTTCTTCCATCGTT 116
||||||||||||||||||||| ||||||||| ||||||||||||| || ||||||||| |
Sbjct 1 TTTTTCTCGAAATGTCTCGTTTCTCTCGTCGAATTCGTATATATATCTGCTTCCATCGAT 60
Query 117 TCCGATTCTTCATCAAACAGATAAACAAACAAAAGAAATCGAAAAACCTCAC-TTCCAAT 175
|||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 61 TCCGATTCTTCATCAACCAGATAAACAAACAACAGAAATCGAAAAACCTCACTTTCCAAT 120
Query 176 TTCATTCAATTACTGAAGCttttttttAGCAACAATGGCGACGAAATCAGAGAAAGCTAT 235
|||| |||||||||||||||||||| ||| ||||||||||||||||||||| || |||||
Sbjct 121 TTCAATCAATTACTGAAGCTTTTTTCTAGTAACAATGGCGACGAAATCAGACAAGGCTAT 180
Query 236 TGGTATCGATCTCGGCACTACATACAGTTGTGTCGGAGTTTGGATGAATGATCGTGTGGA 295
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGAATCGATCTCGGCACTACATACAGTTGTGTCGGAGTTTGGATGAATGATCGTGTGGA 240
Query 296 GATCATTCCGAACGATCAGGGAAACCGTACGACGCCGTCGTACGTCGCCTTCACTGATAC 355
||| || || ||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 241 GATTATCCCTAACGATCAGGGAAACCGTACGACACCGTCGTACGTCGCCTTCACTGACAC 300
Query 356 TGAGCGGCTGATCGGAGACGCGGCAAAGAATCAAGTGGCTTTGAATCCTCAGAACACTGT 415
|||||||||||| |||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 301 TGAGCGGCTGATTGGAGACGCCGCGAAGAATCAAGTGGCGTTGAATCCTCAGAACACTGT 360
Query 416 ATTCGATGCGAAACGTCTCATCGGAAGGAAGTTCTCTGATCCTTCTGTTCAGAGTGACAT 475
|||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 361 CTTCGATGCGAAACGTCTCATTGGAAGGAAATTCTCTGATCCTTCTGTTCAGAGTGATTT 420
Query 476 ACTCCACTGGCCGTTCAAGGTTGTTTCCGGCCCCGGTGAGAAGCCGATGATAGTCGTTTC 535
|| ||||||||||||||||||||||| || ||||| || || ||||||||||| || ||
Sbjct 421 GCTTCACTGGCCGTTCAAGGTTGTTTCTGGTCCCGGAGATAAACCGATGATAGTGGTCTC 480
Query 536 GTATAAGAATGAAG-AGAAGCAGTTTTCTCCTGAGGAAATATCTTCCATGGTGTTGGTGA 594
|| ||||| | || |||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 481 TTACAAGAACG-AGCAGAAGCAGTTCTCTCCTGAGGAGATATCTTCCATGGTGTTGGTGA 539
Query 595 AGATGAAGGAAGTCGCTGAGGCTTTCTTAGGTCGCAC-AGTTAAAAACGCCGTTGTAACG 653
||||||||||||| |||||| ||||| |||||| ||| | ||||||||||||||||||||
Sbjct 540 AGATGAAGGAAGTAGCTGAGTCTTTCCTAGGTCACACTA-TTAAAAACGCCGTTGTAACG 598
Query 654 GTTCCGGCGTATTTTAACGATTCGCAGAGACAGGCTACGAAGGACGCCGGAGCTATCTCT 713
|||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| |||
Sbjct 599 GTTCCGGCGTATTTCAACGATTCGCAGAGGCAGGCAACGAAGGACGCCGGAGCTATTTCT 658
Query 714 GGGCTTAATGTTTTGAGGATAATCAATGAGCCGACTGCTGCAGCTATAGCTTATGGTTTG 773
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 GGGCTGAATGTTTTGAGGATAATCAATGAGCCGACTGCTGCAGCTATAGCTTACGGTTTG 718
Query 774 GATAAGAAGGGTACGAAGGCCGGTGAGAAGAACGTTTTGATTTTCGATCTCGGTGGTGGA 833
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GACAAGAAGGGTACCAAAGCCGGTGAGAAGAACGTTTTGATTTTCGATCTCGGTGGTGGA 778
Query 834 ACTTTTGATGTTTCGCTGTTGACGATTGAAGAAGGTGTCTTTGAAGTGAAAGCTACTGCT 893
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 779 ACTTTTGATGTTTCGCTGTTGACGATTGAAGAAGGTGTTTTTGAAGTGAAAGCTACTGCT 838
Query 894 GGAGATACTCATCTTGGTGGTGAAGACTTTGACAACAGACTTGTGAACCATTTCGTTGCG 953
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 GGAGATACTCATCTTGGTGGTGAAGACTTTGACAACAGACTTGTGAATCATTTCGTTGCG 898
Query 954 GAGTTTAGGAGGAAACACAAGAAGGATATTGCTGGGAATGCGAGAGCTCTTAGGAGGCTA 1013
||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||| |
Sbjct 899 GAGTTTAAGAGGAAACACAAGAAGGATATTTCTGGGAATGCGAGGGCTCTTAGGAGGTTG 958
Query 1014 AGGACAGCTTGTGAGAGAGCAAAGAGAACACTTTCGTCCACGGCTCAGACGACTATTGAG 1073
||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||
Sbjct 959 AGGACTGCTTGTGAGAGAGCAAAGAGAACGCTTTCTTCCACAGCTCAGACGACTATTGAG 1018
Query 1074 ATTGATTCTCTGCACGAGGGTATTGACTTCTATGCGACGATATCACGTGCAAGGTTTGAG 1133
||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1019 ATTGATTCTTTGCACGAGGGTATTGACTTCTATGCGACGATCTCACGTGCGAGGTTTGAG 1078
Query 1134 GAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTGGAGAAAGTTCTTAAAGAC 1193
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 GAGATGAACATGGATTTGTTCAGGAAATGTATGGATCCTGTAGAGAAAGTTCTTAAAGAC 1138
Query 1194 GCCAAGCTCGACAAGAGCAGTGTGCACGATGTTGTTCTGGTTGGAGGGTCGACGAGGATT 1253
|||||| ||||||||||||||||||||||||| |||||||| ||||| || |||||||||
Sbjct 1139 GCCAAGATCGACAAGAGCAGTGTGCACGATGTGGTTCTGGTCGGAGGATCTACGAGGATT 1198
Query 1254 CCGAAAATTCAACAGCTTTTGCAAGATTTCTTTAATGGGAAGGAGTTATGCAAGAGCATA 1313
|||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||
Sbjct 1199 CCGAAAATTCAACAGCTTTTGCAAGATTTCTTCAACGGGAAGGAGCTATGCAAGAGCATA 1258
Query 1314 AACCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCTGCGATTCTTACAGGTGAA 1373
||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 1259 AACCCTGATGAAGCTGTTGCCTATGGAGCTGCGGTTCAGGCTGCGATACTGACTGGTGAA 1318
Query 1374 GGAAGTGAAAAGGTCCAGGATCTTCTGCTTCTTGATGTTGCTCCGCTTAGCCTTGGACTT 1433
||||| || |||||||| |||||||||||||||||||| || || || ||||||||| ||
Sbjct 1319 GGAAGCGACAAGGTCCAAGATCTTCTGCTTCTTGATGTGGCGCCCCTAAGCCTTGGAATT 1378
Query 1434 GAGACAGCAGGTGGGGTCATGACTGTGTTAATTCCAAGAAACACGACGGTTCCTTGTAAG 1493
|||||||| |||||||| |||| ||||||||| || || || ||||||||||||||||||
Sbjct 1379 GAGACAGCCGGTGGGGTGATGAGTGTGTTAATCCCGAGGAATACGACGGTTCCTTGTAAG 1438
Query 1494 AAGGAGCAAGTGTTCTCTACGTATGCAGACAATCAACCAGGCGTTCTGATCCAAGTCTAC 1553
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1439 AAGGAGCAAGTGTTCTCTACGTATGCGGACAATCAGCCAGGCGTTCTGATCCAAGTCTAT 1498
Query 1554 GAAGGAGAACGTGCAAGGACCAGAGATAACAACCTTCTCGGAACTTTCGAGCTCAAGGGC 1613
|||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1499 GAAGGAGAACGTGCAAGGACCAAAGATAACAACCTTCTCGGGACTTTCGAGCTCAAGGGC 1558
Query 1614 ATTCCTCCTGCTCCACGTGGGGTTCCTCAAATCAATGTTTGCTTCGACATTGACGCGAAT 1673
||||||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1559 ATTCCTCCTGCACCACGTGGAGTTCCTCAAATCAATGTTTGCTTTGACATGGACGCGAAT 1618
Query 1674 GGGATCTTAAATGTGTCGGCTGAGGATAAAACCGCTGGTGTGAAGAACCAGATCACGATC 1733
|||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 1619 GGGATCCTAAATGTGTCGGCGGAGGATAAAACCGCTGGTGTAAAGAACCAGATCACGATC 1678
Query 1734 ACCAACGACAAAGGAAGGTTGAGTAAAGAGGAGATAGAGAAGATGGTGCAAGATGCTGAG 1793
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1679 ACGAACGACAAAGGAAGGTTGAGTAAAGAGGAGATAGAGAAGATGGTGCAAGATGCGGAG 1738
Query 1794 AAGTACAAGGCTGAGGATGAGCAAGTGAAGAAGAAGGTGGAGGCCAAGAATTCGCTTG-A 1852
||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| |
Sbjct 1739 AAGTACAAGGCTGAGGATGAGCAAGTGAAGAAGAAAGTGGAGGCCAAGAACTCG-TTGGA 1797
Query 1853 GAACTATGCTTACAACATGAGAAACACTATCAAGGATGAGAAACTCGCACAGAAACTA-A 1911
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1798 GAACTATGCTTACAACATGAGAAACACTATCAAGGATGAGAAACTCGCGCAGAAGTTAGA 1857
Query 1912 CTCAAGAGGATAAGCAGAAGATTGAGAAGGCGATTGATGAAACAATTGAATGGATCGAAG 1971
||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 1858 -TCAAGAGGATAAGCAGAAGATTGAGAAGGCGATTGATGAGACAATCGAATGGATTGAAG 1916
Query 1972 GAAACCAGCTGGCGGAAGTTGATGAGTTTGAGTACAAGTTGAAAGAGTTAGAAGGTATTT 2031
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1917 GAAACCAGCTGGCGGAAGTTGATGAATTTGAGTACAAGTTGAAAGAGTTGGAAGGTATTT 1976
Query 2032 GCAACCCAATCATCTCAAAGATGTATCAGGGTGGTGCTGCTG--C----TGGAGGTATGC 2085
||||||||||||||||||||||||||||||||||||| | | | |||||||||||
Sbjct 1977 GCAACCCAATCATCTCAAAGATGTATCAGGGTGGTGCCGGAGGTCCCACTGGAGGTATGC 2036
Query 2086 CGACAGATGGTGATTTCAGTAGCTCAGGTGCTGCTGGAGGTCCCAAGATCGAAGAGGTGG 2145
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2037 CGACAGATGGTGGTTTCAGTAGCTCAGGTGGTGCTGGAGGTCCCAAGATCGAAGAGGTGG 2096
Query 2146 ATTAGAGCGTGTTTAGTGTGTTAAGACGAAAGAGTGGCTTTGGACCATTAGCGAGTCTTT 2205
| || | ||||| || |||| ||||| ||||||||||||||||||||| ||||||||||
Sbjct 2097 ACTAAACCGTGTGCAGAGTGTAAAGACAAAAGAGTGGCTTTGGACCATTTGCGAGTCTTT 2156
Query 2206 TCTTTGTATTGTGTCAAATAGTGTTGTGTACTCATAGGTGTTTTGCTAGTGAACGATAGT 2265
|||| | || | | ||| || | | ||||||||||||||||||||| |||||
Sbjct 2157 -CTTT-T---GT---A--T--TGT-GT-T-C--ATAGGTGTTTTGCTAGTGAACTATAGT 2199
Query 2266 TGTATGCTTTACATATTTCAGCTGTTTC 2293
||||||||||||||||||||| ||||||
Sbjct 2200 TGTATGCTTTACATATTTCAGTTGTTTC 2227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87759924480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5