BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16040.1
Length=848
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911413 jgi|Araly1|911413|Al_scaffold_0001_1667 898 0.0
> Ahg911413 jgi|Araly1|911413|Al_scaffold_0001_1667
Length=687
Score = 898 bits (486), Expect = 0.0
Identities = 627/693 (90%), Gaps = 18/693 (3%)
Strand=Plus/Plus
Query 13 ATGAAAGAGGCGAAGGAGAAGAAGAATCCAGAAATCTCCGTTAGTATCACGATATCAACT 72
||||||||||||||| |||||||||| ||||||| | | || || | |||||||| ||
Sbjct 1 ATGAAAGAGGCGAAGAAGAAGAAGAAGCCAGAAACCACTATTGGTGTGTCGATATCAGCT 60
Query 73 -TGGGGGGCTTT-TGCTGTTTATGTGATTACTGGGTTATTTCTGATCTTCGGATTTC-AC 129
| ||||||||| | |||||||| ||||||||||||||| |||| | ||||| |||
Sbjct 61 CT-GGGGGCTTTCT-CTGTTTATTTGATTACTGGGTTATCTCTGGCCGTCGGA-TTCTGG 117
Query 130 GTGGTCCGTAACAAATACTCTGTCGATCTCATTTCTGATCCAACTCTCACTCTGCGTCTC 189
||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 118 GTGGTCCGTAATATTTACTCTGTCGATCTCATTTCTGATCCATCTCTCACTCTGCGTCTC 177
Query 190 CTATGGATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCA 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 CTATGGATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCA 237
Query 250 GAGAAATGCTCGTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCGGTGCT 309
||||||||||||||||||||||||||||| |||||| |||| ||||| ||| |||| |||
Sbjct 238 GAGAAATGCTCGTACTTTAGAGCTGTTGGACGAAGCATAGTAGGACTCATTTCCGGGGCT 297
Query 310 CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAATCTCTATCA 369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 298 CTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAATCTCTACCA 357
Query 370 AAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACGGTTGTACCAGCAACTGCAGTT 429
| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 358 AGAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACGGTTGTACCAGCGACTGCAGTT 417
Query 430 TTAGGTGCATCATGGATAGATTGGCATCGTATCTTTGCTTCACTAAAACCAA-TCGGAAT 488
|| ||||||||||||| ||||||||||||| | ||||||||||| ||||||| | ||||
Sbjct 418 TTTGGTGCATCATGGACAGATTGGCATCGTGTGTTTGCTTCACTTAAACCAACT-GGAAA 476
Query 489 TATAGAACATATGCTCTT-AGTTCCAGCATATGGAGCAATTATTGGAGGATGGTTTGGAG 547
| ||||| ||||| |||| | |||||||||||||||||||||||||||| ||||||||||
Sbjct 477 TGTAGAATATATGATCTTGA-TTCCAGCATATGGAGCAATTATTGGAGGTTGGTTTGGAG 535
Query 548 CTTGGCCTATGCCACTTGACTGGGAAAGACCATGGCAGGAATGGCCTATATGTGTGTGTT 607
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 536 CTTGGCCTATGCCACTTGACTGGGAAAGGCCATGGCAGGAGTGGCCTATATGTGTGTGTT 595
Query 608 ATGGAGCTATAGGAGGCTACATTGGTGGACAAATGGT------GAGTTTGTTGACTCTTC 661
|||||||||||||||||||||||| ||||||||| || ||||||| ||| |||||
Sbjct 596 ATGGAGCTATAGGAGGCTACATTGTTGGACAAATTGTCTCCTTGAGTTTGGTGATTCTTC 655
Query 662 TCAGCGAA-CACAAGAATTTGAAGCTAGCCTAG 693
|||| ||| ||||||||| ||||||||||||||
Sbjct 656 TCAG-GAAACACAAGAATATGAAGCTAGCCTAG 687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31375160691
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5