BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16060.1
Length=1220
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471806 jgi|Araly1|471806|fgenesh2_kg.1__1760__AT1G16060.1 1720 0.0
Ahg477146 jgi|Araly1|477146|fgenesh2_kg.2__2276__AT1G79700.2 649 0.0
> Ahg471806 jgi|Araly1|471806|fgenesh2_kg.1__1760__AT1G16060.1
Length=1196
Score = 1720 bits (931), Expect = 0.0
Identities = 1101/1181 (93%), Gaps = 20/1181 (2%)
Strand=Plus/Plus
Query 44 ttcctcttcttTTATGTTCATCGCCGTCGAAGTTTCTCCGGTAATGGAAGACATCACACG 103
||||||||| ||||||| |||||||||||||||||||||||| |||||||| ||||||||
Sbjct 29 TTCCTCTTC-TTTATGTACATCGCCGTCGAAGTTTCTCCGGTGATGGAAGAGATCACACG 87
Query 104 GCAGAGCaaaaaaaCTTCGGTTGAGAATGAAACCGGCGATGATCAGTCAGCAACATCAGT 163
| ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 88 GAAGAGCAAGAAAACATCCGTTGAGAATGAAACCGGCGATGATCAGTCAGCAACATCAGT 147
Query 164 AGTCCTTAAAGCTAAACGCAAACGCCGATCGCAACCACGAGACGCTCCACCCCAACGTAG 223
|||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||
Sbjct 148 AGTCGTTAAAGCTAAACGCAAACGCCGATCACAACCACGAGACGCTCCTCCACAACGCAG 207
Query 224 CTCCGTCCATAGAGGCGTCACAAGGCATCGATGGACTGGAAGGTACGAAGCACATTTGTG 283
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 208 CTCCGTCCATAGAGGCGTCACCAGGCATCGATGGACTGGAAGGTACGAAGCACATTTATG 267
Query 284 GGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGGC 343
||||||||||||||||||||| ||||||| |||||||||||||| | ||||||
Sbjct 268 GGATAAGAATAGTTGGAACGAGACTCAGAGCAAGAAAGGAAGAC------A---AGGGGC 318
Query 344 ATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGG 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 ATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGGG 378
Query 404 ACGAGACACCATCTTGAACTTCCCTTTGTGTAATTATGAAGAAGACATCAAAGAAATGGA 463
|||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||
Sbjct 379 ACGAGACACCATCTTGAATTTCCCTTTGTGTAACTATGGAGAAGACATCAAGGAAATGGA 438
Query 464 AAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTCACG 523
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 439 AAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGGAAAAGTAGTGGGTTCTCACG 498
Query 524 AGGTGTATCAAAATACAGAGGCGTTGCAAAGCATCACCACAATGGGAGATGGGAAGCTCG 583
|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 499 TGGTGTATCAAAATATAGAGGCGTTGCAAAGCATCACCATAATGGGAGATGGGAAGCTCG 558
Query 584 AATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGAAGA 643
||| |||||||| ||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 559 AATTGGAAGAGTCTTTGGCAATAAATATTTATACCTTGGAACTTACGCTACACAAGAAGA 618
Query 644 AGCAGCTATAGCGTACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTACTAA 703
||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 619 AGCGGCTATAGCGTATGATATCGCAGCAATCGAGTACCGTGGACTTAACGCCGTTACTAA 678
Query 704 CTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCTATCGATACCGCGAA 763
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||
Sbjct 679 CTTCGACATCAGCCGTTATCTGAAACTCCCGGTGCCGGAGAACCCCATCGACGCCGCTAA 738
Query 764 TAATCTCCTCGAGAGTCCGCATTCTGATCTTAGCCCATTTATAAAACCTAAC-CACGAGT 822
||||||||| ||||||||||||||||||| |||||||||||||| |||| | |||||||
Sbjct 739 TAATCTCCTGGAGAGTCCGCATTCTGATCCCAGCCCATTTATAAACCCTA-CTCACGAGT 797
Query 823 CTGACTTATCACAGAGTCAATCTTCGTCAGAGGACAACGATGATCGGAAAACAAAGCTCT 882
|||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||
Sbjct 798 CTGATTTATCACAGAGTCAATCTTCATCAGACGATAACGATGATCGGAAAACAAAGCTCT 857
Query 883 TGAAGTCGTCACCTTTAG-TGGCAGAGGAGGTAATCGGACCATCGACGCCACCTGAGATT 941
| ||||||||||||||| || ||||||| ||||||||||||||||||||||| ||||||
Sbjct 858 TAAAGTCGTCACCTTTAAATG-CAGAGGAAGTAATCGGACCATCGACGCCACCGGAGATT 916
Query 942 GCTCCGCCTCGTCGGAGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCC 1001
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 GCTCCGCCTCGCCGGAGCTTCCCGGAAGATATCCAGACGTATTTCGGGTGTCAAAACTCC 976
Query 1002 GGCAAGTTAACGGCGGAGGAAGATGATGTTATCTTCGGTGATTTAGATTCTTTCCTTACG 1061
|||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 977 GGCAAGCTAACGACGGAGGAAGATGACGTTATCTTCGGTGATTTAGATTCTTTCCTTACG 1036
Query 1062 CCTGATTTCTACAGCGAGTTAAATGATTGCTAAAGTGTTGTTCT--TCTGATAAGTTTTG 1119
||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct 1037 CCTGATTTCTACAGCGAGTTAAATGATTGCTAAAGTGTTCTTCTGATTTGATAAGTTTTG 1096
Query 1120 TTTTTTAGTTGTTCAGAATCTCGGTTGTGAAAATCAACATTGACACAT--CGATTATTCT 1177
||||| |||| || ||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1097 TTTTT-AGTTTTTTGGAATCTCGGTTGTGAAAATCAGCATTGACACATATCGGTTATTCT 1155
Query 1178 TTCTTGTGACAATCTTAT-ATAATAAAGTTTGAATCTTTTT 1217
|||||||||||||||||| ||||||||||||||||||||||
Sbjct 1156 TTCTTGTGACAATCTTATTATAATAAAGTTTGAATCTTTTT 1196
> Ahg477146 jgi|Araly1|477146|fgenesh2_kg.2__2276__AT1G79700.2
Length=977
Score = 649 bits (351), Expect = 0.0
Identities = 498/569 (88%), Gaps = 9/569 (2%)
Strand=Plus/Plus
Query 165 GTCCTTAAAGCTAAACGCAAACGCCGA-TCGCAACCACGAGACGCTCCACCCCAACGTAG 223
||| ||||| | ||||||||||| | |||| || ||| ||||||| || ||||| ||
Sbjct 118 GTCTTTAAATCCAAACGCAAACG-TAAGTCGCCGCCTCGAAACGCTCCTCCTCAACGCAG 176
Query 224 CT-CCGTCCATAGAGGCGTCACAAGGCATCGATGGACTGGAAGGTACGAAGCACATTTGT 282
|| || | |||||||||||||||||||| |||||||||| || |||||||| |||||||
Sbjct 177 CTCCCCT-TATAGAGGCGTCACAAGGCATAGATGGACTGGGAGATACGAAGCGCATTTGT 235
Query 283 GGGATAAGAATAGTTGGAACGAAACTCAGACCAAGAAAGGAAGACAAGTATATTTAGGGG 342
|||||||||| || |||||||| || ||||||||||||||| ||||||| ||| ||||||
Sbjct 236 GGGATAAGAACAGCTGGAACGATACACAGACCAAGAAAGGACGACAAGTTTATCTAGGGG 295
Query 343 CATATGACGAGGAAGATGCAGCAGCACGTGCCTACGACTTAGCAGCATTGAAATATTGGG 402
| || ||||| ||||| ||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 296 CTTACGACGAAGAAGAAGCAGCAGCACGTGCCTACGACTTGGCAGCATTGAAGTACTGGG 355
Query 403 GACGAGACACCA-TCTTGAACTTCCCTTTG-TGTAATTATGAAGAAGACATCAAAGAAAT 460
||||||||| || ||||||||||||||||| || | |||||| |||||| ||||||||||
Sbjct 356 GACGAGACA-CACTCTTGAACTTCCCTTTGCTG-ACTTATGACGAAGACGTCAAAGAAAT 413
Query 461 GGAAAGCCAGTCAAAGGAAGAGTATATTGGATCTTTGAGAAGAAAAAGTAGTGGGTTTTC 520
|||| |||| || |||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 414 GGAAGGCCAATCCAAGGAAGAGTATATTGGATCATTGAGAAGAAAAAGTAGTGGATTTTC 473
Query 521 ACGAGGTGTATCAAAATACAGAGGCGTTGCAAAGCATCACCACAATGGGAGATGGGAAGC 580
||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct 474 TCGAGGTGTATCAAAATACAGAGGCGTTGCAAGGCATCACCATAATGGGAGATGGGAAGC 533
Query 581 TCGAATCGGAAGAGTGTTTGGCAATAAATATTTATACCTTGGAACTTACGCGACGCAAGA 640
| |||| ||||| |||||||| ||||||||| |||| |||||||| ||||| ||||||||
Sbjct 534 TAGAATTGGAAGGGTGTTTGGTAATAAATATCTATATCTTGGAACATACGCCACGCAAGA 593
Query 641 AGAAGCAGCTATAGCGTACGATATCGCAGCTATCGAGTACCGTGGACTCAACGCCGTTAC 700
||||||||| || || ||||| ||||| || || |||||||||||||| |||||||||||
Sbjct 594 AGAAGCAGCAATCGCCTACGACATCGCGGCAATAGAGTACCGTGGACTTAACGCCGTTAC 653
Query 701 TAACTTCGACATCAGCCGTTATCTGAAAC 729
|| |||||| ||||||||||||| ||||
Sbjct 654 CAATTTCGACGTCAGCCGTTATCT-AAAC 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45556885815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5