BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16070.2
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471808 jgi|Araly1|471808|fgenesh2_kg.1__1762__AT1G16070.1 2019 0.0
> Ahg471808 jgi|Araly1|471808|fgenesh2_kg.1__1762__AT1G16070.1
Length=1329
Score = 2019 bits (1093), Expect = 0.0
Identities = 1264/1344 (94%), Gaps = 21/1344 (2%)
Strand=Plus/Plus
Query 1 TGTCAAACACCTGTTTCTAGATTCATGTCTTCAAAATCTATAAAG-ATATAAACTTAGCT 59
||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 1 TGTCAAACACCTGTTTCTAGATTTATGTCTTCAAATTCTATAAAGAATATAAACTTAGCT 60
Query 60 CCCAGAAAGTTCTAAACTTGATACTTGAAAGCAATCCATCCAGAAAGGG--aaaaaaaaC 117
||||||||||||| | | |||||||||||| | |||||||||| |||||||||
Sbjct 61 CCCAGAAAGTTCT--A----A-ACTTGAAAGCAA--C--CCAGAAAGGGAAAAAAAAAAC 109
Query 118 ATGGCTGGTTCGAGAAAAGTGAATGATTTGTTGGAGGAAAATAAGGGAAATGTGGACACA 177
||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 110 ATGGCTGGTTCCAGAAAAGAGAATGATTTGTTGGAGGAAAATAAGGAAAATGTGGACACA 169
Query 178 AT-TACAGGGTCTTTATCCACTCAAAAGGGAGAGGATAAGGAGAATGTGTCGCCGGAGAA 236
| | || ||||||| ||||| |||||| ||||||||||||||||||||||||||| ||
Sbjct 170 GTCT-CAAGGTCTTTCTCCACAAAAAAGGTAGAGGATAAGGAGAATGTGTCGCCGGAAAA 228
Query 237 AGTCTCTACCTCTGTGGAAACTCGGAAACTAGATCGAGCTTTGAAGTCTCAATCGATGAA 296
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 229 AGTATCTACCTCTGTGGAAACTCGGAAACAAGATCGAGCTTTGAAGTCTCAATCGATGAA 288
Query 297 GGGTAACTCTGGGTTTCCAACGGAAGTTACAAATTTCAAATCTTTCTCAACTGGTGGTCG 356
|||||||||||| ||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 289 GGGTAACTCTGGCTTTCCCACGGAAGTTACAAATTTCAAGTCTTTCTCAACGGGTGGTCG 348
Query 357 AACAGCTCTGAAGCAGTCATCACTGCAAGCGTGTATGCAGAAGAACAGTGAGGTTGATAA 416
||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 349 AACGGCTCTGAAGCAGACATCGCTGCAAGCGTGTATGCAGAAGAACAGTGAGGTTGATAA 408
Query 417 GAGTAGTTTCGGAATGAAAACTTGGACTAGTGTTGATTCAGAGCATTCAAGTTCGTTGAA 476
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 GGGTAGTTTCGGAATGAAAACTTGGACTAGTGTTGATTCAGAGCATTCGAGTTCGTTGAA 468
Query 477 AGTGTGGGAGTTTTCGGATTCTGAAGCTGCCCCTGCTTCCTCTTGGTCTACTTTGCCCAA 536
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 469 AGTGTGGGAGTTTTCGGATTCTGAAGCTGCTCCTGCTTCCTCTTGGTCTACTTTGCCCAA 528
Query 537 CAGGGCTTTGTTGTGCAAGACACTACCTTTGGATGTGGGAAGATGCACTTGTCTGATTGT 596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 529 CAGGGCTTTGTTGTGCAAGACACTACCTTTGGATGTGGGTAGATGCACTTGTCTGATTGT 588
Query 597 GAAAGAACAATCACCTGAAGGCTTGAGCCACGGATCTGTATATTCACTTTATACACATGA 656
|||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||
Sbjct 589 GAAAGAACAATCACCTGAAGGCTTAAGCGGCGGATCTCTATATTCACTTTATACACATGA 648
Query 657 AGGTCGGGGGCGTAAAGACCGGAAGTTAGCAGTTGCTTACCATAGCCGACGTAATGGGAA 716
||||||||||||||||||||| ||| |||| ||||||| |||||| ||||||||| ||||
Sbjct 649 AGGTCGGGGGCGTAAAGACCGAAAGCTAGCTGTTGCTTTCCATAGGCGACGTAATAGGAA 708
Query 717 ATCTATATTTAGGGTGGCACAGAATGTTAAGGGATTGCTGTGCAGTTCGGATGAAAGTTA 776
||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 709 ATCCATATTTAGGGTGGCACAGAATGTTAAGGGACTATTGTGCAGTTCGGATGAAAGTTA 768
Query 777 TGTCGGTTCCATGACGGCTAATCTCTTGGGTTCCAAGTACTACATATGGGACAAGGGAGT 836
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 769 TGTCGGTTCTATGACGGCTAATCTCTTGGGTTCCAAGTACTACATATGGGATAAGGGAGT 828
Query 837 TCGAGTTGGTTCTGTAGGTAAAATGGTGAAGCCGCTTCTTTCGGTTGTAATATTCACACC 896
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 829 TCGAGTTGGTTCTGTAGGTAAAATGGTGAAGCCGCTTCTTTCCGTTGTAATATTCACACC 888
Query 897 CACCATAACAACTTGGACAGGGAGCTACAGAAGAATGAGAACTTTGCTACCAAAGCAGCA 956
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 889 CACCATAACAACTTGGACAGGGAGGTACAGAAGAATGAGAGCTTTGCTACCAAAGCAGCA 948
Query 957 GCCAATGCAGAAAAACAACAATAAGCAGGTTCAACAAGCTAGTAAACTACCGCTTGATTG 1016
|||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 949 GCCACTGCAGAAGAACAACAATAAGCAGGTTCAGCAAGCTAGTAAACTACCGCTTGATTG 1008
Query 1017 GCTTGAGAATAAGGAAAAAATTCAGAAGCTATGCTCAAGGATACCACATTACAACAAAAT 1076
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GCTTGAGAATAAGGAAAAAGTTCAGAAGCTATGCTCAAGGATACCACATTACAACAAAAT 1068
Query 1077 CTCCAAGCAGCATGAGTTAGACTTCAGAGACAGAGGAAGAACAGGACTGAGAATACAGAG 1136
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CACCAAGCAGCATGAGTTAGACTTCAGAGACAGAGGAAGAACAGGACTGAGAATACAGAG 1128
Query 1137 CTCGGTGAAGAACTTTCAGCTAACACTCACGCAGGAGACTCCAAGGCAGACAATTCTTCA 1196
||||||||||||||||||||||||||||||| || | | |||||||||||| ||||||||
Sbjct 1129 CTCGGTGAAGAACTTTCAGCTAACACTCACGGAG-A-A-TCCAAGGCAGACGATTCTTCA 1185
Query 1197 AATGGGGAGAGTTGACAAAGCAAGATATGTAATCGACTTCAGGTATCCATTCTCAGGCTA 1256
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1186 AATGGGAAGAGTGGACAAAGCAAGATATGTAATCGATTTCAGGTATCCATTCTCGGGCTA 1245
Query 1257 CCAAGCATTCTGCATTTGCTTGGCTTCTATTGATTCCAAGCTTTGTTGTACTGTTTGATC 1316
|||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1246 CCAAGCGTTCTGCATTTGCTTGGCTTCCATTGATTCCAAGCTTTGTTGTACTATTTGATC 1305
Query 1317 ATTAATAAAC-GGACGAGTTCAAT 1339
|||| |||| |||||||||||||
Sbjct 1306 ATTA-TAAAATGGACGAGTTCAAT 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50093512938
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5