BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16080.1
Length=1285
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471810 jgi|Araly1|471810|fgenesh2_kg.1__1764__AT1G16080.1 1921 0.0
> Ahg471810 jgi|Araly1|471810|fgenesh2_kg.1__1764__AT1G16080.1
Length=1238
Score = 1921 bits (1040), Expect = 0.0
Identities = 1197/1267 (94%), Gaps = 33/1267 (3%)
Strand=Plus/Plus
Query 11 ACTGTTCAAATTAGTCCAACCAAAACCATGAGAGGCCAC-A-A-CATCGTCGAAGCCCAT 67
||||||||||||||| || ||||||||||||||||| | | ||||||||||||||||
Sbjct 1 ACTGTTCAAATTAGT----CC-AAACCATGAGAGGCCACAACATCATCGTCGAAGCCCAT 55
Query 68 TATTATCACCATGGCTAAAGCCAGTAGTACTCTGTTTGCTGTTTCCTGCTCCGCTTCAGC 127
||| ||||| |||||||||||||| || |||||||||||||| |||||||| ||||||||
Sbjct 56 TATCATCACTATGGCTAAAGCCAGCAGCACTCTGTTTGCTGTCTCCTGCTCAGCTTCAGC 115
Query 128 TCGTTTCTCTTTCCTCCGACGCTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATT 187
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 116 TCGTTTCTCTTTCCTCCGACACTCTGAATCTCTTAAACCCTCAGTTTCAAGAGCGAGATT 175
Query 188 CGCCGTTCCAATGGCTATGGCCGCCGCGTCAGCTGCCACCGCTAAAAAACTAGCGCCTGC 247
|||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 176 CGCCGTCCCAATGGCTATGGCCGCCGCGTCAGCTGCCACAGCTAAAAAACTAGCACCTGC 235
Query 248 TGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGCGAGGA 307
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 236 CGTGATTGTGGGTGGCGGAAGAGTCGGAAGGGCGTTACAGGAAATGGGTAATGGAGAGGA 295
Query 308 TTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTG 367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTTGTTGGTGAAGAGAGGAGAAGCAGTTCCGGTTGATTTTGAAGGACCCATTTTGGTTTG 355
Query 368 TACAAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGA 427
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TACTAGAAATGATGATCTCGATGCTGTTCTTGAAGCTACTCCTCAGTCTAGATGGAAAGA 415
Query 428 TTTGGTCTTCTTCCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGA 487
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 TTTGGTCTTCTTTCAAAATGGAATGATGGAGCCGTGGTTTGAGAGCAAAGGTTTGGGTGA 475
Query 488 TACAGACCAAGTGTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGG 547
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 TACAGACCAAGTCTTGGCCTATTTTGCTGTGTCAAAGCTCGGCGAGCCTCCCGTGGATGG 535
Query 548 AAAGACTGACACTAACCCAGAAGGTCTTACTGCTGCTTATGGAAAATGGGCTTCAGAGAT 607
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 536 AAAGACTGACACTAACCCAGAAGGTCTAACTGCTGCTTATGGAAAATGGGCTTCAGAGAT 595
Query 608 AGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCA 667
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AGCTGCAAGATTGCAATCTGGTGGCCTCTCTTGCAAGGTACTTGACAAAGAAGCTTTTCA 655
Query 668 GAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCA 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GAAGCAAATGTTGGAGAAACTCATTTGGATTTGTGCATTTATGCTTGTTGGAGCTCGTCA 715
Query 728 TCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGAGACTCAT 787
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 716 TCCAGGTGCAAGTGTTGGCACGGTGGAGAAAGAATACAGAGATGAAGTGTCGATACTCAT 775
Query 788 CCAAGAACTTGCAGCAGCTGCTGCCGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGT 847
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 776 CCAAGAACTCGCAGCAGCTGCTGCTGCGGAAAAAGGACTAACCTTTGAAGAGAACATGGT 835
Query 848 GGAAAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCAACTGCTGTTAAAGAATT 907
||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 836 GGAGAGACTATGTGCTTATTCACGAGCTGTTTCTCATTTCCCGACTGCTGTCAAAGAATT 895
Query 908 TAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCGGAAGGGCAACC 967
|||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 896 TAAATGGAGGAATGGTTGGTTTTATTCACTCTCAGAGAAGGCGATTGCAGAAGGGAAACC 955
Query 968 GGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAGAGCCAGTC 1027
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 GGATCCGTGTCCCCTCCATACCGAATGGCTGAAAGAGCTTAAAGTGATATAGAGCCAGTG 1015
Query 1028 TTTCTAAATTGTGAGTATCTGGATTAAGTATCATTCTTACATATTTTAAGTAGATGATCT 1087
| | || |||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1016 TGTGTA--TTGTGAGTATCTGGATTAAGTAGCATTCTTACACATTTTAAGTAGATGATCT 1073
Query 1088 GAAACTAGTGTCAACTGTGTACACGCCTGAGAAGTGaaaaaaaGATGTAATTTTTTAATA 1147
||||||||| | |||||||||||||| |||||||||||||||| | || | ||
Sbjct 1074 GAAACTAGTATGAACTGTGTACACGCATGAGAAGTGAAAAAAA-A---AAG-----A-TA 1123
Query 1148 AAGAAAGAGAATCAGTTCACGCTTTGTAAAATGTCCAGACTTTTATATGTGTAAACTTGT 1207
| |||||||||| ||||||||| |||||||||||||| |||||||||||||
Sbjct 1124 A----------TCAGTTCACGTTTTGTAAAAAGTCCAGACTTTTATCTGTGTAAACTTGT 1173
Query 1208 GCATTTTCA-AGAATCAAAACTTTTCTGCTTCTAGACTCCCATCAATTAGGGAAGACTAG 1266
||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1174 GCATTTT-ATAGAATCAAAACTTTTCTGCTTCTAGACTCCCATCAAT-AGGGAAGACTGG 1231
Query 1267 AATCTTC 1273
|||||||
Sbjct 1232 AATCTTC 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48034875420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5