BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16090.1
Length=1310
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471811 jgi|Araly1|471811|fgenesh2_kg.1__1765__AT1G16090.1 819 0.0
> Ahg471811 jgi|Araly1|471811|fgenesh2_kg.1__1765__AT1G16090.1
Length=1297
Score = 819 bits (443), Expect = 0.0
Identities = 595/665 (89%), Gaps = 23/665 (3%)
Strand=Plus/Plus
Query 131 CGATTCCTTATCCCTTTGGAATTGGTAAAGATTGCTATCTCAACAACAATGAGTGGTATG 190
||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 101 CGATTCCATATCCCTTTGGAATTGGTAAAGATTGCTATCTCGACAACAACGAGTGGTATG 160
Query 191 AAGTTATCTGTAACCGAACCTCAGGAAACCCTCTGCCAGTTCTTAAGAGTATCAACAGAG 250
||||||||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||
Sbjct 161 AAGTTATCTGTAACCGAACGTCAGGAAACCCTGTGCCAATTCTTAATAGTATCAACAGAG 220
Query 251 AACTGGTGAATATCTCTCTCCCGGACGACTCAAGCGATGTC-TTTGGGCTAACCCGAATC 309
||||||||||||||||||| |||||||||||||||||| || |||||||||| |||||||
Sbjct 221 AACTGGTGAATATCTCTCTGCCGGACGACTCAAGCGAT-TCCTTTGGGCTAATCCGAATC 279
Query 310 AAGAATCCGGTAACTTCTT-TAGGCTGTTCCAATATGGAAGAAATCAGCTTGGCTTTGAA 368
||||||||||||||||| | | ||||||||||||||||||||| ||||||||| ||||||
Sbjct 280 AAGAATCCGGTAACTTCATCT-GGCTGTTCCAATATGGAAGAACTCAGCTTGGTTTTGAA 338
Query 369 TGTGACCGGGAGCCCATTCTTCCTCACCGGCCGTAATACTTTAGTAGCAGTTGGCTGTAA 428
||||||| | |||||||||||||||||||||| ||||||| ||||||||||||| |||||
Sbjct 339 TGTGACCAGAAGCCCATTCTTCCTCACCGGCCATAATACTCTAGTAGCAGTTGGTTGTAA 398
Query 429 CAACAATGCCTCGATGACTGATGATAAGCTGCAGATTGGAGGATGCGAGTCTACCTGCGA 488
|||||| ||||||||||| |||| ||||| |||||| |||||||||||||||||||||||
Sbjct 399 CAACAAGGCCTCGATGACGGATGTTAAGCAGCAGATAGGAGGATGCGAGTCTACCTGCGA 458
Query 489 CGTGGGGTTTGGTCAGAGAGGACGGAACAGAAGCTGCAACGGCTATAGATGTTGCCAAGC 548
| | |||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||
Sbjct 459 CCTTTGGTTTGGTCAGAGAGGGCAGAACACAAGCTGCAACGGCTACAGATGTTGCCAAGC 518
Query 549 GAAGATACTCTCTGACCG-TC--TGC-AACAGATTGGCATCAAGATAGAGAGTCTTGATG 604
|||||||| |||||||| | || |||| | | |||| | | || | | ||||
Sbjct 519 GAAGATACCCTCTGACCCCTTGATGGTAACACAACGAAATCA-GCTGGAT-G-CA-GATG 574
Query 605 ACGAGGCATATTCTCCTTTAAATATAACCGAACCAGCTTTGTTTTACGATAAGGGATATG 664
| | | |||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 575 A-G-G-CATATTCTCCTTTAAATATAACCGAACCAGAGTTGTTTTACGATAAGGGATATG 631
Query 665 GAACGGTGGAGTTAGGTTGGTTCATAGATAGGTTACACAATATGTCCGTTG-TACTGGGG 723
||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 632 CAACAGTGGAGTTAGGTTGGTTCATAGATAGGTTACACAATATGTCCGTTGATACTGGGG 691
Query 724 TTTGCTATTCAATTACCGAGGGTACA-AGCGGTTGGAGTTACAAGCGAAGCTATAGAAGC 782
|||||||||||||||||||||||||| | |||||||||||||| | || |||| |||||
Sbjct 692 TTTGCTATTCAATTACCGAGGGTACACA-CGGTTGGAGTTACA-GT-AA-CTAT-GAAGC 746
Query 783 T-GCA 786
| |||
Sbjct 747 TTGCA 751
Score = 704 bits (381), Expect = 0.0
Identities = 449/481 (93%), Gaps = 8/481 (2%)
Strand=Plus/Plus
Query 766 AGCGAAGCTATAGAAGCTGCAGGTGTAACAGTGGCTACAGAGGCAATCCATATCTCTCGA 825
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||
Sbjct 776 AGCGAAGCTATAGAAGCTGCAGGTGTAACAGTGGTTACAGAGGGAATCCATATCTCCCGA 835
Query 826 GTGGATGTACAG-----ATATTGATGAGTGTGAAGAAGCCAAAGCTGAAGGAAGCAACCA 880
|||||||||||| |||||||||||||||||||||||||||||||||| | |||||
Sbjct 836 GTGGATGTACAGTTTCTATATTGATGAGTGTGAAGAAGCCAAAGCTGAAGGGCGAAACCA 895
Query 881 TTGTGGGAAAGGGTATGATTGTGAGAATATCCCAGGAAACTTTAGGTGTAAATCCAACAA 940
|||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||
Sbjct 896 TTGTGGGAAAGGGTATGATTGTGAGAATATACCAGGAAACTTTAGTTGTCAATCCAACAA 955
Query 941 AAACAAAAGACTAGCCATCATTCTTGGTATTAGTCTAGGCTTTGGCTTGTTG---GTAGC 997
||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||
Sbjct 956 AAACAAAAGACTAGCCATCATTCTTGGTAGTAGTCTAGGCTTTGGCTTGTTGTTTTTTGC 1015
Query 998 CATTGGAGCATGGTGGTTGTATAAGTTTATCAGAAAGCAAAGGGAGATAAAGCGGAAGAA 1057
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CATTGGAGCATGGTTGTTGTATAAGTTTATCAGAAAGCAAAGGGAGATAAAGCGGAAGAA 1075
Query 1058 GTTCTCTAAGCTTAATGGAGGACTATTGATGCAACAACAATTGGTTTCTAACGAAGGCAA 1117
||||| |||| || ||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 1076 GTTCTATAAGAGTAGTGGAGGACTATTGCTGCAACAACAATTGGTTTCGAATGAAGGCAA 1135
Query 1118 CATTGAGAATACAAGAGTATTCAGCTCGAAAGAATTGGAGAGAGCCACAGAAAACAAGAG 1177
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1136 CATTGAGAATACAAGAGCATTCAGCTCGAAAGAATTGGAGAAAGCCACAGAAAACAAGAG 1195
Query 1178 TATTGCAACATAGAAGATCCTTGGAACGTTTGTACTGATTCTTCCTCCAACATCACCACC 1237
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1196 TATTGCAACATAGAAAATCCTTGGAACGTTTTTACTGATTCTTCCTCCAACATCACCACC 1255
Query 1238 A 1238
|
Sbjct 1256 A 1256
Score = 121 bits (65), Expect = 2e-26
Identities = 88/99 (89%), Gaps = 2/99 (2%)
Strand=Plus/Plus
Query 1 ATGAGCAGAGAGAAG-TTTTCCATATATAACTTGCTCTCTCTTCTGGTTCTGCTGATCCA 59
|||||||||||| || |||||||||| | | ||||||||||||||||||||||||||||
Sbjct 1 ATGAGCAGAGAG-AGCTTTTCCATATGTGCCCTGCTCTCTCTTCTGGTTCTGCTGATCCA 59
Query 60 TGGTTTGATTGCAGCATCTGCTCAAGATCTCACTGTCTT 98
| ||| |||||||||| || ||||||||||||| |||||
Sbjct 60 TTGTTCGATTGCAGCAACTACTCAAGATCTCACGGTCTT 98
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48987948345
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5