BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16110.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471812 jgi|Araly1|471812|fgenesh2_kg.1__1766__AT1G16110.1 2876 0.0
Ahg911421 jgi|Araly1|911421|Al_scaffold_0001_1675 1387 0.0
Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673 460 2e-128
> Ahg471812 jgi|Araly1|471812|fgenesh2_kg.1__1766__AT1G16110.1
Length=2149
Score = 2876 bits (1557), Expect = 0.0
Identities = 1907/2072 (92%), Gaps = 40/2072 (2%)
Strand=Plus/Plus
Query 153 GTCTCAATTCCGTTCCCGTTCGGAATCGGGAAGGATTGTTATCTCAATGGCTGGTATGAG 212
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 109 GTCTCAATTCCGTTCCCGTTCGGAATCGGCAAGGATTGTTATCTCAATGGCTGGTACAAG 168
Query 213 GTTATCTGCAACACTTCCACTTCCGGGTCGTCTGGCACAACGGTTCCGTTCCTCTCACGG 272
||| ||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 169 GTTGTCTGCAACACTACCACTTCTGGGTCGTCTGGCACAACTGTTCCGTTCCTCTCACGG 228
Query 273 ATCAATAGCGAAGTGGTGAACATCTCTCTTCCAGATGGTAAGAAACTATATGGAGTAGTT 332
|||||||| |||||||||||||||||||||||||||||||| |||| ||| ||||| |||
Sbjct 229 ATCAATAGTGAAGTGGTGAACATCTCTCTTCCAGATGGTAATAAACCATACGGAGTGGTT 288
Query 333 CACATCAAAGGTCCAGTGACATCGTTGGGTTGCTCTAGTAGTAGTAGTAGCAGTCAAGTA 392
|| |||||||||||| |||||||||||||||||||||||||||||| | |||||||||
Sbjct 289 CATATCAAAGGTCCACTGACATCGTTGGGTTGCTCTAGTAGTAGTACT---AGTCAAGTA 345
Query 393 TCCGAAATGTCATTGCCGAATTTGAACGTCACAGGCAGGGGAAGTCCATATTTCCTCACT 452
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 346 TCCGAAATGTCATTGCCGAATTTGAACGTCACAGGCAGGGGAAGCCCATATTTCCTCACC 405
Query 453 GATGAGAACTGCCTCGTGATGGTTGGTTGTGGTACAAAGGCTTTGATGAAGGATATAGAA 512
|||||||| |||||||| |||||||||| ||||||||||||||||||| |||||| |||
Sbjct 406 CATGAGAACCGCCTCGTGGTGGTTGGTTGCGGTACAAAGGCTTTGATGACGGATATTGAA 465
Query 513 TCAGAGATCTTGGGTTGTGAATCGAGCTGTGAAGATAGCAAGAGTAGTGAAGAAGTAACA 572
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||||
Sbjct 466 TCAGAGATCTTGGGTTGTGAATCGAGCTGCGAAGCTAGCAAGAGTAGTGAAGAGGTAACA 525
Query 573 AACTCGAAATGTGACGGTTACAAATGCTGCCAGGCGAGAATACCGTTGGAGCGTCCTCAG 632
||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 526 AACTCGATATGTGACGGCTACAAATGCTGCCAGGCGAGGATACCGTTGGAGCGTCCTCAG 585
Query 633 GTTATTGGTATCAATATAGAAAACACTAGTGCCACAAGAGGGAAAGAAGGGTGTAGTGTT 692
||||||||||||| |||||||||||| | || |||||||||| | ||||||| ||||||
Sbjct 586 GTTATTGGTATCAGTATAGAAAACACAAATGGCACAAGAGGG--A-AAGGGTGCAGTGTT 642
Query 693 GCGTTCTTGACTAACAAAAGGTATGCGCCGATGAATGTTACCGAGCCAGAACAATTCCAT 752
||||||||||||||||| |||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 643 GCGTTCTTGACTAACAAGAGGTATACGCCGATTAATGTTACCGAGCCACAACAATTCCAT 702
Query 753 GCTGGTGGCTACGCAGTGGTTGAGCTAGGTTGGTACTTTGATACATCGGATTCACGCTAT 812
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||| |||| |
Sbjct 703 GCTGGTGGCTACGCGGTGGTAGAGCTAGGTTGGTACTTTGATACTTCGGATTCTCGCTTT 762
Query 813 AGGAACCCCTTAGGTTGTAGAAACATGACGCGGTACAGTTCTTACAGCTCCTTTGATAAA 872
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 763 AGGAACCCCTTAGGTTGTAGAAACATGACCCGGTACAGTTCTTACAGCTCCTTTGATAGT 822
Query 873 TGTAGTTGTGAGTATGATTACTTTTCTGGGATGAGTTATAGGATTTGCTATTGCAACTAT 932
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 TGTAGCTGCGAGTATGATTACTTTTCTGGGATGAGTTATAGGATTTGCTATTGCAACTAT 882
Query 933 GGCTACACAGGGAACCCATACCTTCGACATGGCTGCATAGACATAGACGAATGTGAAGGA 992
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 883 GGCTACACAGGGAACCCATACCTTCGACATGGCTGCATAGACATAGACGAATGCGAAGGA 942
Query 993 CACCACAATTGTGGAGAAGGGACTTGTGTGAACATGCCTGGAACACATAGCTGCGAGCCC 1052
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 943 CACCACAATTGTGGAGAAGGGACTTGTGTGAACATGCCTGGATCACATAGCTGCGAGCCC 1002
Query 1053 AAGATAACGAAACCGGAAAAAGCCTCTGTGCTTCAAGGTGTTCTTATAAGTCTAGGAGTG 1112
||||||||||| |||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1003 AAGATAACGAAGCCGGAAAAAGCCTCTGTGCTTCAAGGCGTTCTTATAGGTCTAGGAGTG 1062
Query 1113 CTGCTTTTCGTCCTTGGAATCTTG-GGGTTGTACAAATTCATTAAGAAGCGAACGAGGAT 1171
||| ||||||| || ||||||||| |||| ||||||||||||||||||||||| ||||||
Sbjct 1063 CTGTTTTTCGTTCTCGGAATCTTGCGGGT-GTACAAATTCATTAAGAAGCGAAGGAGGAT 1121
Query 1172 CATCCGCAACAAAAACTTTTTCAAACGTAATGGTGGCTTGCTGTTGAAACAACAACTAAT 1231
|||||||| ||| ||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1122 CATCCGCAGCAAGAACTTCTTCAAACGTAATGGTGGCTTGCTGTTGAAACAAAAACTAAT 1181
Query 1232 TAC---AAAGAACGGAAATGTTGATATGTCAAGGATATTTAGCTCAAAAGAGTTGAAGAA 1288
||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1182 TACTTCAAAGCACGGAAAGGTTGAGATGTCAAGGATATTTAGCTCAAAAGAGTTGAAGAA 1241
Query 1289 AGCTACTGATAACTTCAGCATGAACAGGGTGCTTGGGCAAGGGGGTCAAGGAACTGTGTA 1348
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1242 AGCTACTGATAACTTCAGCATGAACAGGGTGCTTGGGCAAGGCGGTCAAGGAACAGTGTA 1301
Query 1349 CAAGGGAATGTTGGCGGAAGGGAGAATCGTTGCGGTTAAAAGATCGAAAGTTGTGGGTGA 1408
||||||||| ||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1302 TAAGGGAATGCTGGTGGATGGGAGAATAGTTGCGGTTAAAAGATCGAAAGTTGTGGGTGA 1361
Query 1409 AGGCAAGATGGAAGAGTTCATCAATGAAGTCGTACTTCTCTCACAAATTAACCATAGGAA 1468
|| |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||
Sbjct 1362 AGACAAGATGGAAGAGTTCATTAATGAAGTCGTACTTCTTTCACAGATTAACCATAGGAA 1421
Query 1469 CATTGTGAAACTCTTGGGATGTTGTCTAGAGACTGAAGTTCCTGTCTTGGTTTACGAATA 1528
||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1422 CATTGTGAAACTCATGGGATGTTGTCTAGAGACTGAAGTTCCAATCTTGGTTTACGAGTA 1481
Query 1529 TATTCCTAATGGAGATCTGTTCAAGCGTCTTCATGAAAAATCTGAATCCAATGATTACAC 1588
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1482 TATTCCCAATGGAGATCTGTTCAAGCGTCTTCATGAAAAATCCGAATCCAATGATTACAC 1541
Query 1589 GATGACTTGGGAAGTACGTCTTCGTATAGCTATAGAGATAGCGGGAGCTCTTTCATACAT 1648
||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1542 GATGACTTGGGAAGTGCGTCTTCGTATCGCCATAGAGATCGCGGGAGCTCTTTCATACAT 1601
Query 1649 GCACTCAGCTGCATCGATTCCAATATACCACAGAGATATCAAGACTACCAATATACTATT 1708
||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1602 GCACTCAGCTGCATCTTTTCCAATATACCATAGAGATATTAAGACTACCAATATACTATT 1661
Query 1709 AGATGAAAAATATAGAGCCAAAGTATCTGATTTCGGAACTTCAAGATCCATAACCATTGC 1768
||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1662 AGATGAAAAATATCGAGCCAGAGTATCTGATTTCGGGACTTCAAGATCCATAACCATTGA 1721
Query 1769 TCAAACTCATCTAACAACGTTAGTTGCAGGCACTTTTGGGTATATGGATCCGGAGTACTT 1828
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 1722 TCAAACTCATCTAACAACATTGGTTGCAGGCACTTTTGGGTACATGGATCCGGAGTACTT 1781
Query 1829 TTTATCAAGCCAATATACTGACAAGAGCGATGTTTACAGTTTCGGGGTGGTCTTGGTGGA 1888
|||||||||||||||||||||||||||||||||||||||||| || | | | | |
Sbjct 1782 TTTATCAAGCCAATATACTGACAAGAGCGATGTTTACAGTTTTGGAAT--T-T-G-TCCC 1836
Query 1889 GCTCATAACCGGAGAAAAACCACTGTCAAGGAAGAGGATTGGCAACTGATTTCCTTGAGG 1948
| || |||| | || | |||||||||||||||||||||||||||||||||
Sbjct 1837 GA--AT--CCGGTGTGAA------G--AAGGAAGAGGATTGGCAACTGATTTCCTTGAGG 1884
Query 1949 CCATGAAAGAGAACAGAGTGATTGACA-CAATTGAT-ATTCGGATCAAAGGAGAAAGCAA 2006
|||||||||| ||||||||| |||||| || ||||| || || || |||| |||||||||
Sbjct 1885 CCATGAAAGAAAACAGAGTGGTTGACATCA-TTGATGAT-CGAATTAAAGAAGAAAGCAA 1942
Query 2007 GCTGTGCCAAGTGATGGCAGTCGCAAAACTCGCTCGAAAGTGTCTTAGCAGGAAAGGGAG 2066
||||| |||||||||||||||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 1943 GCTGTACCAAGTGATGGCAGTCGCAAAACTTGCTCGAAAATGTCTTAGCCGAAAAGGGAG 2002
Query 2067 AAAGCGGCCAAACATGAGAGAGGTTTCATTTGAGCTGGAGAGGATCCGTTCTTCATCACC 2126
||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 2003 GAAGCGGCCAAACATGAGAGAGGTTTCATTAGAGCTGGAGAGGATC-GTTCTTCATCACC 2061
Query 2127 TGAAGATTTAGAGGTCCATGTTAGAAATGTTGATGCAGAGGAACAAATCATGGAAATCAA 2186
||| || | | ||||||||| ||||| ||||| ||||||||||| |||||| |||||
Sbjct 2062 TGA-GA----G-G-TCCATGTTAAAAATGATGATGGAGAGGAACAAACCATGGAGATCAA 2114
Query 2187 CAGAGAACGATTTTGAGGGTATGTACATGAGT 2218
||||||| |||||||||||| |||||||||||
Sbjct 2115 CAGAGAAAGATTTTGAGGGTGTGTACATGAGT 2146
Score = 124 bits (67), Expect = 2e-27
Identities = 94/106 (89%), Gaps = 5/106 (5%)
Strand=Plus/Plus
Query 9 ATGAAGAAGACTAAGACTTACCAA-GTCTTCTGTATTGCTGCACTCTCTGTCCTAACTCT 67
||||||||||| |||||||| ||| || | |||||| || ||||||||||||||||||
Sbjct 1 ATGAAGAAGACAAAGACTTA-CAACTTCCTATGTATTATTGAACTCTCTGTCCTAACTCT 59
Query 68 GCAGCTTATCAATGG-T--TCATCAGCAGCAACACCTCCACCTCCA 110
||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 60 GCAGCTTATCAATGGCTCATCATCAGCAGCAACACCTCCACCTCCA 105
> Ahg911421 jgi|Araly1|911421|Al_scaffold_0001_1675
Length=2049
Score = 1387 bits (751), Expect = 0.0
Identities = 1474/1812 (81%), Gaps = 93/1812 (5%)
Strand=Plus/Plus
Query 14 GAAGACTAAGACTTACCAAGTCTTCTGTATTGCTGCACTCTCTGTCCTAACTCTGCAGCT 73
||||||||| | ||||| || || ||||||| | | | |||||| |||||||||||||
Sbjct 3 GAAGACTAAAAATTACCGGGTTTTATGTATTG-T--AGTGTCTGTCTTAACTCTGCAGCT 59
Query 74 TATCAATGGTTCATCAGCAGCAACACCTCCACCTCCAAAT-AGTAATTCTTCAACTTCTT 132
|| ||||| ||||||||||||||||||||| | | | || ||||||||||||||||
Sbjct 60 CATGAATGGCTCATCAGCAGCAACACCTCCA--AAC-AGTAAG-AATTCTTCAACTTCTT 115
Query 133 GTAACAGAGCCTGTGGAGGAGTCTCAATTCCGTTCCCGTTCGGAATC---GGGAAGGATT 189
|||||||| ||||||||||| |||| || || ||||||||||||||| ||||||||||
Sbjct 116 GTAACAGAACCTGTGGAGGAATCTCGATCCCCTTCCCGTTCGGAATCGGTGGGAAGGATT 175
Query 190 GTTATCTCAATGGCTGGTATGAGGTTATCTGCAACACTTCCACTTCCGGGTCGTCTGGCA 249
|||||||||| || ||||| |||||| |||||||| | |||||||||||||||| ||||
Sbjct 176 GTTATCTCAACGGTTGGTACGAGGTTGTCTGCAACCCCACCACTTCCGGGTCGTCCGGCA 235
Query 250 CAACGGTTCCGTTCCTCTC-ACGGATCAATAGCGAAGTGGTGAACATCTCTCTTCCAGAT 308
|||| ||||| ||||| || | | ||||| || |||||||||||||| ||||||||||||
Sbjct 236 CAACTGTTCCATTCCTGTCGA-GAATCAACAGGGAAGTGGTGAACATATCTCTTCCAGAT 294
Query 309 GG-TAAGAAACTATATGGAGTAGTTCACATCAAAGGTCCAGTGACATCGTTGGGTTGCTC 367
|| || | || ||| |||||||||| |||||||||||| ||||||||||||||||| ||
Sbjct 295 GGTTATG-GACCATACGGAGTAGTTCTCATCAAAGGTCCTGTGACATCGTTGGGTTGTTC 353
Query 368 TAGTAGTAGTAGTAGCAGTCAAGTATCCGAAATGTCATTGCCGAATTTGAACGTCACAGG 427
||||| | || | ||||||||| || ||| ||| | ||| || |||||||||| ||
Sbjct 354 TAGTA--A-TACT---AGTCAAGTACCCCAAAAGTCGCTACCGGATCTGAACGTCACGGG 407
Query 428 CAGGGGAAGTCCATATTTCCTCACTGATGAGAACTGCCTCGT-GATGGTTGGTTGTGGTA 486
|| ||| |||||||||||| |||| || |||||| ||||| | | ||||||||| ||||
Sbjct 408 CAAGGGCAGTCCATATTTCATCACCGACGAGAACCGCCTCATCG-CGGTTGGTTGCGGTA 466
Query 487 CAAAGGCTTTGATGAAGGATATAGAATCAGAGATCTTGGGTTGTGAATCGAGCTGTGAAG 546
||||||| ||||||| |||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 467 CAAAGGCGTTGATGACGGATATTGAATCAGAGATCTTGGGTTGTGAATCGAGTTGCGAAG 526
Query 547 ATAGCAAGAGTAGTGAAGAAGTAACAAACTCGAAATGTGACGGTTACAAATGCTGCCAGG 606
|||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 527 ATAGCAAGAGTAGTCAAGAAGTAACAAACTCGTTATGTGACGGTTACAAATGTTGCCAGG 586
Query 607 CGAGAATACCGTTGGAGCGTCCTCAGGTTATT-GGTATCAATATAGAAAACACTAGTGCC 665
|||| |||||||||||||||||||| | | | ||| ||||| |||| | || |
Sbjct 587 CGAGGATACCGTTGGAGCGTCCTCAAGC-AGTAGGTGTCAATGTAGAG--CGCT----C- 638
Query 666 ACAAGAGGGAAAGAAGGGTGTA-GTGTTGCGTTCTTGACTAACAAAAGGTATGCGCCGAT 724
| |||| | ||||| || | | ||||| |||||| ||| ||| |||||| | | | |
Sbjct 639 AG--GAGG-A--GAAGGATGCAAG-GTTGCCTTCTTGTCTAGCAAGAGGTATTCACTG-T 691
Query 725 GAA-TGTTACCG-AGCCAGAACAATTCCATGCTGGTGGCTACGCAGTGGTTGAGCTAGGT 782
|| |||||| | | |||||||| ||||||||||||||||||| ||||| |||||||||
Sbjct 692 CAAATGTTACTGTA-CCAGAACAGTTCCATGCTGGTGGCTACGTGGTGGTAGAGCTAGGT 750
Query 783 TGGTACTTTGATACATCGGATTCACGCTATAGGAACCCCTTAGGTTGTAGAAACATGACG 842
|||||||||| ||| |||||||| |||| |||||||||||| ||||| | ||| |||||
Sbjct 751 TGGTACTTTGCTACTTCGGATTCTCGCTTTAGGAACCCCTTGGGTTGCATAAATATGAC- 809
Query 843 CGGTACAGT-TCTTACAGC-TCCTTTGATAAATGTAGTTGTGAGTATGATTACTTTTCTG 900
| | | | |||||| | ||| |||||| ||| ||| || |||| ||||||||| |
Sbjct 810 CTATTCCGGATCTTACT-CATCCGATGATAATTGTCTTTGCGACTATGGTTACTTTTCCG 868
Query 901 GGATGAGTTATAGGATTTGCTATTGCAAC-TATGGCTACACAGGGAACCCATACCTTCGA 959
||||||||||||| ||||||||| | | ||||| ||||||||| ||||| ||||||
Sbjct 869 AAATGAGTTATAGGAACTGCTATTGCTCCCT-TGGCTTCACAGGGAATCCATATCTTCGA 927
Query 960 CATGGCTGCATAGAC-ATAGACGAATGTGAAGGACACCACA-AT-TGTGGAGAAGGGACT 1016
|| ||||||||| || || || || || ||| ||| | || ||||||||||| |||
Sbjct 928 GGGGGTTGCATAGACGAT-GATGATTGCAAACGAC-CCA-ATATATGTGGAGAAGGCACT 984
Query 1017 TGTGTGAACATGCCTGGAA-C-ACATA-GCTG-CG-A-GCCCAAGATAA-CGAAACCGGA 1069
||||||||| ||| |||| | | | | ||| | | ||||||||||| | || ||||
Sbjct 985 TGTGTGAACGTGCGTGGAGGCTATAGATGCTATCCCAAGCCCAAGATAATC-AAGCCGGC 1043
Query 1070 AAAAGCC-TCTGTGCTTCAAGGTGTTCTTATAAGTCTA--GG-AGTGCTGCTT-TTCGTC 1124
||| || || ||||| ||||| |||||| || || | || | | || || || ||
Sbjct 1044 CAAATCCCTC-GTGCTACAAGGGGTTCTTTTAGGTTTGTTGGGACTATTG-TTCTTAGTT 1101
Query 1125 CTTGGAAT-CTTGGGGTTG-TACAAA-TTCATTAAGAAGCGAACGAGGATCATCCGCAAC 1181
|||| | |||||| ||| | || | || || || ||||||| |||||||||| | | |
Sbjct 1102 GTTGGTACGCTTGGG-TTGGT-CATAGTT-ATAAAAAAGCGAAGGAGGATCATCAGTAGC 1158
Query 1182 AAAAACTTTTTCAAACGTAATGGTGGCTTGCTGTTGAAACAACAACTAATTACAA-AGA- 1239
| || || |||||||||||||| |||||| |||| ||||||||||||| ||| | |||
Sbjct 1159 AGGAAGTTCTTCAAACGTAATGGAGGCTTGTTGTTAAAACAACAACTAACTACTACAGAC 1218
Query 1240 -ACGGAAATGTTGATATGTCAAGGATATTTAGCTCAAAAGAGTTGAAGAAAGCTACTGAT 1298
| || ||||| || ||||| |||||||||||||| |||||||||| ||||| || |||
Sbjct 1219 GATGGTAATGTAGACATGTCGAGGATATTTAGCTCGGAAGAGTTGAAAAAAGCCACAGAT 1278
Query 1299 AACTTCAGCATGAACAGGGTGCTTGGGCAAGGGGGTCAAGGAACTGTGTACAAGGGAATG 1358
||||| ||| |||| |||||||||||| |||| ||||||||||||| || ||||| |||
Sbjct 1279 AACTTTAGCGTGAAGAGGGTGCTTGGGAAAGGCAGTCAAGGAACTGTATATAAGGGGATG 1338
Query 1359 TTGGCGGAAGGGA-GAATCGTTGCGGTTAAAAGATCGAAAGTTGTGGGTGAAGGCAAGAT 1417
||| ||| || | || || |||||||||||| ||| |||||||| | ||||| ||| |
Sbjct 1339 ATGGTGGATGGAAAGA-TCATTGCGGTTAAAAAATCCAAAGTTGTCGATGAAGATAAGCT 1397
Query 1418 GGAAGA-GTTCATCAATGA-AGTCGTACTTCTCTCACAAATTAACCATAGGAACATTGTG 1475
||| | |||||||||||| | || | ||||| ||||| |||||||||||||| ||||||
Sbjct 1398 TGAA-ACGTTCATCAATGAGA-TCATCCTTCTTTCACAGATTAACCATAGGAATATTGTG 1455
Query 1476 AAACTCTTGGGATGTTGTCTAGAGACTGAAGTTCCTGTCTTGGTTTACGAATATATTCCT 1535
||||||||||||||||| || || || || ||||| ||||||||||||||||||||||
Sbjct 1456 AAACTCTTGGGATGTTGCCTGGAAACAGAGGTTCCAATCTTGGTTTACGAATATATTCCC 1515
Query 1536 AATGGAGATCTGTTCAAGCGTCTTCATGAAAAATCTGAATCC-AATGATTACACGATGAC 1594
||||||||| |||||||||| |||||||| | |||||| || ||||| ||||||
Sbjct 1516 AATGGAGATATGTTCAAGCGCCTTCATGA----T--GAATCCGAA-GATTATGTGATGAC 1568
Query 1595 TTGGGAAGTACGTCTTCGTATAGCTATAGAGATAGCGGGAGCTCTTTCATACATGCACTC 1654
||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 1569 TTGGGAAGTGCGTCTTCGCATAGCCATAGAGATCGCGGGAGCTCTTTCATACATGCACTC 1628
Query 1655 AGCTGCATCGATTCCAATATACCACAGAGATATCAAGACTACCAATATACTATTAGATGA 1714
|||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1629 AGCTGCATCGTTTCCAATATACCACAGAGATATCAAGACTACCAATATCCTATTGGATGA 1688
Query 1715 AAAATATAGAGCCAAAGTATCTGATTTCGGAACTTCAAGATCCATAACCATTGCTCAAAC 1774
|||||| |||| || || || |||||||||||||||||||| ||||||||| ||||||
Sbjct 1689 AAAATACGGAGCTAAGGTTTCGGATTTCGGAACTTCAAGATCGGTAACCATTGATCAAAC 1748
Query 1775 TCATCTAACAAC 1786
||| || |||||
Sbjct 1749 TCACCTGACAAC 1760
> Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673
Length=2043
Score = 460 bits (249), Expect = 2e-128
Identities = 480/585 (82%), Gaps = 41/585 (7%)
Strand=Plus/Plus
Query 1632 GGAGCTCTTTCATACATGCACTCAGCTGCATCGATTCCAATATACCACAGAGATATCAAG 1691
||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 1459 GGAGCTCTTACATACATGCACTCAGCTGCATCTTTTCCAATATTCCACAGAGATATCAAG 1518
Query 1692 ACTACCAATATACTATTAGATGAAAAATATAGAGCCAAAG-TATCTGATTTCGGAACTTC 1750
||||||||||||||||| ||||| ||||| |||| |||| | |||||||||||||||||
Sbjct 1519 ACTACCAATATACTATTGGATGAGAAATACCGAGC-AAAGATGTCTGATTTCGGAACTTC 1577
Query 1751 AAGATCCATAACCATTGCTCAAACTCATCTA-ACAACGTTAGTTGCAGGCACTTTTGGGT 1809
|||||| |||||| || ||||||||| || ||||| |||||||| || ||||||||||
Sbjct 1578 AAGATCGGTAACCACTGATCAAACTCA-CTTGACAACATTAGTTGCGGGAACTTTTGGGT 1636
Query 1810 ATATGGATCCGGAGTACTTTTTATCAAGCCAATATACTGACAAGAGCGATGTTTACAGTT 1869
| |||||||| |||||||| | || ||||| || ||| |||| |||||||| || ||||
Sbjct 1637 ACATGGATCCAGAGTACTTCCTGTCGAGCCAGTACACTCACAAAAGCGATGTATATAGTT 1696
Query 1870 TCGGGGTGGTCTTGGTGGAGCTCATAACCGGAGAAAAACCA----C---TGTCAAG---G 1919
||||||| || ||||||||||||||||| |||||||||||| | |||| | |
Sbjct 1697 TCGGGGTTGTGTTGGTGGAGCTCATAACAGGAGAAAAACCAATGTCCCGTGTCCGGTCTG 1756
Query 1920 AAGA-GG-AT---T--GGCAACTGATTTCCTTGAGGCCATGAAAGAGAACAGAG-TGATT 1971
|||| || || | ||||||| ||||||| || || |||||||||||||||| || ||
Sbjct 1757 AAGAAGGCATAGGTTTGGCAACTTATTTCCTCGAAGCAATGAAAGAGAACAGAGCTG-TT 1815
Query 1972 GACACAATTGATATTCGGATCAAAGGA-GAAAGCAAGCTGTGCCAAGTGATGGCAGTCGC 2030
|||| ||||||||||||||||| ||| |||||||||| |||| ||||| || ||
Sbjct 1816 GACATAATTGATATTCGGATCAG-GGAAGAAAGCAAGC------AAGTAATGGCGGTAGC 1868
Query 2031 AAAACTCGCTCGAAAGTGTCTTAG-CAGGAAAGGGAGA-AAGCGGCCAAACATGAGAGAG 2088
||||||||| ||||| ||||||| | | ||||||| | |||||||||||||||||||||
Sbjct 1869 AAAACTCGCCCGAAAATGTCTTAATC-GAAAAGGGA-ATAAGCGGCCAAACATGAGAGAG 1926
Query 2089 GTTTCATTTGAGCTGGAGAGGATCCGTTCTTCATCACCTGAAGATTTAGAGGTCCAT--G 2146
||||| | ||||| |||||||||||||| ||| | || |||||||||| |||||| |
Sbjct 1927 ATTTCAATGGAGCTAGAGAGGATCCGTTCATCA-C-CCA-AAGATTTAGATGTCCATCCG 1983
Query 2147 TTAGAA-ATGTTGATGCAGAGGAACAAATCATGGAAATCAACAGA 2190
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Sbjct 1984 GAAGAAGAAGAAGAAGAAGAGGATCAACTTATGGAAATCAACAGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88826451340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5