BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16150.1
Length=2340
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471814 jgi|Araly1|471814|fgenesh2_kg.1__1768__AT1G16150.1 1757 0.0
Ahg911421 jgi|Araly1|911421|Al_scaffold_0001_1675 401 1e-110
Ahg909607 jgi|Araly1|909607|Al_scaffold_0002_2688 394 2e-108
Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673 377 2e-103
> Ahg471814 jgi|Araly1|471814|fgenesh2_kg.1__1768__AT1G16150.1
Length=2322
Score = 1757 bits (951), Expect = 0.0
Identities = 1076/1133 (95%), Gaps = 21/1133 (2%)
Strand=Plus/Plus
Query 1209 GTTCTTCAGGCGTAATGGAGGGATGCTGTTAAAACAACAGTTAGCTAGAAAAGAAGGCAA 1268
||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1206 GTTCTTCAGGCGTAATGGAGGTATGTTGTTAAAACAACAGTTAGCTAGAAAAGAAGGCAA 1265
Query 1269 TGTAGAGATGTCAAAGATATTTAGCTCGAACGAGTTGGAGAAAGCTACTGATAACTTTAA 1328
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1266 TGTAGAGATGTCAAAGATATTTAGCTCAAATGAGTTGGAGAAAGCTACTGATAACTTTAA 1325
Query 1329 CACGAATAGGGTTCTTGGGCAAGGAGGTCAAGGTACTGTTTACAAAGGTATGCTCGTTGA 1388
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1326 CAAGAATAGGGTTCTTGGGCAAGGAGGTCAAGGTACTGTTTACAAAGGTATGCTCGTTGA 1385
Query 1389 TGGTAGAATCGTCGCAGTGAAAAGGTCGAAAGCCATGGATGAAGACAAGGTAGAAGAGTT 1448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1386 TGGTAGAATCGTCGCAGTGAAAAGGTCGAAAGCCATGGATGAAGACAAGGTAGAAGAGTT 1445
Query 1449 TATCAATGAAGTTGTTGTTCTAGCGCAGATCAACCATAGAAACATTGTTAAACTCTTGGG 1508
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1446 TATCAATGAAGTTGTTGTTCTCGCGCAGATCAACCACAGAAACATTGTTAAACTCTTGGG 1505
Query 1509 ATGTTGCCTTGAGACGGAAGTTCCAGTCCTGGTTTATGAGTTTGTTCCGAACGGTGACTT 1568
|||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |||||
Sbjct 1506 ATGTTGTCTTGAGACGGAAGTTCCAGTCCTAGTTTATGAGTTTGTCCCGAACGGAGACTT 1565
Query 1569 ATGCAAGCGTCTTCGAGATGAATGTGATGATTACATCA-TGACATGGGAAGTGCGCCTTC 1627
||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||
Sbjct 1566 ATGCAAGCGTCTTCGAGATGAATCTGATGATTACA-CAATGACATGGGAAGTGCGCCTTC 1624
Query 1628 ACATTGCAATAGAGATTGCAGGAGCACTTTCGTACCTACACTCGGCTGCATCTTTTCCTA 1687
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1625 ACATTGCAATAGAGATCGCAGGAGCACTTTCGTACCTACACTCAGCTGCATCTTTTCCAA 1684
Query 1688 TATACCACAGAGATATCAAGACTACCAACATACTACTGGATGAGAAATATCAGGTTAAGG 1747
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1685 TATATCACAGAGATATCAAGACTACCAACATACTACTGGATGAGAAATATCAGGCTAAGG 1744
Query 1748 TGTCTGATTTCGGAACTTCAAGATCGGTGACCATAGATCAAACTCACTTGACAACTCAAG 1807
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1745 TTTCTGATTTCGGAACTTCAAGATCGGTGACCATAGATCAAACTCACTTGACAACTCAAG 1804
Query 1808 TTGCAGGTACTTTTGGGTACGTGGATCCAGAGTACTTTCAATCAAGTAAGTTTACGGATA 1867
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1805 TTGCAGGTACTTTCGGGTACGTGGATCCAGAGTACTTTCAATCAAGCAAGTTTACGGATA 1864
Query 1868 AAAGTGATGTGTACAGTTTTGGAGTTGTCCTCGTGGAGCTCATTACCGGAAA-AAACCCG 1926
|||||||||| |||||||||||||||||||| |||||||||||||||||| | |||||
Sbjct 1865 AAAGTGATGTATACAGTTTTGGAGTTGTCCTTGTGGAGCTCATTACCGGAGACAAACCA- 1923
Query 1927 TCCTCCCGTGTCCAGTCTGAAGAAAACAGGGGATTTGCAGCTCATTTTGTTGCAGCCGTG 1986
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1924 TCCTCCCGTGTCCGGTCTGAAGAAAACAGGGGTTTTGCAGCTCATTTTGTTGCAGCCGTG 1983
Query 1987 AAAGAGAACAGATTTCTTGACATAGTTGATGAACGGATCAAAGATGAATGCAACCTGGAC 2046
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1984 AAAGAGAATAGAGTTCTTGACATAGTTGATGAACGGATCAAAGACGAATGCAACCTGGAC 2043
Query 2047 CAAGTGATGGCAGTGGCAAAACTCGCTAAAAGATGTTTAAACCGAAAAGGGAAGAAGAGG 2106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2044 CAAGTGATGGCAGTGGCAAAACTCGCTAAAAGATGTTTAAACCGAAAAGGGAAGAAGAGG 2103
Query 2107 CCAAACATGAGAGAAGTTTCAGTTGAGCTGGAGAGGATTCGTTCATCATCTTATAAGTCA 2166
||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||
Sbjct 2104 CCAAACATGAGAGAAGTTTCAATTGAGCTGGAGAGGATTCGTTCATCACCTTATAATTCA 2163
Query 2167 GAGATTCATAatgatgatgatgatgatgatgatgatgatgatgaggatgatCAAGCCATG 2226
||||||||||||||||||||||||||||| | || | ||| |||||||||
Sbjct 2164 GAGATTCATAATGATGATGATGATGATGA-G--GA--A-GAT---------CAAGCCATG 2208
Query 2227 GAACTCAACATTGAAGAGACTTGGGATGTTGGTATGACTGCTCCAGCCTCTATGTTTAAT 2286
||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2209 GAAATCAACATTGACGAGACTTGGGATGTTGGTATGACTGCACCAGCCTCTATGTTTAAT 2268
Query 2287 AACGGATCCCCTGCGT-CTGATGTTGAGCCTCTGGTTCCTCTACGAACATGGT 2338
||| |||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 2269 AACCGATCCCCTGC-TACTGATGTTGAGCCTCTGGTTCCTCTACGAACATGGT 2320
Score = 1591 bits (861), Expect = 0.0
Identities = 1037/1121 (93%), Gaps = 16/1121 (1%)
Strand=Plus/Plus
Query 1 ATGAAGAAAGAAACTCAAAACCTCCAATGTATCCCACTAGTGATCTCTGTCTTATCTCTG 60
||||||| ||| ||||||||| ||| ||||| ||||| ||||||| |||| ||||||||
Sbjct 1 ATGAAGACAGAGACTCAAAACATCCTTTGTATTCCACTGGTGATCTTTGTCCTATCTCTG 60
Query 61 --T-T---TGGCGTCTCATCAGCAAGAAAACCTCCATATCTGTGTAACAGAGTCTGCGGA 114
| | |||||| ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 TTTATCAATGGCGTATCATCAGCAAGAAAACCTCCAGATCTGTGTAACAGAGTCTGCGGA 120
Query 115 GGAATATCAATTCCTTTCCCTTTCGGTATCGGTGGAAAAGAATGCTATCTAAACCCGTGG 174
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAATATCTATTCCTTTCCCGTTCGGTATCGGTGGAAAAGAATGCTATCTAAACCCGTGG 180
Query 175 TACGAGGTTGTATGTAACACCACAACCTCTGTTCCGTTCCTCTCGAGGATCAACAGAGAA 234
||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||
Sbjct 181 TACGAGGTTGTATGTAACAGCACAACCTCTGTTCCATTCCTCTCAAGGATCAACAGAGAA 240
Query 235 TTGGTGAACATCTATCTTCCAGATCCTACTGAGTACTACTCTAACGGAGTTGTTCACATC 294
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TTGGTGAACATCTCTCTTCCAGATTCTACTGAGTACTACTCTAACGGAGTTGTTCACATC 300
Query 295 AAAGGTCCCGTAACTTCCTCAGGGTGTTCTACCGGAACATCTCAACCACTTACACCGCAG 354
||||||||||||||||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct 301 AAAGGTCCCGTAACTTCCTCAGGGTGTTCTACCGGAAGATCTCAGCCGCTTACACCGCAG 360
Query 355 CCTTTAAACGTTGCAGGCCAAGGCAGTCCCTATTTCCTCACGGACAAGAACCTCCTCATG 414
|||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 361 CCTTTAAACGTTGCCGGCCTAGGCAGCCCCTATTTCCTCACGGACAAGAACCTCCTCATG 420
Query 415 GCCGTTGGTTGCAACGTCAAGGCCGTTATGAT-GGATGTCAAATCGCAGATCATCGGTTG 473
|| ||||||||||||||||| ||||||||| | |||| |||||||||||||||| |||||
Sbjct 421 GCGGTTGGTTGCAACGTCAAAGCCGTTATG-TCGGATATCAAATCGCAGATCATAGGTTG 479
Query 474 CGAGTCAAGTTGCGACGAGAGAAACAGTAGCAGCCAAGTTGTAAGAAACAAAATCTGCAG 533
||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 480 TGAGTCAAGTTGTGACGAGAAAAACAGTAGCAGCCAACCAGTAAGAAACAAAATCTGCAG 539
Query 534 TGGTAATAAATGTTGCCAGACGAGGATACCGGAAGGGCAGCCGCAAGTAATTGGAGTCAA 593
||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 540 TGGTAGTAAATGCTGCCAGACGAGGATACCGGAAGGGCAGCCTCAAGTAATTGGAGTCAA 599
Query 594 CATAGAGATCCCTGAAAACAAAAACACAACAGAAGGAGGATGCAAAGTTGCATTTTTGAC 653
|||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 600 TGTAGAGACCCCTGAAGGCAAAAACACAACAGAAGGAGGATGCAGAGTTGCATTTTTGAC 659
Query 654 GAGCAACAAATATTCGAGTTTGAATGTTACAGAGCCAGAAGAGTTTCATAGTGATGGATA 713
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GAGCAAGAAGTATTCGAGTTTGAATGTTACAGAGCCAGAAGAGTTTCATAGTGATGGATA 719
Query 714 CGCGGTGGTTGAGCTTGGATGGTACTTTGATACTTCGGATTCTCGTGTTTTAAGCCCCAT 773
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 720 CGCGGTGGTCGAGCTTGGATGGTACTTTGATACTTCGGATCCTCGTGTTTTAAGCCCCAT 779
Query 774 AGGTTGTATGAATGTGTCAGATGCATCACAAGATGGCGGGTATGGTTCCGAGACGATTTG 833
|||||||| |||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 780 AGGTTGTAAAAATGTGTCAGATGCATCACAAGATGGCGGGTACGGTTCCGAAACAATGTG 839
Query 834 CGTTTGCTCGTACGGCTACTTCTCTGGATTCAGCTATAGGAGTTGCTATTGTAACTCCAT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 CGTTTGCTCGTACGGCTACTTCTCTGGATTCAGCTATAGGAGTTGCTATTGTAACTCCAT 899
Query 894 GGGTTACGCAGGGAATCCATTCCTTCCAGGTGGATGTGTAGACATAGATGAATGTAAACT 953
|||||| || ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 900 GGGTTATGCTGGGAATCCATTCCTTCCAGGTGGATGTGTTGACATCGATGAATGTAAACT 959
Query 954 AGAA-ATAGGACGCAAAAGGTGCAAAGACCAAAGTTGTGTGAATAAGCCCGGTTGGTTTA 1012
|||| | ||||||| ||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 960 AGAAGA-AGGACGCCAAAGGTGTAAAGACCAAAGTTGTGTGAATAAACCCGGTTGGTTTA 1018
Query 1013 CGTGTGAGCCAAAGAAACCAGGGCAGATCAAGCCAGTGTTCCAAGGTAAAAGTCAATTTG 1072
|||||||||||||||||||||||||| |||| |||||||| ||||||||||||||| |
Sbjct 1019 CGTGTGAGCCAAAGAAACCAGGGCAGCTCAAACCAGTGTTTCAAGGTAAAAGTCAAA--G 1076
Query 1073 ATTTTATCTTGAATGTTGTGTTGAAGATATTATTGTTTTGT 1113
| | ||||| ||||||||||||||||||||| |||||
Sbjct 1077 AA---A-CTTGAGCGTTGTGTTGAAGATATTATTGATTTGT 1113
Score = 104 bits (56), Expect = 3e-21
Identities = 63/66 (95%), Gaps = 1/66 (2%)
Strand=Plus/Plus
Query 1112 GTGTTCTTATAGGTTCGGCACTGTTGCTTTTCGCCTTTGGAATTTTCGGGTTGTACAAGT 1171
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1149 GTGTTCTTATAGGTTCGGCACTGTTGCTTTTCGCCTTTGGAATTTTTGGGTTGTACA-GT 1207
Query 1172 TCATCA 1177
|| |||
Sbjct 1208 TCTTCA 1213
> Ahg911421 jgi|Araly1|911421|Al_scaffold_0001_1675
Length=2049
Score = 401 bits (217), Expect = 1e-110
Identities = 480/606 (79%), Gaps = 21/606 (3%)
Strand=Plus/Plus
Query 1209 GTTCTTCAGGCGTAATGGAGGGATGCTGTTAAAACAACAGTTAGCTA-GA-A-AAGAAGG 1265
|||||||| ||||||||||| || ||||||||||||| || ||| | | | || ||
Sbjct 1164 GTTCTTCAAACGTAATGGAGGCTTGTTGTTAAAACAACAACTAACTACTACAGACGATGG 1223
Query 1266 CAATGTAGAGATGTCAAAGATATTTAGCTC-GAACGAGTTGGAGAAAGCTACTGATAACT 1324
|||||||| ||||| | |||||||||||| ||| |||||| | ||||| || |||||||
Sbjct 1224 TAATGTAGACATGTCGAGGATATTTAGCTCGGAA-GAGTTGAAAAAAGCCACAGATAACT 1282
Query 1325 TTAACACGAATAGGGTTCTTGGGCAAGG-AGGTCAAGGTACTGTTTACAAAGGTATGCTC 1383
||| | ||| ||||| |||||| |||| | ||||||| ||||| || || || ||| |
Sbjct 1283 TTAGCGTGAAGAGGGTGCTTGGGAAAGGCA-GTCAAGGAACTGTATATAAGGGGATGATG 1341
Query 1384 GTTGATGGTAGA-ATCGTCGCAGTGAAAAGGTCGAAAGCCATGGATGAAGACAAGGTAGA 1442
|| ||||| | | ||| | || || |||| || |||| | |||||||| ||| | ||
Sbjct 1342 GTGGATGG-AAAGATCATTGCGGTTAAAAAATCCAAAGTTGTCGATGAAGATAAGCTTGA 1400
Query 1443 AGA-GTTTATCAATGAAG-TTGTTGTTCTAGCGCAGATCAACCATAGAAACATTGTTAAA 1500
| | ||| ||||||| || | | |||| | ||||| |||||||| || ||||| |||
Sbjct 1401 A-ACGTTCATCAATG-AGATCATCCTTCTTTCACAGATTAACCATAGGAATATTGTGAAA 1458
Query 1501 CTCTTGGGATGTTGCCTTGAGACGGAAGTTCCAGTCCTGGTTTATGAGTTTGTTCCGAAC 1560
||||||||||||||||| || || || |||||| || ||||||| || | | |||| ||
Sbjct 1459 CTCTTGGGATGTTGCCTGGAAACAGAGGTTCCAATCTTGGTTTACGAATATATTCCCAAT 1518
Query 1561 GGTGACTTATG--CAAGCGTCTTCGA-GATGAATGTGATGATTACATCATGACATGGGAA 1617
|| || |||| |||||| |||| | ||||||| || ||||| | ||||| ||||||
Sbjct 1519 GGAGA--TATGTTCAAGCGCCTTC-ATGATGAATCCGAAGATTATGTGATGACTTGGGAA 1575
Query 1618 GTGCGCCTTCACATTGCAATAGAGATTGCAGGAGCACTTTCGTACCTACACTCGGCTGCA 1677
||||| |||| ||| || |||||||| || ||||| ||||| ||| | ||||| ||||||
Sbjct 1576 GTGCGTCTTCGCATAGCCATAGAGATCGCGGGAGCTCTTTCATACATGCACTCAGCTGCA 1635
Query 1678 TCTTTTCCTATATACCACAGAGATATCAAGACTACCAACATACTACTGGATGAGAAATAT 1737
|| ||||| ||||||||||||||||||||||||||||| || ||| ||||||| |||||
Sbjct 1636 TCGTTTCCAATATACCACAGAGATATCAAGACTACCAATATCCTATTGGATGAAAAATA- 1694
Query 1738 CAG-GTTAAGGTGTCTGATTTCGGAACTTCAAGATCGGTGACCATAGATCAAACTCACTT 1796
| | | |||||| || ||||||||||||||||||||||| ||||| |||||||||||| |
Sbjct 1695 CGGAGCTAAGGTTTCGGATTTCGGAACTTCAAGATCGGTAACCATTGATCAAACTCACCT 1754
Query 1797 GACAAC 1802
||||||
Sbjct 1755 GACAAC 1760
> Ahg909607 jgi|Araly1|909607|Al_scaffold_0002_2688
Length=1860
Score = 394 bits (213), Expect = 2e-108
Identities = 565/733 (77%), Gaps = 32/733 (4%)
Strand=Plus/Plus
Query 1210 TTCTTCAGGCGTAATGGAGGGATGCTGTTAAAACAACAGTTAGCTAGAAAAGAAGGCAAT 1269
||||||| ||||| ||||| | ||||| ||||||||||| || || |||||||
Sbjct 736 TTCTTCAAACGTAACGGAGGTCTATTGTTACAACAACAGTTAACTTCAACGGAAGGCACC 795
Query 1270 GTAGAGATGTC-AAAGATATTTAGCTCGAACGAGTTGGAGAAAGCTACTGATAACTTTA- 1327
|| |||| | | |||| ||||||| |||| |||||||||||||||||||| ||||| |
Sbjct 796 GTCGAGAAGACAAAAG-TATTTAGTTCGAGGGAGTTGGAGAAAGCTACTGAAAACTTCAG 854
Query 1328 ACACGAATAGGGTTCTTGGGCAAGGAGGTCAAGGTACTGTTTACAAAGGTATGCTCGTTG 1387
| || || |||||||| ||||| |||||||| ||||| ||||| || ||| | || |
Sbjct 855 TGA-AAACAGAGTTCTTGGACAAGGTGGTCAAGGCACTGTGTACAAGGGAATGTTGGTCG 913
Query 1388 ATGGTAGAATCGTCGCAGTGAAAAGGTCGAAAGCCATGGATGAAGACAAGGTAGAAGAGT 1447
||||||| || || ||||| |||| || ||| | |||| ||||||||| ||||||| |
Sbjct 914 ATGGTAGCATTGTGGCAGTCAAAAAATCTAAAATCGTGGACGAAGACAAGTTAGAAGAAT 973
Query 1448 TTATCAATGAAGTTGTTGTTCTAGCGCAGATCAACCATAGAAACATTGTTAAACTCTTGG 1507
| || ||||| || || ||||| |||| || ||||| || ||||| || ||||||||||
Sbjct 974 TCATAAATGAGGTCGTCATTCTATCGCATATTAACCACAGGAACATCGTGAAACTCTTGG 1033
Query 1508 GATGTTGCCTTGAGACGGAAGTTCCAGTCCTGGTTTATGAGTTTGTT-CCGAACGGTGA- 1565
|||||||||||||||||||||| || | ||||| || |||||| || || || || |
Sbjct 1034 GATGTTGCCTTGAGACGGAAGTCCCTCTTCTGGTCTACGAGTTTATTTCC-AATGGAAAT 1092
Query 1566 CTTATGCAAGCGTCTTCGA-GATGAATG-TGATGATTACATC-ATGAC-A-T-GGGAAGT 1619
||| | | ||| ||| | | || |||| | |||||||| | ||| | | | |||||||
Sbjct 1093 CTTTT-CGAGCATCTCC-ATGACGAATCATC-TGATTACA-CGATGGCCACTTGGGAAGT 1148
Query 1620 GCGCCTTC-ACATTGCAATAGAGATTGCAGGAGCACTTTCGTACCTACACTCGGCTGCAT 1678
||| || | | || || ||||||||||| ||||| ||||| ||||||||||| || ||||
Sbjct 1149 GCGTCTGCGA-ATGGCTATAGAGATTGCCGGAGCTCTTTCATACCTACACTCAGCCGCAT 1207
Query 1679 CTTTTCCTATATACCACAGAGATATCAAGA-CTACCAACATACTACTGGATGAGAAATAT 1737
| ||| || || |||||||| ||||| | |||| |||||| | |||| |||||||||
Sbjct 1208 CGGCTCCCATTTATCACAGAGACATCAA-ATCTACAAACATAATGTTGGACGAGAAATAT 1266
Query 1738 C-AGGTTAAGGTGTCTGATTTCGGAACTTCAAGATCGGTGACCATAG-ATCAAACTCA-C 1794
| || | |||||||| ||||| || ||||||||| |||| || | || |||| || || |
Sbjct 1267 CGAGCT-AAGGTGTCCGATTTTGGTACTTCAAGAACGGTAAC-AGAGGATCATACCCATC 1324
Query 1795 TTGACAACTCAAGTTGCAGGTACTTTTGGGTACGTGGATCCAGAGTACTTTCAA-TCAAG 1853
| |||||| | ||| |||||||| || || |||||||||| || |||| | |||||
Sbjct 1325 T-GACAACACTGGTTTCAGGTACTGCAGGATATTTGGATCCAGAATA-TTTCCAGTCAAG 1382
Query 1854 T-AAGTTTACGGATAAAAGTGATGTGTACAGTTTTGGAGTTGTCCTCGTGGAGCTCATTA 1912
|| || || ||||| ||||||||||| || || |||||||| | ||||| ||||| |
Sbjct 1383 CCAA-TTCACTGATAAGAGTGATGTGTATAGCTTCGGAGTTGTGTTGGTGGAACTCATCA 1441
Query 1913 CCGGA-AAAAACC 1924
| ||| |||||||
Sbjct 1442 CAGGAGAAAAACC 1454
> Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673
Length=2043
Score = 377 bits (204), Expect = 2e-103
Identities = 418/519 (81%), Gaps = 24/519 (5%)
Strand=Plus/Plus
Query 1645 GCAGGAGCACTTTCGTACCTACACTCGGCTGCATCTTTTCCTATATACCACAGAGATATC 1704
|||||||| ||| | ||| | ||||| |||||||||||||| |||| |||||||||||||
Sbjct 1456 GCAGGAGCTCTTACATACATGCACTCAGCTGCATCTTTTCCAATATTCCACAGAGATATC 1515
Query 1705 AAGACTACCAACATACTACTGGATGAGAAATATCAG-GTTAAGGTGTCTGATTTCGGAAC 1763
||||||||||| |||||| ||||||||||||| | | | ||| ||||||||||||||||
Sbjct 1516 AAGACTACCAATATACTATTGGATGAGAAATA-CCGAGCAAAGATGTCTGATTTCGGAAC 1574
Query 1764 TTCAAGATCGGTGACCA-TAGATCAAACTCACTTGACAAC-TCAAGTTGCAGGTACTTTT 1821
|||||||||||| |||| | |||||||||||||||||||| | | ||||| || ||||||
Sbjct 1575 TTCAAGATCGGTAACCACT-GATCAAACTCACTTGACAACATTA-GTTGCGGGAACTTTT 1632
Query 1822 GGGTACGTGGATCCAGAGTACTTTCAATCAAGTAAGTTTACGGATAAAAGTGATGTGTAC 1881
|||||| |||||||||||||||| | || || ||| || | ||||| ||||| ||
Sbjct 1633 GGGTACATGGATCCAGAGTACTTCCTGTCGAGCCAGTACACTCACAAAAGCGATGTATAT 1692
Query 1882 AGTTTTGGAGTTGTCCTCGTGGAGCTCATTACCGGA-AAAAACCCGTCCTCCCGTGTCCA 1940
||||| || ||||| | ||||||||||| || ||| ||||||| | ||||||||||
Sbjct 1693 AGTTTCGGGGTTGTGTTGGTGGAGCTCATAACAGGAGAAAAACCAATG-TCCCGTGTCCG 1751
Query 1941 GTCTGAAGAAAACAGGGGATTTG-CAGCTCATTTTGTTGCAGCCGTGAAAGAGAACAGAT 1999
|||||||||| || || |||| || || |||| | | ||| ||||||||||||||
Sbjct 1752 GTCTGAAGAAGGCATAGG-TTTGGCAACTTATTTCCTCGAAGCAATGAAAGAGAACAGAG 1810
Query 2000 TTCTTGACATAGTTGATGAA-CGGATCAAAGATGAATGCAACCTGGACCAAGTGATGGCA 2058
| |||||||| ||||| | ||||||| || ||| |||| | | |||| |||||
Sbjct 1811 CTGTTGACATAATTGAT-ATTCGGATCAGGGAAGAAAGCAA---G--C-AAGTAATGGCG 1863
Query 2059 GTGGCAAAACTCGCTA-AAAGATGT-TTAAACCGAAAAGGGAAGAAGAGGCCAAACATGA 2116
|| ||||||||||| ||| |||| |||| | |||||||||| ||| ||||||||||||
Sbjct 1864 GTAGCAAAACTCGCCCGAAA-ATGTCTTAATC-GAAAAGGGAATAAGCGGCCAAACATGA 1921
Query 2117 GAGA-AGTTTCAGTTGAGCTGGAGAGGATTCGTTCATCA 2154
|||| | ||||| | ||||| |||||||| |||||||||
Sbjct 1922 GAGAGA-TTTCAATGGAGCTAGAGAGGATCCGTTCATCA 1959
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88140826930
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5