BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16160.1
Length=2136
Score E
Sequences producing significant alignments: (Bits) Value
Ahg911421 jgi|Araly1|911421|Al_scaffold_0001_1675 2579 0.0
Ahg471812 jgi|Araly1|471812|fgenesh2_kg.1__1766__AT1G16110.1 1489 0.0
Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673 1146 0.0
> Ahg911421 jgi|Araly1|911421|Al_scaffold_0001_1675
Length=2049
Score = 2579 bits (1396), Expect = 0.0
Identities = 1590/1686 (94%), Gaps = 3/1686 (0%)
Strand=Plus/Plus
Query 32 CACCTCCAAACAGTAAGAATTCTTCAACTTCGTGTAACAGAACCTGTGGAGGAATCTCGA 91
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 83 CACCTCCAAACAGTAAGAATTCTTCAACTTCTTGTAACAGAACCTGTGGAGGAATCTCGA 142
Query 92 TTCCGTTCCCATTTGGAATCGGTGGGAAGGATTGTTATCTCAACGGTTGGTACGAGGTTG 151
| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TCCCCTTCCCGTTCGGAATCGGTGGGAAGGATTGTTATCTCAACGGTTGGTACGAGGTTG 202
Query 152 TCTGCAACGCCACCACTTCCGGGTCGTCCGGCACAACTGTTCCATTCCTGTCGAGAATCA 211
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 TCTGCAACCCCACCACTTCCGGGTCGTCCGGCACAACTGTTCCATTCCTGTCGAGAATCA 262
Query 212 ACAGGGAAGTGGTGAACATCTCTCTTCCAGAAGGTAATAATGAACAATACGGAGTGGTTC 271
||||||||||||||||||| ||||||||||| ||| | ||| || ||||||||| ||||
Sbjct 263 ACAGGGAAGTGGTGAACATATCTCTTCCAGATGGT--T-ATGGACCATACGGAGTAGTTC 319
Query 272 ACATCAAAGGTCCTGTGACTTCGTTAGGTTGTTCAAGTAATACTAGTCAAGTACCCCAAA 331
|||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 320 TCATCAAAGGTCCTGTGACATCGTTGGGTTGTTCTAGTAATACTAGTCAAGTACCCCAAA 379
Query 332 AGTCGCTACCGGATTTAAACGTCACGGGCAAGGGCAGCCCATATTTCATCACCGACGAGA 391
|||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 380 AGTCGCTACCGGATCTGAACGTCACGGGCAAGGGCAGTCCATATTTCATCACCGACGAGA 439
Query 392 ACCGCCTCGTGGCTGTGGGTTGCGGTACTAAGGCGTTGATGACGGATATAGAATCAGAGA 451
|||||||| | || || ||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 440 ACCGCCTCATCGCGGTTGGTTGCGGTACAAAGGCGTTGATGACGGATATTGAATCAGAGA 499
Query 452 TCTTGGGTTGTGAATCTAGCTGCAAAGATAGCAAGAGTAGTCAAGAAGTAACAAACTTGT 511
|||||||||||||||| || ||| ||||||||||||||||||||||||||||||||| ||
Sbjct 500 TCTTGGGTTGTGAATCGAGTTGCGAAGATAGCAAGAGTAGTCAAGAAGTAACAAACTCGT 559
Query 512 TATGTGACGGTTACAAATGTTGCCAGGCGAGGATACCGGTGGAACGTCCACAAGCAGTAG 571
|||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||
Sbjct 560 TATGTGACGGTTACAAATGTTGCCAGGCGAGGATACCGTTGGAGCGTCCTCAAGCAGTAG 619
Query 572 GTGTCAATATAGAGAGCTCAGGAGGAGATGGATGCAAGGTTGCCTTCTTGTCTAGCAAGA 631
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 620 GTGTCAATGTAGAGCGCTCAGGAGGAGAAGGATGCAAGGTTGCCTTCTTGTCTAGCAAGA 679
Query 632 GGTATTCCCCGTCAAATGTTACTATACCAGAACAGTTCCATGCTGGTGGCTACGTGGTGG 691
||||||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 680 GGTATTCACTGTCAAATGTTACTGTACCAGAACAGTTCCATGCTGGTGGCTACGTGGTGG 739
Query 692 TAGAGCTAGGTTGGTACTTTGCTACTACGGATTCACGCTTTAGGAACCCCTTGGGTTGTA 751
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
Sbjct 740 TAGAGCTAGGTTGGTACTTTGCTACTTCGGATTCTCGCTTTAGGAACCCCTTGGGTTGCA 799
Query 752 TAAATCTGACATATTCGGGATCTTACTTATCCGGTGATAGTTGCCTTTGCGAGTATGGTT 811
||||| |||| ||||| |||||||||| ||||| ||||| ||| |||||||| |||||||
Sbjct 800 TAAATATGACCTATTCCGGATCTTACTCATCCGATGATAATTGTCTTTGCGACTATGGTT 859
Query 812 ACTTTTCCGAAATGAGTTATAGGAACTGCTATTGCTCCCTTGGCTTCACAGGGAATCCAT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 860 ACTTTTCCGAAATGAGTTATAGGAACTGCTATTGCTCCCTTGGCTTCACAGGGAATCCAT 919
Query 872 ACCTTAGAGGAGGTTGCATTGACAATGATGATTGCAAAGGACCTAATATCTGTGAAGAAG 931
| ||| |||| |||||||| ||| |||||||||||||| |||| ||||| |||| |||||
Sbjct 920 ATCTTCGAGGGGGTTGCATAGACGATGATGATTGCAAACGACCCAATATATGTGGAGAAG 979
Query 932 GCACTTGTGTGAACGTGCCTGGAGGCTATAGATGCGATCCCAAGCCCAAGATAATCAAGC 991
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 980 GCACTTGTGTGAACGTGCGTGGAGGCTATAGATGCTATCCCAAGCCCAAGATAATCAAGC 1039
Query 992 CGGCCAAACCCCTCGTGCTACAAGGGGTTCTTTTAGGTTTAATGGGACTATTGTTCTTAG 1051
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1040 CGGCCAAATCCCTCGTGCTACAAGGGGTTCTTTTAGGTTTGTTGGGACTATTGTTCTTAG 1099
Query 1052 TTGTTGGGACGCTTGGGTTGATTATATTTATAAAAAAGAGAAGGAGGATCATCAGTAGCA 1111
||||||| |||||||||||| | ||| ||||||||||| |||||||||||||||||||||
Sbjct 1100 TTGTTGGTACGCTTGGGTTGGTCATAGTTATAAAAAAGCGAAGGAGGATCATCAGTAGCA 1159
Query 1112 GGAAGTTCTTCAAACGTAATGGAGGCTTGTTGTTAAAACAACAACTAACTACTACAAATG 1171
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1160 GGAAGTTCTTCAAACGTAATGGAGGCTTGTTGTTAAAACAACAACTAACTACTACAGACG 1219
Query 1172 ACGGTAATGTAGACATGTCAAGGCTATTTAGCTCAGAAGAGTTGAAGAAAGCCACCGATA 1231
| ||||||||||||||||| ||| |||||||||| ||||||||||| |||||||| ||||
Sbjct 1220 ATGGTAATGTAGACATGTCGAGGATATTTAGCTCGGAAGAGTTGAAAAAAGCCACAGATA 1279
Query 1232 ACTTTAGCGTGAAGAGGGTGCTTGGGAAAGGCAGTCAAGGAACTGTGTATAAGGGGATGA 1291
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1280 ACTTTAGCGTGAAGAGGGTGCTTGGGAAAGGCAGTCAAGGAACTGTATATAAGGGGATGA 1339
Query 1292 TGGTGGATGGCAAGATCATTGCGGTTAAAAGATCAAAAGTTGTCGATGAAGATAAGCTCG 1351
|||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||| |
Sbjct 1340 TGGTGGATGGAAAGATCATTGCGGTTAAAAAATCCAAAGTTGTCGATGAAGATAAGCTTG 1399
Query 1352 AAAAGTTCATCAATGAGATCATCCTTCTTTCACAGATTAACCATAGGAATATTGTGAAAC 1411
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1400 AAACGTTCATCAATGAGATCATCCTTCTTTCACAGATTAACCATAGGAATATTGTGAAAC 1459
Query 1412 TAATAGGATGTTGCTTGGAAACAGAGGTTCCGATCTTGGTTTACGAATATATTCCCAATG 1471
| | ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1460 TCTTGGGATGTTGCCTGGAAACAGAGGTTCCAATCTTGGTTTACGAATATATTCCCAATG 1519
Query 1472 GAGATATGTTCAAGCGCCTTCATGATGAATCCGACGATTATGCGATGACTTGGGAAGTGC 1531
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 1520 GAGATATGTTCAAGCGCCTTCATGATGAATCCGAAGATTATGTGATGACTTGGGAAGTGC 1579
Query 1532 GTCTTCGCATAGCCATAGAGATCGCGGGAGCTCTAACATACATGCACTCAGCTGCATCAT 1591
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 1580 GTCTTCGCATAGCCATAGAGATCGCGGGAGCTCTTTCATACATGCACTCAGCTGCATCGT 1639
Query 1592 TTCCAATATACCACAGAGATATCAAGACTACCAATATCCTATTGGATGAAAAATACGGAG 1651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1640 TTCCAATATACCACAGAGATATCAAGACTACCAATATCCTATTGGATGAAAAATACGGAG 1699
Query 1652 CTAAGGTTTCTGATTTCGGAACATCAAGATCGGTAACCATTGATCAAACTCACCTGACAA 1711
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1700 CTAAGGTTTCGGATTTCGGAACTTCAAGATCGGTAACCATTGATCAAACTCACCTGACAA 1759
Query 1712 CAATGG 1717
||||||
Sbjct 1760 CAATGG 1765
Score = 418 bits (226), Expect = 9e-116
Identities = 264/282 (94%), Gaps = 4/282 (1%)
Strand=Plus/Plus
Query 1857 GGAAGGAAGGGGGTTGGCAACTCATTTCCTCGAGGCCATGAAAGAAAACAGAGTGATTGA 1916
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1764 GGAAGGCAGGGGCTTGGCAACTCATTTCCTCGAGGCCATGAAAGAAAACAGAGTGATTGA 1823
Query 1917 CATCATTGATATTCGGATCAAAGAAGAAAGCAAGCTTGACCAACTGATGGCAGTGGCGAA 1976
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1824 CATCATTGATATTCGGATCAAAGATGAAAGCAAGCTTGACCAACTGATGGCAGTGGCAAA 1883
Query 1977 ACTCGCTCGAAAGTGTCTTAGCCGGAAAGGGATTAAAAGACCAAACATGAGAGAGGCTTC 2036
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1884 ACTCGCTCGAAAGTGTCTTAGCCGGAAAGGAAGTAAAAGACCAAACATGAGAGAGGCTTC 1943
Query 2037 ACTCGAGCTGGAGAGGATCCGTTCATCACCTGAAGAT---TTAGAGGCCCATATTGAAAA 2093
| | |||||||||||||| |||||||||||||||||| |||||||||||| |||||||
Sbjct 1944 ATTTGAGCTGGAGAGGATTCGTTCATCACCTGAAGATCACTTAGAGGCCCATTTTGAAAA 2003
Query 2094 TGATGATGAAGAGGACCAAGTCATGGAGATCAGCAGAGAATG 2135
||||||||||||||||||| ||||||||||| |||| |||
Sbjct 2004 CGATGATGAAGAGGACCAAGCCATGGAGATCAT-AGAGGATG 2044
> Ahg471812 jgi|Araly1|471812|fgenesh2_kg.1__1766__AT1G16110.1
Length=2149
Score = 1489 bits (806), Expect = 0.0
Identities = 1451/1753 (83%), Gaps = 81/1753 (5%)
Strand=Plus/Plus
Query 86 TCTCGATTCCGTTCCCATTTGGAATCGGTGGGAAGGATTGTTATCTCAACGGTTGGTACG 145
|||| ||||||||||| || |||||| || ||||||||||||||||| || ||||||
Sbjct 110 TCTCAATTCCGTTCCCGTTCGGAATC---GGCAAGGATTGTTATCTCAATGGCTGGTACA 166
Query 146 AGGTTGTCTGCAACGCCACCACTTCCGGGTCGTCCGGCACAACTGTTCCATTCCTGTCGA 205
|||||||||||||| | |||||||| |||||||| |||||||||||||| ||||| || |
Sbjct 167 AGGTTGTCTGCAACACTACCACTTCTGGGTCGTCTGGCACAACTGTTCCGTTCCTCTC-A 225
Query 206 -GAATCAACAGGGAAGTGGTGAACATCTCTCTTCCAGAAGGTAATAATGAACAATACGGA 264
| ||||| || |||||||||||||||||||||||||| |||||| | ||| |||||||
Sbjct 226 CGGATCAATAGTGAAGTGGTGAACATCTCTCTTCCAGATGGTAAT-A--AACCATACGGA 282
Query 265 GTGGTTCACATCAAAGGTCCTGTGACTTCGTTAGGTTGTTC-A--AGTAATACTAGTCAA 321
|||||||| ||||||||||| |||| ||||| ||||| || | |||| ||||||||||
Sbjct 283 GTGGTTCATATCAAAGGTCCACTGACATCGTTGGGTTGCTCTAGTAGTAGTACTAGTCAA 342
Query 322 GTACCCCAAAAGTCGCTACCGGATTTAAACGTCACGGGCAAGGGCAGCCCATATTTCATC 381
||| || ||| ||| | ||| |||| |||||||| |||| ||| |||||||||||| ||
Sbjct 343 GTATCCGAAATGTCATTGCCGAATTTGAACGTCACAGGCAGGGGAAGCCCATATTTCCTC 402
Query 382 ACCGACGAGAACCGCCTCGTGGCT-GTGGGTTGCGGTACTAAGGCGTTGATGACGGATAT 440
||| | |||||||||||||||| | || ||||||||||| ||||| ||||||||||||||
Sbjct 403 ACCCATGAGAACCGCCTCGTGG-TGGTTGGTTGCGGTACAAAGGCTTTGATGACGGATAT 461
Query 441 AGAATCAGAGATCTTGGGTTGTGAATCTAGCTGCAAAGATAGCAAGAGTAGTCAAGAAGT 500
|||||||||||||||||||||||||| |||||| ||| ||||||||||||| |||| ||
Sbjct 462 TGAATCAGAGATCTTGGGTTGTGAATCGAGCTGCGAAGCTAGCAAGAGTAGTGAAGAGGT 521
Query 501 AACAAACTTGTTATGTGACGGTTACAAATGTTGCCAGGCGAGGATACCGGTGGAACGTCC 560
|||||||| | |||||||||| |||||||| |||||||||||||||||| |||| |||||
Sbjct 522 AACAAACTCGATATGTGACGGCTACAAATGCTGCCAGGCGAGGATACCGTTGGAGCGTCC 581
Query 561 ACAAG-CAGTAGGTGTCAATATAGAGAGCTC--A-GG----AG-GAG-ATGGATGCAAG- 609
|| | | | ||| ||| |||||| | | | | || || | | | || ||| ||
Sbjct 582 TCAGGTTA-TTGGTATCAGTATAGAAAACACAAATGGCACAAGAGGGAAAGGGTGC-AGT 639
Query 610 GTTGCCTTCTTGTCTAGCAAGAGGTATTCCCCG-TCAAATGTTA-CTATACCAGAACAGT 667
||||| |||||| ||| |||||||||| | ||| | ||||||| | | ||| |||| |
Sbjct 640 GTTGCGTTCTTGACTAACAAGAGGTATACGCCGAT-TAATGTTACCGA-GCCACAACAAT 697
Query 668 TCCATGCTGGTGGCTACGTGGTGGTAGAGCTAGGTTGGTACTTTGCTACTACGGATTCAC 727
|||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||| |
Sbjct 698 TCCATGCTGGTGGCTACGCGGTGGTAGAGCTAGGTTGGTACTTTGATACTTCGGATTCTC 757
Query 728 GCTTTAGGAACCCCTTGGGTTGTATAAATC-TGA-CATATTCGGGATCTTACTTATCCGG 785
|||||||||||||||| ||||||| ||| | ||| | | | | |||||| |||
Sbjct 758 GCTTTAGGAACCCCTTAGGTTGTAGAAA-CATGACCCGGTAC-AGTTCTTACAGCTCCTT 815
Query 786 TGATAGTTGCCTTTGCGAGTATGGTTACTTTTCCGAAATGAGTTATAGGAACTGCTATTG 845
||||||||| |||||||||| ||||||||| | ||||||||||||| ||||||||
Sbjct 816 TGATAGTTGTAGCTGCGAGTATGATTACTTTTCTGGGATGAGTTATAGGATTTGCTATTG 875
Query 846 CTCCCT-TGGCTTCACAGGGAATCCATACCTTAGAGGA-GGTTGCATTGACAAT-GATGA 902
| || ||||| ||||||||| ||||||||| || | || ||||| ||| || || ||
Sbjct 876 C-AACTATGGCTACACAGGGAACCCATACCTTCGA-CATGGCTGCATAGAC-ATAGACGA 932
Query 903 TTGCAAAGGAC-CTA-ATATCTGTGAAGAAGGCACTTGTGTGAACGTGCCTGGAGGCTAT 960
||| |||||| | | | || |||| |||||| |||||||||||| |||||||| | |
Sbjct 933 ATGCGAAGGACACCACA-AT-TGTGGAGAAGGGACTTGTGTGAACATGCCTGGA-TC-AC 988
Query 961 AGATGCGATCCCAAGCCCAAGATAATC-AAGCCGGCCAAACCCCTC-GTGCTACAAGGGG 1018
| | || | | |||||||||||| | ||||||| ||| |||| ||||| ||||| |
Sbjct 989 ATA-GC--T-GCGAGCCCAAGATAA-CGAAGCCGG-AAAAAGCCTCTGTGCTTCAAGGCG 1042
Query 1019 TTCTTTTAGGTTTAATGGGACTATTGTTCTTAGTTGTTGGGACGCTTG-GGTTGAT-TAT 1076
||||| ||||| | | ||| | |||| || ||| | ||| |||| || || | |
Sbjct 1043 TTCTTATAGGTCT-A--GGAGTGCTGTTTTTCGTT-CTCGGAATCTTGCGGGTG-TACAA 1097
Query 1077 ATTTATAAAAAAGAGAAGGAGGATCATCAGTAGCAGGAAGTTCTTCAAACGTAATGGAGG 1136
||| || || ||| |||||||||||||| | |||| ||| ||||||||||||||||| ||
Sbjct 1098 ATTCATTAAGAAGCGAAGGAGGATCATCCGCAGCAAGAACTTCTTCAAACGTAATGGTGG 1157
Query 1137 CTTGTTGTTAAAACAACAACTAACTACTACAAATG-ACGGTAATGTAGACATGTCAAGGC 1195
|||| |||| |||||| |||||| |||| |||| | |||| || || || |||||||||
Sbjct 1158 CTTGCTGTTGAAACAAAAACTAATTACTTCAAA-GCACGGAAAGGTTGAGATGTCAAGGA 1216
Query 1196 TATTTAGCTCAGAAGAGTTGAAGAAAGCCACCGATAACTTTAGCGTGAAGAGGGTGCTTG 1255
||||||||||| |||||||||||||||| || |||||||| ||| |||| ||||||||||
Sbjct 1217 TATTTAGCTCAAAAGAGTTGAAGAAAGCTACTGATAACTTCAGCATGAACAGGGTGCTTG 1276
Query 1256 GGAAAGGCAGTCAAGGAACTGTGTATAAGGGGATGATGGTGGATGGCAAG-ATCA-TTGC 1313
|| ||||| |||||||||| ||||||||||| ||| |||||||||| || || | ||||
Sbjct 1277 GGCAAGGCGGTCAAGGAACAGTGTATAAGGGAATGCTGGTGGATGG-GAGAAT-AGTTGC 1334
Query 1314 GGTTAAAAGATCAAAAGTTGTCGATGAAGATAAGCTCGAAAAGTTCATCAATG-AGATCA 1372
|||||||||||| |||||||| | |||||| ||| | ||| ||||||| |||| || ||
Sbjct 1335 GGTTAAAAGATCGAAAGTTGTGGGTGAAGACAAGATGGAAGAGTTCATTAATGAAG-TCG 1393
Query 1373 TCCTTCTTTCACAGATTAACCATAGGAATATTGTGAAACTAATAGGATGTTGCT-TGGAA 1431
| |||||||||||||||||||||||||| ||||||||||| || |||||||| | | ||
Sbjct 1394 TACTTCTTTCACAGATTAACCATAGGAACATTGTGAAACTCATGGGATGTTG-TCTAGAG 1452
Query 1432 ACAGAGGTTCCGATCTTGGTTTACGAATATATTCCCAATGGAGATATGTTCAAGCGCCTT 1491
|| || ||||| |||||||||||||| |||||||||||||||||| |||||||||| |||
Sbjct 1453 ACTGAAGTTCCAATCTTGGTTTACGAGTATATTCCCAATGGAGATCTGTTCAAGCGTCTT 1512
Query 1492 CATG----AT--GAATCCGACGATTATGCGATGACTTGGGAAGTGCGTCTTCGCATAGCC 1545
|||| || |||||| | ||||| ||||||||||||||||||||||||| || |||
Sbjct 1513 CATGAAAAATCCGAATCCAATGATTACACGATGACTTGGGAAGTGCGTCTTCGTATCGCC 1572
Query 1546 ATAGAGATCGCGGGAGCTCTAACATACATGCACTCAGCTGCATCATTTCCAATATACCAC 1605
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 1573 ATAGAGATCGCGGGAGCTCTTTCATACATGCACTCAGCTGCATCTTTTCCAATATACCAT 1632
Query 1606 AGAGATATCAAGACTACCAATATCCTATTGGATGAAAAATA-CGGAGCTAAG-GTTTCTG 1663
|||||||| |||||||||||||| ||||| ||||||||||| | |||| || || ||||
Sbjct 1633 AGAGATATTAAGACTACCAATATACTATTAGATGAAAAATATC-GAGC-CAGAGTATCTG 1690
Query 1664 ATTTCGGAACATCAAGATCGGTAACCATTGATCAAACTCACCTGACAACAATGGTTGCAG 1723
||||||| || |||||||| ||||||||||||||||||| || |||||| |||||||||
Sbjct 1691 ATTTCGGGACTTCAAGATCCATAACCATTGATCAAACTCATCTAACAACATTGGTTGCAG 1750
Query 1724 GAACTTTTGGGTACATGGATCCAGAGTACTTCCTATCAAGCCAATATACTGACAAGAGCG 1783
| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1751 GCACTTTTGGGTACATGGATCCGGAGTACTTTTTATCAAGCCAATATACTGACAAGAGCG 1810
Query 1784 ATGTTTATAGTTT 1796
||||||| |||||
Sbjct 1811 ATGTTTACAGTTT 1823
> Ahg911419 jgi|Araly1|911419|Al_scaffold_0001_1673
Length=2043
Score = 1146 bits (620), Expect = 0.0
Identities = 1143/1390 (82%), Gaps = 58/1390 (4%)
Strand=Plus/Plus
Query 46 AAG-AATTCTTCAACTTCGTGTAACAGAACCTGTGGAGGAATCTCGATTCCGTTCCCATT 104
||| ||| |||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 90 AAGTAATACTTCAACTTCTTGTAACAGAACCTGTGGAGGAATCTCGATCCCCTTCCCGTT 149
Query 105 TGGAATCGGTGGGAAGGATTGTTATCTCAACGGTTGGTACGAGGTTGTCTGCAACGCCAC 164
|||||||||||||||||||| ||||||||| |||||||||||||| || ||| ||||
Sbjct 150 CGGAATCGGTGGGAAGGATTGCTATCTCAACAACTGGTACGAGGTTGTATGTAACACCAC 209
Query 165 CACTTCCGGGTCGTCCGGCACAACTGTTCCATTCCTGTCGAGAATCAACAGGGAAGTGGT 224
|||||||||||| ||| |||||||||||||| ||||||| |||||||| | |||||||||
Sbjct 210 CACTTCCGGGTCTTCCAGCACAACTGTTCCACTCCTGTCTAGAATCAATAAGGAAGTGGT 269
Query 225 GAACATCTCTCTTCCAGAAGGTAATAATGAACAATACGGAGTGGTTCACATCAAAGGTCC 284
|||||||| ||||||||| ||| || ||||| |||||||||||||||||||||||||||
Sbjct 270 GAACATCTATCTTCCAGATGGTTATCCTGAACCATACGGAGTGGTTCACATCAAAGGTCC 329
Query 285 TGTGACTTCGTTAGGTTGTTCAAGTAATACTAGTCAAGTACCCCAAAAGTCGCTAC-CGG 343
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||| | |||
Sbjct 330 TGTGACTTCGTTGGGTTGTTCTAGTAATACTAGTCAAGTACCACAAAAGTCGCT-CTCGG 388
Query 344 ATTTAAACGTCACGGGCAAGGGCAGCCCATATTTCATCACCGACGAGAACCGCCTCGTGG 403
||| || ||||| |||||||| |||||||||||| |||| |||||||||||||||||||
Sbjct 389 GTTTGAATGTCACAGGCAAGGGTAGCCCATATTTCCTCACTGACGAGAACCGCCTCGTGG 448
Query 404 CTGTGGGTTGCGGTACTAAGGCGTTGATGACGGATATAGAATCAGAGATCTTGGGTTGTG 463
| || || || ||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 449 CGGTTGGCTGTGGTACCAAGGCTTTGATGACGGATATTGAATCAGAGATCTTGGGTTGTG 508
Query 464 AATCTAGCTGCAAAGATAGCAAGAGTAGTCAAGAAGTAACAAACTTG-TTATGTGACGGT 522
| || || || |||| |||| ||||||| ||||||||||||||| | || ||| |||||
Sbjct 509 AGTCGAGTTGTGAAGACAGCACGAGTAGTAAAGAAGTAACAAACTCGATT-TGTAACGGT 567
Query 523 TACAAATGTTGCCAGGCGAGGATACCGGTGGAACGTCCACAAGCAGTAGGTGTCAATATA 582
|||||||| |||||||| || |||||| || ||||| |||||| | |||||||| |||
Sbjct 568 TACAAATGCTGCCAGGCAAGAATACCGACCGAGCGTCCGCAAGCAATGGGTGTCAACATA 627
Query 583 GAGAGC--T-------CAGGAGGAG-ATGGATGCAAGGTTGCCTTCTTGTCTAGCAAGAG 632
|||| | | ||||||||| | || ||||| ||||| || ||| | | || |||
Sbjct 628 GAGATCAATAATGGTACAGGAGGAGGAGGG-TGCAAAGTTGCTTTTTTGACGAACACGAG 686
Query 633 GTATTCCCCGTCAAATGTTACTATA-CCAGAACAGTTCCATGCTGGTGGCTACGTGGTGG 691
||||| |||||||||||||| | | |||||| |||||||||| | |||||||| |||||
Sbjct 687 GTATTTACCGTCAAATGTTAC-AGAGCCAGAAAAGTTCCATGCCGATGGCTACGCGGTGG 745
Query 692 TAGAGCTAGGTTGGTACTTTGCTACTACGGATTCACGCTTTAGGAACCCCTTGGGTTGTA 751
|||||||||| |||||||||| |||| | ||||| ||||||||||||||||||||||| |
Sbjct 746 TAGAGCTAGGATGGTACTTTGATACTTCAGATTCTCGCTTTAGGAACCCCTTGGGTTGCA 805
Query 752 TAAATCTGACATATTC----GGGATCTTACTTATCCGGT-GATAGTTGCCTTTGCGAGTA 806
|||||||||| ||| ||| |||||||| | ||| || | ||||||||| ||||
Sbjct 806 TAAATCTGACCCGTTCTAATGGG-TCTTACTT-TGCGGACGACAACTGCCTTTGCCAGTA 863
Query 807 TGGTTACTTTTCCGAAATGAGTTATAGGAACTGCTATTGCTCCCTTGGCTTCACAGGGAA 866
|| ||||||||||| || | ||||||||||||||||||| | |||||||||||| ||
Sbjct 864 CGGGTACTTTTCCGATATCAATTATAGGAACTGCTATTGCGGCAATGGCTTCACAGGAAA 923
Query 867 TCCATACCTTA-GAGGAGGTTGCATTGACAATGATGATTGCAAAGGACCTAATATCTGTG 925
|||||| | | |||| || ||||| |||| |||||| ||||||| ||| || | || |
Sbjct 924 CCCATACAT-ACGAGGCGGATGCATAGACATTGATGAATGCAAAGTACCCAACAAGTGCG 982
Query 926 AAGAAGGCACTTGTGTGAACGT-GCCTGGAG-GCTATAGATGCGATCCCAAGCCCAAGAT 983
||||| ||||||| |||| | | |||| | || | ||| | | |||| | |||
Sbjct 983 GAGAAGATACTTGTGAGAACATTGT-TGGAATG-TACAAATGTG-TGCCAA----A-GAT 1034
Query 984 AATCAAGCCGGCCAAACCC-CTCGTGCTACAAGGGGTTCTTTTAGGTTTAATGGGACTAT 1042
|| |||||| ||||||||| || || || | |||||| ||| ||||||| ||||||| |
Sbjct 1035 AACCAAGCCAGCCAAACCCGCT-GTTCTTCGAGGGGTCCTTATAGGTTTGTTGGGACT-T 1092
Query 1043 -TGTT-CTTAGTTGTTGGGACGCTT-GGGTTGATT-ATATTTATAAAAAAGAGAAGGAGG 1098
|||| ||| ||| |||||| || ||||| ||| | | |||| | |||| || |||||
Sbjct 1093 CTGTTTCTT-GTTATTGGGATT-TTCGGGTT-ATTCAAAGTTATTAGAAAGCGACGGAGG 1149
Query 1099 ATCATCAGTAGCAGGAAGTTCTTCAAACGTAATGGAGGCTTGTTGTTAAAACAACAACTA 1158
|||||| |||| | ||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1150 ATCATCCGTAGTATGAAGTTCTTCAAACGTAATGGAGGCTTGTTGTTGAAACAACAGTTA 1209
Query 1159 ACTACTACAAATGACGGTAATGTAGACATGTCAAGGCTATTTAGCTC-AGAAGAGTTGAA 1217
|| || | ||| ||||||| ||| || ||||||| |||| ||||| ||| |||||| |
Sbjct 1210 ACAAC-A-AAA-GACGGTAGTGTCGAGATGTCAAAAATATTCAGCTCGAGA-GAGTTGGA 1265
Query 1218 GAAAGCCACCGATAACTTTAGCGT-GA-AGAGGGTGCTTGGGAAAGGCAGTCAAGGAACT 1275
||||||||| ||||||| |||| | || |||| |||||||| |||| ||||||| |||
Sbjct 1266 GAAAGCCACTGATAACTATAGCATTGATAGAG--TGCTTGGGCAAGGTGGTCAAGGCACT 1323
Query 1276 GTGTATAAGGGGATGATGGTGGATGGCAAG-ATCATTGCGGTTAAAAGATCAAAAGTTGT 1334
||||| ||||| ||| | || ||||| | | || |||| ||||||||||| ||||||||
Sbjct 1324 GTGTACAAGGGAATGCTAGTAGATGGGA-GTATTGTTGCTGTTAAAAGATCGAAAGTTGT 1382
Query 1335 CGATGAAGATAAGCTCGAAAAGTTCATCAATGAGATCATCCTTCTTTCACAGATTAACCA 1394
|||||||| || | ||| |||| ||||||||| || ||||||| ||||||||||||||
Sbjct 1383 GGATGAAGACAAAATGGAAGAGTTTATCAATGAGGTCGTCCTTCTCTCACAGATTAACCA 1442
Query 1395 TAGGAATATT 1404
|||||| |||
Sbjct 1443 TAGGAACATT 1452
Score = 568 bits (307), Expect = 8e-161
Identities = 493/583 (85%), Gaps = 11/583 (2%)
Strand=Plus/Plus
Query 1552 ATCGCGGGAGCTCTAACATACATGCACTCAGCTGCATCATTTCCAATATACCACAGAGAT 1611
||||| |||||||| ||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1453 ATCGCAGGAGCTCTTACATACATGCACTCAGCTGCATCTTTTCCAATATTCCACAGAGAT 1512
Query 1612 ATCAAGACTACCAATATCCTATTGGATGAAAAATACGGAGCTAAGGTTTCTGATTTCGGA 1671
||||||||||||||||| ||||||||||| |||||| |||| ||| | ||||||||||||
Sbjct 1513 ATCAAGACTACCAATATACTATTGGATGAGAAATACCGAGCAAAGATGTCTGATTTCGGA 1572
Query 1672 ACATCAAGATCGGTAACCATTGATCAAACTCACCTGACAACAATGGTTGCAGGAACTTTT 1731
|| |||||||||||||||| ||||||||||||| |||||||| | ||||| |||||||||
Sbjct 1573 ACTTCAAGATCGGTAACCACTGATCAAACTCACTTGACAACATTAGTTGCGGGAACTTTT 1632
Query 1732 GGGTACATGGATCCAGAGTACTTCCTATCAAGCCAATATACTGACAAGAGCGATGTTTAT 1791
|||||||||||||||||||||||||| || ||||| || ||| |||| |||||||| |||
Sbjct 1633 GGGTACATGGATCCAGAGTACTTCCTGTCGAGCCAGTACACTCACAAAAGCGATGTATAT 1692
Query 1792 AGTTTCGGGGTTGTCCTGGTAGAGCTCATAACTGGAGAAAAACCGTTGTCCCGAATTCGT 1851
|||||||||||||| |||| ||||||||||| ||||||||||| ||||||| | ||
Sbjct 1693 AGTTTCGGGGTTGTGTTGGTGGAGCTCATAACAGGAGAAAAACCAATGTCCCGTGTCCGG 1752
Query 1852 TCTGAGGAAGGAAGGGGGTTGGCAACTCATTTCCTCGAGGCCATGAAAGAAAACAGAG-T 1910
||||| ||||| | || ||||||||| |||||||||| || |||||||| ||||||| |
Sbjct 1753 TCTGAAGAAGGCATAGGTTTGGCAACTTATTTCCTCGAAGCAATGAAAGAGAACAGAGCT 1812
Query 1911 GATTGACATCATTGATATTCGGATCAAAGAAGAAAGCAAGCTTGACCAACTGATGGCAGT 1970
| ||||||| |||||||||||||||| ||||||||||||| | | | ||||| ||
Sbjct 1813 G-TTGACATAATTGATATTCGGATCAGGGAAGAAAGCAAGC---A--AG-TAATGGCGGT 1865
Query 1971 GGCGAAACTCGCTCGAAAGTGTCTTAGCCGGAAAGGGATTAAAAGACCAAACATGAGAGA 2030
|| |||||||| ||||| ||||||| || ||||||| ||| | ||||||||||||||
Sbjct 1866 AGCAAAACTCGCCCGAAAATGTCTTAATCGAAAAGGGAATAAGCGGCCAAACATGAGAGA 1925
Query 2031 GGCTTCACTCGAGCTGGAGAGGATCCGTTCATCACCTGAAGATTTAGAGGCCCATATTGA 2090
| |||| | ||||| |||||||||||||||||||| |||||||||| | |||| ||
Sbjct 1926 GATTTCAATGGAGCTAGAGAGGATCCGTTCATCACCCAAAGATTTAGATGTCCATCCGGA 1985
Query 2091 A-AAT--GATGATGAAGAGGACCAAGTCATGGAGATCAGCAGA 2130
| || || || |||||||| ||| | ||||| |||| ||||
Sbjct 1986 AGAAGAAGAAGAAGAAGAGGATCAACTTATGGAAATCAACAGA 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80370416950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5