BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16170.1

Length=697
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg471815 jgi|Araly1|471815|fgenesh2_kg.1__1769__AT1G16170.1         628    1e-179


> Ahg471815 jgi|Araly1|471815|fgenesh2_kg.1__1769__AT1G16170.1
Length=626

 Score =  628 bits (340),  Expect = 1e-179
 Identities = 485/548 (89%), Gaps = 38/548 (7%)
 Strand=Plus/Plus

Query  44   TCCCTAAATTCCCGTTTTATGTAACGGACATAATAAGCCGCGTACGGCGTATCCGGCAAA  103
            ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct  1    TCCCTAAATTCCCGTTTTATGAAACGGACTTAATAAGCCGCGTACGGCGTATCCGGCAAA  60

Query  104  TCGGCCCAGCTCGAGCCATCATCAATCTACGGAGGAGA--TC-C-Atctctc--tctctc  157
            |||||||||||     ||  | |   ||||||||||||  || |  ||||||  ||||||
Sbjct  61   TCGGCCCAGCT-----CA--A-C---CTACGGAGGAGATCTCTCTCTCTCTCTATCTCTC  109

Query  158  tctcCATATCG---CAA--CAAC-A--CTGCT-GA-AGATTTCGGGGGTTGTCGACGGAG  207
            |||||| ||||   |||  |||| |  ||||| || ||||||  ||||||||||||||||
Sbjct  110  TCTCCACATCGCAACAAGCCAACAACGCTGCTGGAGAGATTT-TGGGGTTGTCGACGGAG  168

Query  208  CTGGAATCTAGCTTTTTCTTCTCCAGATCTCTAAACCGATTCTCACC----GG--TT-AA  260
            |||||||| |||||||||||||||||||||||  |||||||||||||    ||  ||  |
Sbjct  169  CTGGAATC-AGCTTTTTCTTCTCCAGATCTCT-TACCGATTCTCACCGGTTGGTTTTCTA  226

Query  261  TTGGTATTATAAAGCCATGGTTCTTGATGGGCTTGTATCTTCACCGTCAAGGAGACAACA  320
            |||||||||| |||| ||||||||||||||||||||||||||||| | ||||||||||||
Sbjct  227  TTGGTATTATTAAGCAATGGTTCTTGATGGGCTTGTATCTTCACCATTAAGGAGACAACA  286

Query  321  ATGTCTAAAGAAGCAGTGGGACGAGTTGGGTAGCTGGTCGACTCTTATTCAGAGGCATCA  380
             |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  287  GTGTCTAAAGAAGCAATGGGATGAGTTGGGTAGCTGGTCGACTCTTATTCAGAGGCATCA  346

Query  381  ATATCTCTTAACAGCTTTGGCTCTTTTGGCTTTCCTCTGTACTGTTTATCTTTACTTTGC  440
            ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| ||
Sbjct  347  ATATCTCTTGACAGCATTGGCTCTTTTGGCGTTCCTCTGTACTGTTTATCTTTACTTCGC  406

Query  441  AGTCACTTTAGGCGCTAGGCACTCGTCCTGCTATGGCTTGACCGGGAAAGACAAGGCAAT  500
             || ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  407  TGTTACTTTAGGCGCCAGGCACTCGTCGTGCTATGGCTTGACCGGGAAAGACAAGGCAAT  466

Query  501  GTGTCAATTACAACTTGTTCAAGCTCTCTCCAAAGGGAAACTTAAATTCTTCTAGACTGT  560
            |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  467  GTGTCAATTACAACATGTTCAAGCTATCTCCAAAGGGAAACTTAAATTCTTCTAGACTGT  526

Query  561  TTATCTAT  568
            | || |||
Sbjct  527  T-ATTTAT  533



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25618600224


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5