BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16180.1
Length=1618
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471816 jgi|Araly1|471816|fgenesh2_kg.1__1770__AT1G16180.1 2211 0.0
> Ahg471816 jgi|Araly1|471816|fgenesh2_kg.1__1770__AT1G16180.1
Length=1463
Score = 2211 bits (1197), Expect = 0.0
Identities = 1390/1480 (94%), Gaps = 26/1480 (2%)
Strand=Plus/Plus
Query 148 ATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCCTGCGATGCTTGCCGT 207
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGTTTGCAGCTTCTTGTCTCGCATCGTGTTGTGCTGCTTGTGCATGCGATGCTTGCCGT 60
Query 208 ACTGTGGTTTCTGGGATCAGCAGACGTTCTGCTAGAATTGCTTACTGTGGTCTCTTTGCA 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACTGTGGTTTCTGGGATCAGCAGACGTTCTGCTAGAATTGCTTACTGTGGTCTCTTTGCA 120
Query 268 CTTTCCTTAATCGTTTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTC 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTTCCTTAATCGTTTCATGGATTCTCCGTGAAGTTGCTGCTCCTCTCATGGAGAAGCTC 180
Query 328 CCTTGGATTAACCATTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTG 387
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CCTTGGATTAACCACTTTCACAAGACACCTGATCGTGAATGGTTTGAGACTGATGCTGTG 240
Query 388 TTGCGTGTCAGCTTAGGGAATTTCTTGTTTTTCTCTATTCTATCGGTTATGATGATCGGT 447
|||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 241 TTGCGTGTCAGCTTAGGGAATTTCTTATTTTTCTCGATTCTGTCGGTTATGATGATCGGT 300
Query 448 GTGAAAAATCAGAAAGACCCTCGTGATGGTATACACCATGGTGGTTGGATGATGAAAATA 507
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 GTCAAAAATCAGAAAGACCCTCGTGATGGTATACACCATGGTGGTTGGATGATGAAGATA 360
Query 508 ATCTGTTGGTGCATTTTAGTCATCTTTATGTTCTTCCTTCCAAATGAAATCATCAGTTTC 567
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 361 ATCTGTTGGTGCATTTTAGTCATCTTAATGTTCTTCCTTCCCAATGAAATCATCAGTTTC 420
Query 568 TATGAGTCGATGTCAAAGTTTGGTGCTGGATTTTTCCTGCTTGTTCAAGTTGTACTTCTT 627
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 421 TATGAGTCGATGTCAAAGTTTGGTGCTGGATTTTTTCTTCTTGTTCAAGTTGTGCTTCTT 480
Query 628 TTGGATTTTGTTCATGGATGGAATGACACATGGGTTGGCTACGACGAGCAGTTCTGGTAT 687
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 TTGGATTTCGTTCATGGGTGGAATGACACGTGGGTTGGCTACGACGAGCAGTTCTGGTAT 540
Query 688 GCTGCTTTGCTCGTTGTTTCTCTTGTATGTTACTTGGCAACATTCGTCTTCTCTGGGTTT 747
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 541 GCTGCGTTGCTCGTTGTGTCTCTTGTATGTTACTTGGCAACATTCGTCTTCTCTGGGCTT 600
Query 748 CTCTTCCACTGGTTTACTCCATCTGGACATGATTGTGGACTCAACACCTTCTTCATTATC 807
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 CTCTTCCACTGGTTTACTCCATCTGGACATGATTGTGGACTCAACACTTTCTTCATTATC 660
Query 808 ATGACTTTGATATTTGTATTCGTCTTTGCCATTGTAGTTTTGCATCCTACTGTCGGTGGA 867
||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||
Sbjct 661 ATGACTTTGATATTTGTATTCGTCTTTGCTGTCGTAGTTTTGCATCCTGCTGTCGGTGGA 720
Query 868 AGCATTTTACCAGCATCGGTTATATCTCTGTACTGCATGTACCTCTGTTACAGTGGACTT 927
||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 721 AGCATTTTACCAGCATCCGTTATATCTCTCTACTGCATGTACCTCTGTTACAGCGGACTT 780
Query 928 GCAAGTGAACCCCGGGATTACGAGTGCAATGGTCTCCACAATCACTCTAAAGCTGTTTCA 987
|||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 781 GCAAGTGAGCCCCGTGATTACGAGTGCAATGGTCTCCACAAACACTCCAAAGCTGTTTCA 840
Query 988 ACAGGCACAATGACCATTGGCTTACTCACAACTGTTCTCTCGGTTGTTTATTCTGCTGTT 1047
|||||||||||||||||||| |||||||||||||| ||||| || |||||||| ||||||
Sbjct 841 ACAGGCACAATGACCATTGGATTACTCACAACTGTACTCTCTGTCGTTTATTCCGCTGTT 900
Query 1048 CGTGCTGGTTCTTCCACTACTCTTCTCTCCCCTCCTGATTCTCCTCGCGCAGAGAAGCCT 1107
|||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 901 CGTGCTGGTTCTTCAACTACTCTTCTCTCACCTCCTGATTCTCCTCGGGCAGAGAAGCCG 960
Query 1108 CTGCTTCCGATAGACGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTT 1167
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 CTGCTTCCGATAGATGGGAAAGCAGAAGAGAAGGAAGAGAAAGAGAATAAAAAACCAGTG 1020
Query 1168 TCATACTCATACGCATTCTTCCACATCATCTTCTCCCTTGCGAGCATGTACTCTGCAATG 1227
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1021 TCATACTCATACGCATTCTTCCACATCATCTTCTCCCTCGCGAGCATGTACTCTGCAATG 1080
Query 1228 CTCCTAACCGGCTGGTCAACTTCAGTTGGTGAAAGTGGTAAGCTGGTGGATGTCGGGTGG 1287
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1081 CTCTTAACCGGCTGGTCAACTTCAGTTGGTGAAAGTGGTAAGCTGGTGGATGTAGGGTGG 1140
Query 1288 CCTTCAGTGTGGGTCCGTGTTGTGACCAGCTGGGCCACTGCTGGTCTCTTCATCTGGTCC 1347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CCTTCAGTGTGGGTCCGTGTTGTGACCAGCTGGGCCACTGCTGGTCTCTTCATCTGGTCG 1200
Query 1348 CTTGTTGCTCCCATTCTCTTCCCCGACCGTGAGTTCTGAGCTAATGCATCTACTTGAGAT 1407
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1201 CTTGTTGCTCCCATTCTCTTCCCCGACCGTGAGTTCTGAGCTAATGCATCTACTGGAGAT 1260
Query 1408 TCTGAATAACTTTTCATGAATCTTCAATTTGTaaaaaaa------T-ATTCGATCTTTCT 1460
||||| ||||||||||||||||| |||||||||||||| | |||| |||||||
Sbjct 1261 CCTGAAAAACTTTTCATGAATCTTGAATTTGTAAAAAAAAAAAAATTATTCTATCTTTCG 1320
Query 1461 ACTATAATAGAA-CATCGTGTGCTTAATCACGAATGGCCTTTGTTGGCCCTTCTGTAATA 1519
||||||||||| | |||| |||||||||||| |||| |||||||||| | |||||||||
Sbjct 1321 ACTATAATAGAGTC-TCGTTTGCTTAATCACGCATGGTCTTTGTTGGCACATCTGTAATA 1379
Query 1520 TGAAGATGATATAAATAAATTCCTTTCTCGTAATTTTCATCTGTCTCGACTTCTCCACAA 1579
| || | | |||||||||||||||||||| ||||||| ||| ||||||
Sbjct 1380 T-AA--T--T-----------CCTTTCTCGTAATTTTCATCGGTCTCGAATTCCCCACAA 1423
Query 1580 TTGCGTTTTGCCCGATTC-GCGTTTGTGTTTTGTTTGGTC 1618
|||||||||| ||||| |||||||| ||||||||||||
Sbjct 1424 TTGCGTTTTGTACGATTTAGCGTTTGTCTTTTGTTTGGTC 1463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60639670040
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5