BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16190.1
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312599 jgi|Araly1|312599|fgenesh1_pm.C_scaffold_1001379 1624 0.0
Ahg316857 jgi|Araly1|316857|fgenesh1_pm.C_scaffold_2001890 989 0.0
> Ahg312599 jgi|Araly1|312599|fgenesh1_pm.C_scaffold_1001379
Length=1095
Score = 1624 bits (879), Expect = 0.0
Identities = 1035/1109 (93%), Gaps = 16/1109 (1%)
Strand=Plus/Plus
Query 116 ATGAAGCTCACTGTTAAGACTCTCAAGGGTAGCCATTTTGAGATTAGGGTTCTTCCCACC 175
||||||||||| |||||||||||||||||||||||||| || ||||| |||| ||||||
Sbjct 1 ATGAAGCTCACCGTTAAGACTCTCAAGGGTAGCCATTTCGAAATTAGAGTTCAGCCCACC 60
Query 176 GACACGATAATGGCGGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCT 235
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACACGATAATGGCAGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCT 120
Query 236 TGTGGGCAGCAATTACTGATTCACAATGG-AAAGGTTTTGAAAGATGAAACTACCTTGGT 294
||||| ||||| || |||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 121 TGTGGACAGCAGTTGCTGATTCACAATGGCAAA-GTTTTGAAAGATGAAACTACTTTGGT 179
Query 295 GGAGAACAAGGTTACCGAGGAGGGTTTTCTTGTCGTGATGCTTAGCAAGAGCAAAACTGC 354
|||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 180 GGAGAACAAGGTTACCGAAGAAGGTTTTCTTGTCGTCATGCTTAGCAAGAGCAAAACTGC 239
Query 355 AAGTTCAGCTGGTCCCTCTTCTACTCAGCCTACTTCTACCACGACATCTACCATATCTTC 414
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 240 AAGTTCAGCTGGTCCCTCTTCCACTCAACCTACTTCTACCACGACATCTACCATATCTTC 299
Query 415 AACCACGCTTGCAGCTCCGTCGACAACCCAGTCTATTGCTGTGCCGGCTTCAAATTCTAC 474
|||| ||||||||| | | || |||||| |||||||| ||||||||||||||
Sbjct 300 AACCCCGCTTGCAG---C-T-------CC-GTCTATAGCTGTGCCAGCTTCAAATTCTAC 347
Query 475 TCCCGTTCAAGAACAACCAACGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTT 534
||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 348 TCCTGTTCAAGAACAGCTGCCGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTT 407
Query 535 AGTTAGTGGCAGTAGTATTGAGCAAATGGTTCAACAAATAATGGAAATGGGAGGAGGCAG 594
|||||||||||||||| ||||||| ||||| |||||||||||||||||||| ||||||||
Sbjct 408 AGTTAGTGGCAGTAGTGTTGAGCAGATGGTACAACAAATAATGGAAATGGGGGGAGGCAG 467
Query 595 TTGGGACAAAGAAACGGTTACTCGTGCACTTCGTGCAGCATATAACAACCCTGAGAGAGC 654
|||||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 468 CTGGGACAAAGAAACAGTTACTCGTGCACTTCGTGCAGCGTATAACAATCCTGAGAGAGC 527
Query 655 AGTGGATTATCTATATTCTGGAATTCCTGAAACAGTAACCATTCCAGCAACTAATTTATC 714
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 528 AGTGGATTATCTATATTCTGGAATTCCCGAAACAGTAGCCATTCCAGCAACTAATTTATC 587
Query 715 TGGAGTAGGATCTGGTAG-AGAACTTACTGCTCCTCCTCCCTCTGGAGGCCCTAATTCAT 773
|||||||||||||||| | ||||||||| ||||||||| |||||||||| ||||||||||
Sbjct 588 TGGAGTAGGATCTGGT-GCAGAACTTACAGCTCCTCCTGCCTCTGGAGGACCTAATTCAT 646
Query 774 CTCCTCTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCAGCAGGTGGAGATCTTGGAA 833
||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 647 CTCCTTTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCTGGAGGTGGAGATCTTGGAA 706
Query 834 CGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCA 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 707 CGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATGGTCAATTCCA 766
Query 894 ACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAGCAGAACCCCCAACTTCTGA 953
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 767 ACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAACAGAACCCTCAACTTCTGA 826
Query 954 GGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCCTACGAAGGAT 1013
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 827 GGCTAATTCAAGAGAACCAAGCAGAATTTCTTCAGTTACTAAACGAGCCCTATGAAGGAT 886
Query 1014 CTGACGGGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCACTCAGTCAACG 1073
||||||||||| ||||||| ||||| ||||| || ||||||||||||||| |||||||||
Sbjct 887 CTGACGGGGATATGGATATTTTCGACCAACCCGAGCAAGAAATGCCCCACGCAGTCAACG 946
Query 1074 TTACCCCTGAAGAGCAAGAATCAATTGAACGGCTTGAGGCAATGGGGTTTGATAGAGCAA 1133
|||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 947 TTACCCCTGAAGAGCAAGAAGCGATTCAACGGCTTGAGGCAATGGGGTTTGATAGAGCAC 1006
Query 1134 TAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTGCAAACTATCTAC 1193
||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 1007 TAGTCATAGAAGCATTCCTTGCATGTGACCGTAACGAGGAATTGGCTGCAAACTATCTGC 1066
Query 1194 TAGAGCACTCAGCAGATTTTGAAGACTGA 1222
|||||||||||||||||||||||||||||
Sbjct 1067 TAGAGCACTCAGCAGATTTTGAAGACTGA 1095
> Ahg316857 jgi|Araly1|316857|fgenesh1_pm.C_scaffold_2001890
Length=1098
Score = 989 bits (535), Expect = 0.0
Identities = 932/1121 (83%), Gaps = 37/1121 (3%)
Strand=Plus/Plus
Query 116 ATGAAGCTCACTGTTAAGACTCTCAAGGGTAGCCATTTTGAGATTAGGGTTCTTCCCACC 175
||||||||||| ||||| ||||||||||| || |||||||| ||||||||||| ||| ||
Sbjct 1 ATGAAGCTCACCGTTAAAACTCTCAAGGGCAGTCATTTTGAAATTAGGGTTCTACCCTCC 60
Query 176 GACACGATAATGGCGGTGAAGAAGAATATTGAAGATTCACAAAGCAAAGACAACTATCCT 235
|| |||||||||||||||||||||||||| |||||||||||| | ||| |||| |||||
Sbjct 61 GATACGATAATGGCGGTGAAGAAGAATATAGAAGATTCACAAGGAAAAAACAATTATCCA 120
Query 236 TGTGGGCAGCAATTACTGATTCACAATGGAAAGGTTTTGAAAGATGAAACTA-CCTTGGT 294
||||| || ||||| |||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 121 TGTGGCCAACAATTGTTGATTCACAATGGAAAAGTTTTGAAAGATGAAACTAGCC-TGGT 179
Query 295 GGAGAACAAGGTTACCGAGGAGGGTTTTCTTGTCGTGATGCTTAGCAAGAGCAAAACTGC 354
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||||||||
Sbjct 180 CGAGAACAAGGTTACCGAGGAAGGCTTTCTCGTCGTTATGCTTAGCAAGAGCAAAACTGC 239
Query 355 AAGTTCAGCTGGTCCCTCTTCTACTCAGCCTACTTCTACCACGACATCTACCATATCTTC 414
| |||||||||||| ||||| |||||| | | | | || |||||| ||||||
Sbjct 240 AGGTTCAGCTGGTCAGTCTTCGGTTCAGCCGGC-T-T--C-CG----CTACCACATCTTC 290
Query 415 AACCACGCTTGCAGCTCCGTCGACAACCCAGTCTATTGCTGTGCCGGCTTCAAATTCTAC 474
|| | || || | | || || |||||||||||||| |||||||| ||||| | |||
Sbjct 291 GACTAAGCCTGAAACACCATCTACAACCCAGTCTATAGCTGTGCCTGCTTC--A-CCTAT 347
Query 475 TCCCGTTCAAGAACAACCAACGGCACAAAGTGACACCTATGGTCAAGCTGCTTCAACTTT 534
||| | |||||||||||| ||||||| | |||||||||||| |||||||| ||||| ||
Sbjct 348 TCCTGCTCAAGAACAACCTGCGGCACAGACTGACACCTATGGACAAGCTGCGTCAACATT 407
Query 535 AGTTAGTGGCAGTAGTATTGAGCAAATGGTTCAACAAATAATGGAAATGGGAGGAGGCAG 594
||||||||||||||| |||| |||||||| ||||| ||||||||||||||||| || ||
Sbjct 408 GGTTAGTGGCAGTAGTCTTGAACAAATGGTCCAACAGATAATGGAAATGGGAGGCGGAAG 467
Query 595 TTGGGACAAAGAAACGGTTACTCGTGCACTTCGTGCAGCATATAACAACCCTGAGAGAGC 654
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 468 TTGGGACAAAGAAACAGTTACTCGTGCACTTCGTGCAGCTTATAACAACCCTGAGAGAGC 527
Query 655 AGTGGATTATCTATATTCTGGAATTCCTGAAACAG-T-AACCA--T-TC-CAGCAACTAA 708
|||||||||||| || ||||||||||||||||| | | || | | | ||| | ||
Sbjct 528 AGTGGATTATCTGTACTCTGGAATTCCTGAAACTGCTGAAGTAGCTGTGGCAGTACCTGG 587
Query 709 TT-T-ATCTGGAGTAGGATCTGGTAG-AGAACTTACTGCTC-CTCCTCCCTCTGGAGGCC 764
| | ||| |||||| ||| | || | ||| || | ||| | |||||||| |
Sbjct 588 GGCTCAGATGGC--AGGATCCGGT-GCAGCCC---CTG-TCGCACCTGCATCTGGAGGAC 640
Query 765 CTAATTCATCTCCTCTGGATTTGTTTCCCCAGGAAGCAGTTTCTGATGCAG-CAGGTGGA 823
|||| ||||||||| ||||||| ||||| |||||| ||||| ||| ||| | | |||
Sbjct 641 CTAACTCATCTCCTTTGGATTTATTTCCTCAGGAAACAGTTGCTGCTGCTGGCTC-TGGT 699
Query 824 GATCTTGGAACGCTTGAATTCCTCAGAGGCAATGATCAGTTCCAACAATTACGCTCCATG 883
||||| || || |||||||| || ||| |||||| |||||||||||||||||| |||||
Sbjct 700 GATCTCGGGACACTTGAATTTCTTAGAAACAATGACCAGTTCCAACAATTACGCACCATG 759
Query 884 GTCAATTCCAACCCCCAGATTCTGCAGCCTATGCTTCAAGAGCTCGGAAAGCAGAACCCC 943
||| | |||||||| || ||||| ||||| |||||||| || || |||||||| |||||
Sbjct 760 GTCCACTCCAACCCTCAAATTCTTCAGCCCATGCTTCAGGAACTTGGAAAGCAAAACCCT 819
Query 944 CAACTTCTGAGGCTAATTCAAGAGAACCAAGCCGAATTTCTTCAGTTACTAAACGAGCCC 1003
||||||||||||||||||||||| ||||| || || |||||||||||| |||||||||||
Sbjct 820 CAACTTCTGAGGCTAATTCAAGAAAACCAGGCAGAGTTTCTTCAGTTAGTAAACGAGCCC 879
Query 1004 TACGAAGGATCTGACGGGGATGTGGATATCTTCGATCAACCTGATCAAGAAATGCCCCAC 1063
|| || |||||||||||||||| ||| || ||||||||||| || ||||||||||| ||
Sbjct 880 TATGAGGGATCTGACGGGGATGCGGACATGTTCGATCAACCCGAGCAAGAAATGCCACA- 938
Query 1064 T-C-AGTCAACGTTACCCCTGAAGAGCAAGAATCAATTGAACGGCTTGAGGCAATGGGGT 1121
| | | | ||||||||||| | ||||||||| | ||| ||||||| ||||||||||| |
Sbjct 939 TGCCATT-AACGTTACCCCAGCAGAGCAAGAGGCGATTCAACGGCTCGAGGCAATGGGAT 997
Query 1122 TTGATAGAGCAATAGTCATAGAAGCCTTCCTTTCCTGTGACCGTAACGAGGAATTGGCTG 1181
|||||||||| |||| |||||||||||||| | |||||||||||||| |||||||| |
Sbjct 998 TTGATAGAGCCTTAGTAATAGAAGCCTTCCTCGCATGTGACCGTAACGAAGAATTGGCAG 1057
Query 1182 CAAACTATCTACTAGAGCACTCAGCAGATTTTGAAGACTGA 1222
| ||||||||| | ||| |||||| ||||||||||||||||
Sbjct 1058 CTAACTATCTATTGGAGAACTCAGGAGATTTTGAAGACTGA 1098
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53592974715
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5