BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16210.1
Length=1034
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471818 jgi|Araly1|471818|fgenesh2_kg.1__1772__AT1G16210.1 1310 0.0
> Ahg471818 jgi|Araly1|471818|fgenesh2_kg.1__1772__AT1G16210.1
Length=917
Score = 1310 bits (709), Expect = 0.0
Identities = 844/908 (93%), Gaps = 13/908 (1%)
Strand=Plus/Plus
Query 73 CGAGAGAGATCAATTAACCCC-AGCGAATCGAATATGCCGAAGAAGATGGGTCTGAACAG 131
||||||||||||||| ||||| | | ||||||| ||||||||||||||||||||||||||
Sbjct 1 CGAGAGAGATCAATT-ACCCCTATCAAATCGAAGATGCCGAAGAAGATGGGTCTGAACAG 59
Query 132 CAAGGCGGAGGTCGCCAAATCTCGTAAGAACGCCGCGGAGGCTGAGCAGAAGGATCGTCA 191
||||||||||||||||||||| || |||||||| || |||||||||||||||||||||||
Sbjct 60 CAAGGCGGAGGTCGCCAAATCCCGGAAGAACGCGGCCGAGGCTGAGCAGAAGGATCGTCA 119
Query 192 GACTCGGGAGAAAGAGGAACAATACTGGCGCGAGGCGGAAGGTCCCAAATCCAAAGCGGT 251
|||||||||||| || |||||||||||||||||||| || |||||||||||||| ||||
Sbjct 120 GACTCGGGAGAAGGAAGAACAATACTGGCGCGAGGCCGAGGGTCCCAAATCCAAGGCGGC 179
Query 252 GAAGAAGCGAGAAGAGGAAGCGGAGAAGAAGGCAGAGACCGCCGCTAAGAAATTGGAGGC 311
||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||
Sbjct 180 CAAGAAGCGAGAAGAGGAGGCGGAGAAGAAGGCCGAGACCGCCGCTAAGAAAGCCGAGGC 239
Query 312 GAAGCGTCTGGCTGAGCAGGAGGAGAAAGAGTTGGAGAAGGCTTTGAAAAAGCCAGACAA 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAGCGTCTGGCTGAGCAGGAGGAGAAAGAGTTGGAGAAGGCTTTGAAAAAGCCAGACAA 299
Query 372 GAAGGCGAATCGCGTCACTGTGCCGGTTCCTAAGGTCACAGAGGCTGAGCTCATCCGAAG 431
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 300 GAAGGCGAATCGCGTCACTGTGCCGGTCCCTAAGGTCACAGAGGCTGAGCTCATACGAAG 359
Query 432 ACGCGAGGAAGATCAAGTGGCTCTGGCTAAGAAAGCAGAAGACTCTAAGAAGAAACAGAC 491
|||||||| || || ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 360 GCGCGAGGAGGAGCAGGTGGCGCTAGCTAAGAAAGCAGAAGACTCTAAGAAGAAACAGAC 419
Query 492 TCGCATGGCAGGGGAAGATGAGTATGAAAAGATGGTTCTGGTGACCAATACCAATCGCGA 551
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 420 TCGCATGGCAGGGGAAGATGAGTATGAAAAGATGGTACTGGTAACCAATACCAATCGCGA 479
Query 552 TGATTCTCTCATCGAGGCACATACCGTTGACGAGGCTCTTGCACGGATTACTGTGTCAGA 611
|||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||
Sbjct 480 TGATTCTCTCATCGAGGCACATACCGTTGACGAGGCGCTTGCTCGGATTACGGTGTCAGA 539
Query 612 TAACCTGCCCGTTGATCGACACCCGGAGAAGAGGCTCAAGGCTTCTTTTAAGGCATATGA 671
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 540 TAACCTGCCCGTTGATCGACACCCGGAGAAGAGGCTCAAGGCTTCATTTAAGGCCTATGA 599
Query 672 AGAAGTGGAACTTCCAAGGCTCAAGTCTGAGAAACCAGGTCTAACTCACACACAGTACAA 731
||||| |||||||||||||||||| |||||||||||||| |||||||| ||||||||
Sbjct 600 AGAAGCAGAACTTCCAAGGCTCAAGGAGGAGAAACCAGGTCTTACTCACACTCAGTACAA 659
Query 732 GGACTTGATATGGAAGATGTGGAAGAAATCACCAGATAATCCTCTTAACCAGGCTGCGGC 791
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GGACTTGATATGGAAGATGTGGAAGAAATCACCAGATAATCCTCTTAACCAGGCTGC--- 716
Query 792 TGCTGCTGCTAATGAGTGAAATGCAACCTGGAGTCAGAACAATGGAAGGTGTGATGAAGA 851
||||||||||||||||||||||||||| |||||||||||||| ||||||| |||||||||
Sbjct 717 TGCTGCTGCTAATGAGTGAAATGCAACTTGGAGTCAGAACAAGGGAAGGTATGATGAAGA 776
Query 852 AGGAGATGCATGGCAGAGAGCATGATGAAAATCTTTTGTTTCCCAGA-AAATATGTTTAG 910
||||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||| |
Sbjct 777 GGGAGATGCATGGCAGAGAGTATGATGCAAATCTTTTGTTTCCCAGAGAAA-ATGTTT-G 834
Query 911 TGAGAGATACTG-T-GT-AACATTGCTTATTGTTTCTTGTGCTTTGTGTATAAACACTAT 967
| | || ||| | | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 C-ATA-ATTCTGCTCGCCAACATTGCTTATTGTTTCTTGTGCTTTGTGTATAAACACTAT 892
Query 968 GATATAGC 975
||||||||
Sbjct 893 GATATAGC 900
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38466023253
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5