BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16220.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334901 jgi|Araly1|334901|fgenesh1_pg.C_scaffold_1001466 2200 0.0
Ahg477137 jgi|Araly1|477137|fgenesh2_kg.2__2267__AT1G79630.1 665 0.0
> Ahg334901 jgi|Araly1|334901|fgenesh1_pg.C_scaffold_1001466
Length=1476
Score = 2200 bits (1191), Expect = 0.0
Identities = 1389/1484 (94%), Gaps = 16/1484 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGTGTCATTCGAAAATTGATAAGACCACGAGGAAGGAAACCGGAGCTACAAGC 60
|||||| |||||||||||| ||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 1 ATGGGTCTGTGTCATTCGAGAATTGATAAGACCACCAGGAAGGTAACCGGAGCAACAAGC 60
Query 61 ACCGCCACTACTAC--T-GTAGAGAGACAGAGCTCCGGGAGGCTGCGGAGGCCTAGAGAC 117
|||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ACCGCCACTACTACTATGGTGGAGAGACAGAGCTCCGGGAGGCTGCCGAGGCCTAGAGAT 120
Query 118 TTATACAGCGGCGGCGAAATCAGTGAGATTCAACAAGTCGTGGGTCGGCTTGTTGGCAAT 177
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 121 TTATACAGCGGCGGCGAAATCAATGAGATTCAACAAGTCGTGGGTCGGCTTGTTGGCAAT 180
Query 178 GGTTCTAGTGAAATTGCTTGTCTTTACACACAACAAGGCAAAAAAGGAACTAACCAAGAC 237
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 181 GGTTCTAGTGAAATTGCATGCCTTTACACACAACAAGGCAAAAAAGGAACTAACCAAGAC 240
Query 238 GCCATGCTTGTCTGGGAGAATTTCTGTTCGAGAAGCGATACAGTGTTATGTGGTGTATTT 297
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 241 GCCATGCTTGTCTGGGAGAATTTTTGTTCAAGAAGCGATACAGTGTTATGTGGTGTATTC 300
Query 298 GATGGACATGGTCCATTTGGTCATATGGTTTCAAAGAGAGTCCGAGATATGTTACCTTTC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATGGACATGGTCCATTTGGTCATATGGTTTCAAAGAGAGTCCGAGATATGTTACCTTTC 360
Query 358 ACATTATCAACTCAACTGAAAACGACC-TCAGGAACAGAACAAAGCAGCTCCAAGAATGG 416
| ||||||||||||| ||||||||||| | ||||| ||||||||| |||||||||||||
Sbjct 361 ATATTATCAACTCAATTGAAAACGACCTTAAGGAA-GGAACAAAGCGGCTCCAAGAATGG 419
Query 417 CCTCAACTCTGCGCCTACTTGTGTAGATGAAGAGCAATGGTGTGAGTTACAG-CTATGTG 475
||| | ||| | |||||||||||||||||||||| |||| |||||||||| | | |
Sbjct 420 CCTTGAGTCT--G-CTACTTGTGTAGATGAAGAGCAGTGGTTTGAGTTACAGCCGA-ACG 475
Query 476 AGAAGGACGAAAAGCTA-TTCCCCGAGATGTATCTCCCTCTT-AAAAGGGCTTTGCTCAA 533
||||||||||||||||| || || |||||||||||||| || || |||||||||||||
Sbjct 476 AGAAGGACGAAAAGCTACTT-CCGGAGATGTATCTCCC-GTTGAAGCGGGCTTTGCTCAA 533
Query 534 GACTTGTCAACAGATGGATAAG-GAGTTAAAAATGCATCCAACCATCAATTGTTTCTGCA 592
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 534 GACTTGTCAACAGATGGAT-AGAGAGTTAAAAATGCATCCAACCATCAATTGTTTCTGCA 592
Query 593 GCGGAACAACTTCTGTCACTGTAATCAAACAGGGTAAGGATCTGGTGGTGGGAAATATTG 652
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 593 GCGGAACTACTTCTGTCACTGTGATCAAACAGGGTAAAGATCTGGTGGTGGGAAATATTG 652
Query 653 GTGACTCGAGAGCCGTTCTAGCCACAAGAGACCAAGACAATGCTTTGGTGGCTGTACAAT 712
||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||| ||
Sbjct 653 GTGACTCGAGAGCTGTTCTTGCCACAAGAGACCAAGACAATGCTTTGGTCGCTGTACCAT 712
Query 713 TGACCATAGACTTAAAACCTGATTTGCCAAGTGAATCAGCAAGAATCCATAGATGTAAAG 772
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 713 TGACCATAGACTTAAAACCCGATTTGCCAAGTGAATCAGCAAGAATCCATAAATGTAAAG 772
Query 773 GTAGAGTGTTTGCCTTACAAGACGAGCCTGAGGTTGCGCGTGTGTGGTTACCGAACAGCG 832
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 GTAGAGTGTTTGCCTTACAAGACGAGCCTGAGGTTGCGCGTGTGTGGTTACCGAACAGCG 832
Query 833 ATTCACCTGGTTTAGCAATGGCTCGAGCTTTTGGGGACTTCTGCCTTAAAGATTATGGTC 892
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 833 ATTCACCTGGTTTAGCAATGGCTCGAGCTTTTGGGGACTTCTGTCTTAAAGATTACGGGC 892
Query 893 TAATCTCTGTCCCGGATATCAACTACCATAGACTCACTGAAAGAGATCAGTATATTATTC 952
|||||||||| |||||||||||||||||| | ||||||||||||||||||| ||||||||
Sbjct 893 TAATCTCTGTTCCGGATATCAACTACCATCGCCTCACTGAAAGAGATCAGTTTATTATTC 952
Query 953 TAGCTACTGACGGGGTATGGGATGTTTTGTCGAACAAAGAAGCTGTTGATATTGTGGCTT 1012
|||| || || ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 953 TAGCCACAGATGGGGTATGGGATGTTTTGTCGAATAAAGAAGCTGTTGATATTGTGGCTT 1012
Query 1013 CAGCTCCTAGTCGAGATACTGCAGCTCGTGCTGTAGTCGACACGGCGGTTCGAGCATGGA 1072
|||||||||||||| | |||||||||||||||||||||||||| || |||||||||||||
Sbjct 1013 CAGCTCCTAGTCGAAACACTGCAGCTCGTGCTGTAGTCGACACAGCAGTTCGAGCATGGA 1072
Query 1073 GGCTTAAGTATCCTACTTCCAAGAATGATGATTGTGCTGTAGTATGTCTCTTTCTTGAAG 1132
|||| |||||||||||||||||||| || ||||||||||| |||||||||||||||||||
Sbjct 1073 GGCTCAAGTATCCTACTTCCAAGAACGACGATTGTGCTGTTGTATGTCTCTTTCTTGAAG 1132
Query 1133 ACACTTCAGCAGGAGGAACCGTGGAAGTTTCGGAAACCGTTAATCATTCTCATGAAGAGT 1192
|||||||||||| || | ||||||||||||| ||||| ||||||||||| ||| ||||||
Sbjct 1133 ACACTTCAGCAGCAGCATCCGTGGAAGTTTCAGAAACGGTTAATCATTCACATAAAGAGT 1192
Query 1193 CTACAGAGAGTGTCACCATAACATCAAGCAAAGATGCCGACAAGAAGGAAGAGGCTTCAA 1252
|||||||||||||||| || |||| |||||||||| | ||||||||||||||||||||||
Sbjct 1193 CTACAGAGAGTGTCACTATCACATTAAGCAAAGATTCTGACAAGAAGGAAGAGGCTTCAA 1252
Query 1253 CAGAAACAAATGAGACTGTACCGGTTTGGGAGATAAAAGAAGAAAAGACGCCTGAGAGTT 1312
||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1253 CAGAAACAAATGAGATTGTACCGGTTTGGGAGATAAAAGAAGAAAAGAAGCTTGAGAGTT 1312
Query 1313 GCAGGATTGAGTCCAAGAAGACAACACTCGCAGAGTGTATATCGGTGAAGGATGATGAAG 1372
||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||
Sbjct 1313 GCAGGATTGAGTCCAAGAAGACAACACTCGCCGAGTGTATATCGGTTAAGGATGAAGAAG 1372
Query 1373 AGTGGTCGGCGTTGGAAGGATTGACTAGAGTCAACAGTCTCTTGAGCATTCCTAGGTTCT 1432
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1373 AGTGGTCGGCATTGGAAGGATTGACTAGAGTCAACAGTCTCTTGAGCATTCCTAGGTTCT 1432
Query 1433 TCTCTGGCGAGCTAAGATCAAGTAGCTGGAGAAAATGGTTGTGA 1476
|||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TCTCCGGCGAGCTAAGATCAAGTAGCTGGAGAAAATGGTTGTGA 1476
> Ahg477137 jgi|Araly1|477137|fgenesh2_kg.2__2267__AT1G79630.1
Length=1876
Score = 665 bits (360), Expect = 0.0
Identities = 578/684 (85%), Gaps = 11/684 (2%)
Strand=Plus/Plus
Query 448 GAGCAATGGTGTGAGTTACAGCTATGTGAGAAGGACGA-AAAGCTATTCCCCGAGATGTA 506
|||||||||||||||||| | | | |||||| |||| || | || || ||||||||
Sbjct 740 GAGCAATGGTGTGAGTTAAATCCAAATGAGAACAACGATGAA-C--TT-CCGGAGATGTA 795
Query 507 TCTCCCTCTTAAA-AGGGCTTTGCTCAAGACTTGTCAACAGATGGATAAGGAGTTAAAAA 565
||| ||||||||| | || ||||| ||| ||||||| ||||| ||||| ||| | ||||
Sbjct 796 TCTGCCTCTTAAACA-TGCGTTGCTTAAGTCTTGTCAGCAGATAGATAAAGAGCTGAAAA 854
Query 566 TGCATCCAACCATCAATTGTTTCTGCAGCGGAACAACTTCTGTCACTGTAATCAAACAGG 625
|||||||||| || |||| |||||||| ||||||||||| |||||| | ||||| ||||
Sbjct 855 TGCATCCAACTATTGATTGCTTCTGCAGTGGAACAACTTCAGTCACTTTGATCAAGCAGG 914
Query 626 GTAAGGATCTGGTGGTGGGAAATATTGGTGACTCGAGAGCCGTTCTAGCCACAAGAGACC 685
|| ||||| ||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 915 GTGAGGATTTGGTGGTTGGAAATATTGGTGACTCGAGAGCCGTTCTTGCCACGAGAGACG 974
Query 686 AAGACAATGCTTTGGTGGCTGTACAATTGACCATAGACTTAAAACCTGATTTGCCAAGTG 745
|||||||||||||| | ||||||||||| || | ||||||||||| ||||||||| |||
Sbjct 975 AAGACAATGCTTTGCTCGCTGTACAATTAACTGTGGACTTAAAACCAGATTTGCCAGGTG 1034
Query 746 AATCAGCAAGAATCCATAGATGTAAAGGTAGAGTGTTTGCCTTACAAGACGAGCCTGAGG 805
||||||| |||||||| | || |||||| ||||| ||||| || ||||||||||||||||
Sbjct 1035 AATCAGCGAGAATCCAGAAATATAAAGGAAGAGTCTTTGCATTGCAAGACGAGCCTGAGG 1094
Query 806 TTGCGCGTGTGTGGTTACCGAACAGCGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 865
| || ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 TAGCTCGTGTATGGTTACCAAACAGCGATTCACCTGGTTTAGCAATGGCTCGAGCTTTTG 1154
Query 866 GGGACTTCTGCCTTAAAGATTATGG-TCTAATCTCTGTCCCGGATATCAACTACCATAGA 924
| || || || || |||||||| || | |||||||||| || ||||||||||||| |
Sbjct 1155 GAGATTTTTGTCTCAAAGATTACGGAT-TAATCTCTGTTCCAGATATCAACTACCGCCGC 1213
Query 925 CTCACTGAAAGAGATCAGTAT-ATTATTCTAGCTACTGACGGGGTATGGGATGTTTTGTC 983
|| || ||| |||| || | | |||||||| |||| |||||||||||||||||| |||||
Sbjct 1214 CTAACCGAACGAGACCAAT-TCATTATTCTTGCTAGTGACGGGGTATGGGATGTGTTGTC 1272
Query 984 GAACAAAGAAGCTGTTGATATTGTGGCTTCAGCTCCTAGTCGAGATACTGCAGCTCGTGC 1043
||| |||||||||||||||||||| |||||||||||||||||| | || || ||||| ||
Sbjct 1273 GAATAAAGAAGCTGTTGATATTGTTGCTTCAGCTCCTAGTCGAAACACAGCGGCTCGAGC 1332
Query 1044 TGTAGTCGACACGGCGGTTCGAGCATGGAGGCTTAAGTATCCTACTTCCAAGAATGATGA 1103
| |||| ||||| ||||||||| ||||||| | ||||| || ||||||||||| |||||
Sbjct 1333 TCTAGTGGACACAGCGGTTCGATCATGGAGAATCAAGTACCCAACTTCCAAGAACGATGA 1392
Query 1104 TTGTGCTGTAGTATGTCTCTTTCT 1127
||| ||||||| || ||||||||
Sbjct 1393 CTGTACTGTAGTCTGCCTCTTTCT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5