BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16250.1
Length=1824
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920528 jgi|Araly1|920528|scaffold_101809.1 1938 0.0
> Ahg920528 jgi|Araly1|920528|scaffold_101809.1
Length=1259
Score = 1938 bits (1049), Expect = 0.0
Identities = 1168/1224 (95%), Gaps = 13/1224 (1%)
Strand=Plus/Plus
Query 168 CAAGTTCGAGAAGGGGATCAG-AAGATACA--TTTACAATCTCTCGAGTACGATTCGGTT 224
|||| |||||||||||||| | | |||||| ||||||| ||||| | || |||| ||
Sbjct 32 CAAGCTCGAGAAGGGGATC-GCACGATACATTTTTACAA--TCTCGCG-AC--TTCGATT 85
Query 225 CATGGAATCAATCGAGCAGTCTATAATCCCAGGTTTGCCTGATGATTTGGCTTTGAGATG 284
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 CATGGAATCAATAGAGCAGTCTATAATCCCAGGTTTGCCTGATGATTTGGCTTTGAGATG 145
Query 285 CATAGCGAAGCTTTCTCATGGGTATCATGGAGTGCTCGAATGTGTTTCCAGAGGCTGGAG 344
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 146 CATAGCGAAGCTTTCTCATGGCTATCATGGAGTGCTCGAGTGTGTTTCCAGAGGCTGGAG 205
Query 345 AGATTTAGTTCGTGGTGCTGATTACTCGTGCTATAAAGCTAGAAATGGATGGTCAGGGAG 404
||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 206 AGATTTAGTTCGTAGCGTTGATTACTCTTGCTATAAAGCTAGAAATGGATGGTCAGGGAG 265
Query 405 CTGGTTGTTTGTGTTGACGGAACGTTCTAAGAATCAGTGGGTTGCTTATGATCCTGAAGC 464
|||||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||||
Sbjct 266 CTGGTTGTTTGTCTTGACAGAACGTTCTAAGAACCAATGGGTTGCTTATGATCCTCAAGC 325
Query 465 TGATCGATGGCATCCATTGCCTAGAACTAGAGCTGTTCAAGATGGTTGGCATCATTCTGG 524
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 326 TGATCGATGGCATCCTTTGCCTAGAACTAGGGCTGTTCAAGATGGTTGGCATCATTCTGG 385
Query 525 TTTTGCGTGTGTTTGTGTTTCCAATTGTCTTCTTGTGATTGGGGGTTGTTATGCGCCTTC 584
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 386 TTTTGCGTGTGTTTGCGTTTCGAATTGTCTTCTTGTGATTGGGGGTTGTTATGCGCCTTC 445
Query 585 GGTGTCATCGTTTCCTCATCAGAAGCCTGTTGTCACTAAAGATGTCATGCGGTTTGATCC 644
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TGTGTCATCGTTTCCTCATCAGAAGCCTGTTGTCACTAAAGATGTCATGCGGTTTGATCC 505
Query 645 GTTTAAGAAACAATGGAAAATGGTTGCTAGTATGCGAACACCACGGACTCACTTTGCTTG 704
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 GTTTAAGAAAGAATGGAAAATGGTTGCTAGTATGCGAACACCACGGACTCACTTTGCTTG 565
Query 705 TACTTCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGTAATTTAACTCATTCCAGGGG 764
||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 566 CACTGCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGCAATTTAACCCATTCCAGGGG 625
Query 765 AA-TCCCATCTGCTGAGGTTTATGATCCTGTCGCTGATAGGTGGGAGGAATTACCAGCAA 823
|| |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 626 AATTCCC-TCTGCTGAGGTTTATGATCCTGTGGCTGATAGATGGGAGGAATTACCAGCAA 684
Query 824 TGCCTAGACCACAGATGGACTGCTCGGGGTTATCGTACAGAGGCTGCTTTCATGTTTTAA 883
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 685 TGCCTAGACCACAGATGGACTGCTCGGGGTTATCGTACAGAGGTTGCTTTCATGTTCTGA 744
Query 884 GTGACCAGGTGGGATTTGCAGAGCAAAATTCATCTGAAGTTTTTAATCCACGAGACATGA 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 GTGACCAGGTGGGATTTGCAGAGCAAAATTCATCTGAAGTTTTTAATCCACGAGACATGA 804
Query 944 CTTGGTCCACTGTGGAGGATGTCTGGCCTTTCTCTAGAGCCATGCAGTTTGCTGTTCAGG 1003
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CTTGGTCCACTGTGGAGGATGTCTGGCCTTTCTCTAGAGCCATGCAGTTTGCTGTTCAGG 864
Query 1004 TGATGAAAAATGATCGGGTGTATACTATTGTAGATTGGGGAGAAAGCTTGATCAAGACTA 1063
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 865 TGATGAAAAATGATCGAGTGTACACTATTGTAGATTGGGGAGAAAGCTTGATCAAGACTA 924
Query 1064 GGGATACAGATGAAGGGGAATGGTACAATGTTGGTTCAGTTCCTTCTGTTGTTCTTCCTA 1123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 GGGATACAGATGAAGGGGAATGGTACAATGTTGGTTCAGTTCCTTCTGTTGTTCTTCCTA 984
Query 1124 ATCATCCGAGAGAGTTAGAAGCCTTCGGTTATGGGTTTGCAGCTCTAAGGAATGAACTCT 1183
||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||
Sbjct 985 ATCATCCGAGAGAGTTAGAGGCCTTTGGTTATGGGTTTGCAGCTCTAAGGGATGAGCTCT 1044
Query 1184 ATGTTATAGGAGGTAAGGTCCTTAAATGGGAAGAATCAGGGGCAGGGAGATTTGACATTG 1243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 ATGTTATAGGAGGTAAGGTCCTTAAATGGGAAGAATCAGGGGCAGGGAGATTTGACATTG 1104
Query 1244 TGAGATTGCCTGTTGTGAGGGTATGTAACCCTTTGGATAGACCTCTGAATTGGAGAGAGA 1303
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1105 TGAGATTGCCCGTTGTGAGGGTATGTAACCCTTTGGATAGGCCTCTGAATTGGAGAGAGA 1164
Query 1304 CCAAACCAATGTGCATTCCAGCCGGTGGGTCGATCATTGGTTGTGTATCCTTGGAAGAAT 1363
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1165 CCAAACCGATGTGCATTCCAGCCGGTGGGTCCATCATTGGTTGTGTATCCTTGGAAGAAT 1224
Query 1364 CTTCTCCCCCTTAA-CCAAGTGTG 1386
||||||| | |||| ||||| |||
Sbjct 1225 CTTCTCCGCTTTAAACCAAG-GTG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68486260510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5