BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16260.1
Length=2387
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312603 jgi|Araly1|312603|fgenesh1_pm.C_scaffold_1001383 1714 0.0
> Ahg312603 jgi|Araly1|312603|fgenesh1_pm.C_scaffold_1001383
Length=2208
Score = 1714 bits (928), Expect = 0.0
Identities = 1241/1392 (89%), Gaps = 22/1392 (2%)
Strand=Plus/Plus
Query 878 AGATAGCTATCAATGTTCGTGTCACA-ATGGTTACGAAGGAAATCCCTACATACCTGGCG 936
|||| | ||||| |||| |||| | | ||||||| ||||||||||| || |||||||| |
Sbjct 828 AGATGGATATCAGTGTTGGTGT-AAACATGGTTATGAAGGAAATCCTTATATACCTGGTG 886
Query 937 GATGCCAAGACATTGATGAATGCAGAGATCCACATCTA-AATAAATGTGGAAAGAGA-AA 994
|||| ||||||||||||||||||||| || || ||| | |||||||||||||||| | ||
Sbjct 887 GATGTCAAGACATTGATGAATGCAGATATTCATATC-ACAATAAATGTGGAAAGA-ACAA 944
Query 995 GTGTGTGAATGT-TCTCGGATCATAT-AGATGTGAGAAAACTTGGCCAGCCATTTTAAGT 1052
|||||||||||| ||| ||||||| | | |||||||||||||||||||||||||||||||
Sbjct 945 GTGTGTGAATGTGTCT-GGATCAT-TCAAATGTGAGAAAACTTGGCCAGCCATTTTAAGT 1002
Query 1053 GGAACTCTAAGCT-CTGGATTGTTGCTCCTGA-TCTTTGGTATGTGGTTGCTATGCAAGG 1110
||||| ||||| | ||||||||||||| | | || |||| | ||||| |||||||||||
Sbjct 1003 GGAACACTAAG-TACTGGATTGTTGCT-TTTAGTCGTTGGAACGTGGTGGCTATGCAAGG 1060
Query 1111 CTAATAGAAAGCGGAAAGT-AGCCAAGCAGAAGAGGAAGTTCTTCCAAA-GAAATGGAGG 1168
||||| |||||||||| | |||||||||||| || || ||||| |||| |||| |||||
Sbjct 1061 TTAATAAAAAGCGGAAA-TCAGCCAAGCAGAAAAGAAAATTCTT-CAAACGAAACGGAGG 1118
Query 1169 TTTGTTGTTGCAGCAACAAACATCCTTCCTTCACGGAAGTGTAAATAGAACCAAAGTTTT 1228
||||||||| || ||||| ||||| |||||||| || ||||| |||||||||||||| ||
Sbjct 1119 TTTGTTGTTACAACAACAGACATCGTTCCTTCAAGGCAGTGTCAATAGAACCAAAGTGTT 1178
Query 1229 CAGCTCCAATGACCTGGAGAATGCAACAGATAGATTCAATGCGAGCAGAATACTGGGGCA 1288
||||||| ||||||| | || ||||| || | |||||| | || ||||||||||| ||
Sbjct 1179 CAGCTCCGATGACCTTAACAAGGCAACTGACAAATTCAACCCTAGTAGAATACTGGGACA 1238
Query 1289 AGGCGGGCAGGGTACAGTTTATAAAGGAATGTTGGAAGATGGGATGATCGTCGCTGTCAA 1348
||| || || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1239 AGGAGGCCAAGGTACAGTTTATAAGGGAATGTTGGAAGATGGGATGATCGTCGCTGTCAA 1298
Query 1349 GAAGTCCAAAGCATTGAAAGAAGAGAATCTTGAGGAATTCATCAATGAGATCATCCTTTT 1408
||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |
Sbjct 1299 AAAGTCCAAAGCATTGGAAGAAAAGAATCTTGAGGAATTCATCAATGAGATAATCCTTCT 1358
Query 1409 GTCACAGATTAACCACCGAAATGTTGTCAAGATCTTAGGATGTTGTCTTGAGACAGAAGT 1468
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1359 GTCACAGATTAACCACCGAAATGTTGTCAAGATTTTAGGATGTTGTCTTGAGACAGAGGT 1418
Query 1469 ACCTATATTGGTGTATGAGTTCATTCCTAACCGTAACCTTTTCGATCATCTTCACAACCC 1528
|||| | || ||||||||||||||||| ||| | |||||||||||||||||||| |||||
Sbjct 1419 ACCTGTGTTAGTGTATGAGTTCATTCCAAACAGAAACCTTTTCGATCATCTTCAAAACCC 1478
Query 1529 ATCAGAGGATTTCCCAATGAGTTGGGAAGTCCGTCTCTGCATCGCCTGTGAAGTCGCCGA 1588
|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||
Sbjct 1479 ATCAGAGGATTTCCCAATGACTTGGGAAGTCCGTCTCTGCATCGCCTGCGAAGTCGCAGA 1538
Query 1589 TGCCCTCTCCTACCTGCATTCAGCCGTCTCTATCCCCATTTATCACAGAGATGTCAAGTC 1648
|||||||||||||||||||||||||| |||||| || ||||| ||||| |||||||||||
Sbjct 1539 TGCCCTCTCCTACCTGCATTCAGCCGCCTCTATACCAATTTACCACAGGGATGTCAAGTC 1598
Query 1649 AACAAATATCTTATTGGATGAAAAGCACCGTGCAAAAGTGTCAGATTTTGGAATCTCGAG 1708
||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||
Sbjct 1599 AACAAATATCTTATTGGATGAAAGGCACCGAGCAAAAGTGTCAGATTTTGGAATTTCGAG 1658
Query 1709 ATCTGTTGCTATAGATGATACTCACTTGACAACAATTGTACAAGGAACAATTGGATATGT 1768
||| |||||||||||||| ||||||||||||||| | || || |||||||||||||||||
Sbjct 1659 ATCAGTTGCTATAGATGACACTCACTTGACAACAGTAGTGCAGGGAACAATTGGATATGT 1718
Query 1769 AGACCCAGAGTACCTTCAGTCAAACCACTTCACAGGGAAGAGTGACGTCTACAGCTTTGG 1828
||||||||||||||||||||||| |||||||||||||||||| || |||||||||| |||
Sbjct 1719 AGACCCAGAGTACCTTCAGTCAAGCCACTTCACAGGGAAGAGCGATGTCTACAGCTATGG 1778
Query 1829 GGTTTTGCTCATTGAGCTCTTAACCGGAGAGAAACCTGTCTCCCTTCTGAGACGGCAAGA 1888
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1779 GGTTTTGCTCATTGAGCTCTTAACCGGAGAGAAACCTGTCTCCCTTCTGAGGCGCCAAGA 1838
Query 1889 AGTCCGAATGTTGGGTGCTTACTTCCTCGAAGCCATGAGAAATGACAGACTTCATGAAAT 1948
|||| | ||||||||||| |||||||||||||||||||||||||| || ||||| || ||
Sbjct 1839 AGTCAGGATGTTGGGTGCCTACTTCCTCGAAGCCATGAGAAATGATAGGCTTCACGAGAT 1898
Query 1949 TCTCGATGCTCGCATCAAGGAGGAATGTGATCGAGAAGAGGTCCTTGCAGTAGCCAAACT 2008
||| ||||||||||||||||||||||| ||| ||| ||||||||| |||||||||| ||
Sbjct 1899 TCTTGATGCTCGCATCAAGGAGGAATGCAATCAAGAGGAGGTCCTTTCAGTAGCCAACCT 1958
Query 2009 TGCAAGAAGGTGTTTGAGCTTGAACTCAGAACATCGCCCTACCATGAGAGACGTATTTAT 2068
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1959 GGCAAGAAGGTGTTTGAGCTTGAACTCAGAACATCGCCCTACCATGAGAGATGTTTTTAT 2018
Query 2069 TGAACTAGATAGGATGCAATCTAAGAGAAAAGGTACTCAAAGCC-AAGCACAGAATGGTG 2127
|||||| |||||||||||||| |||| |||||| | |||||||| || | ||||||| ||
Sbjct 2019 TGAACTGGATAGGATGCAATCCAAGAAAAAAGGCATTCAAAGCCGAA-CTCAGAATGATG 2077
Query 2128 AAGAGCATGCACACATCCAGATCGCAATGCCGGAGTCTATGTCACTTAGTTACTCTTCTC 2187
||||||||| ||||| | ||| |||||||| || ||||||||||| |||||||||||
Sbjct 2078 AAGAGCATGGGCACATTCGGATTGCAATGCCCGAATCTATGTCACTCCTTTACTCTTCTC 2137
Query 2188 CGAACATAGTCGTTGAAAACAGCTCATTCTCATTGGACA-CAAAACCACTAATGCCTCAC 2246
|| |||||||| |||||||||||||||||||| |||| | || ||||||| |||| ||||
Sbjct 2138 CGGACATAGTCATTGAAAACAGCTCATTCTCACTGGA-ATCAGAACCACTCATGCTTCAC 2196
Query 2247 AAGACACAGTGA 2258
||||||||||||
Sbjct 2197 AAGACACAGTGA 2208
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89931068445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5