BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16270.1
Length=3953
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471824 jgi|Araly1|471824|fgenesh2_kg.1__1778__AT1G16270.1 5823 0.0
Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1 1158 0.0
Ahg482471 jgi|Araly1|482471|fgenesh2_kg.4__1531__AT2G35050.1 516 6e-145
> Ahg471824 jgi|Araly1|471824|fgenesh2_kg.1__1778__AT1G16270.1
Length=3643
Score = 5823 bits (3153), Expect = 0.0
Identities = 3424/3556 (96%), Gaps = 13/3556 (0%)
Strand=Plus/Plus
Query 287 ATGGATAGAAACAGACCACCACATCCGTTCCAGCAACATGCTATGGAACCTGGATATGTG 346
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGATAGAAACAGACCACCACATCCGTTCCAGCAACATGCCATGGAACCTGGATATGTC 60
Query 347 AATGACTCTGTCCCACAAGGATTTACGCCTGATCAAACGGGTCTCTCGAATGCAAATGTC 406
|||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||| ||
Sbjct 61 AATGACTCTGTCCCTCAAGGATTTACCCCTGATCAAACGGGTATCTCGAATGCAAATCTC 120
Query 407 CGACCTAATCCTGCAGATGTTAAGCCGGGGCTTCATTACTCCATACAAACAGGAGAGGAA 466
|||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 121 CGACCTCATCCTGCAGATGTCAAGCCGGGGCTTCATTACTCCATACAAACAGGGGAGGAA 180
Query 467 TTTTCTCTTGAGTTTCTGCGTGATCGTGTCATTTCTCAAAGGTCTGCAAATCCCATTGCA 526
||||||||||||||||| || ||| | || ||||||||||||||||||||||||||| ||
Sbjct 181 TTTTCTCTTGAGTTTCTACGCGATAGGGTGATTTCTCAAAGGTCTGCAAATCCCATTTCA 240
Query 527 GCTGGAGATATCAATTATCCCACAGGTTATAACGGGCACGCAGGGTCTGAATTTGGTTCA 586
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGGAGATGTGAATTATCCCACAGGTTATAACGGGCACGCAGGGTCTGAATTTGGTTCA 300
Query 587 GATGTTTCCAGGATGAGCATGGTGGGAAATGGCATCAGGCAGTATGAGAGAACAAACCCC 646
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 GATGTTTCGAGGATGAGTATGGTGGGAAATGGCATGAGGCAGTATGAGAGAACAAACCCC 360
Query 647 -CCGGTTCACGAGTTTGGAAATAAACTCGGGCATATCCATTCAGCACCAGAAGCTTCATT 705
| || |||||||||||| |||||||| |||||||||||||||||||||||||||| |||
Sbjct 361 ACAGG-TCACGAGTTTGGGAATAAACTTGGGCATATCCATTCAGCACCAGAAGCTTTATT 419
Query 706 ATGTCAAGATAGAAGTTTAGGAAATTTCCATGGATATGCATCTTCTTCAGCCTCAGGTAG 765
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 420 ATGTCAAGATAGAAGTTTAGGAAATTTTCATGGATATGCATCTTCTTCAGCCTCAGGTAG 479
Query 766 TTTAACAGCAAAGGTTAAAGTCCTTTGTAGCTTTGGTGGGAAAATACTTCCACGTCCAGG 825
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 TTTAACAACAAAGGTTAAAGTCCTTTGTAGCTTTGGTGGGAAAATACTTCCACGTCCAGG 539
Query 826 TGATTCAAAGCTTAGATATGTTGGAGGTGAAACACACATTATTTCCATAAGAAAGGACAT 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGATTCAAAGCTTAGATATGTTGGAGGTGAAACACACATTATTTCCATAAGAAAGGACAT 599
Query 886 TTCTTGGCAGGAGCTCAGGCAAAAAGTTCTTGAAATCTACTATCGGACTCATGTTGTCAA 945
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 600 TTCTTGGCAGGAGCTCAGGCAAAAAGTTCTTGAAATCTACTACCGGACTCATGTTGTGAA 659
Query 946 GTATCAACTTCCTGGTGAAGATCTTGATGCCTTGGTGTCTGTATCATGTGACGAAGATCT 1005
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTATCAACTTCCTGGTGAAGATCTTGATGCCTTGGTGTCTGTATCATGTGACGAAGATCT 719
Query 1006 ACTGAATATGATGGAGGAGTATAATGAGATGGAAAACCGTGGGGGTTCGCAAAAGCTTAG 1065
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 ACTGAATATGATGGAGGAGTATAATGAGATGGAAAACCGTGGGGGTTCGCAAAAGCTTAG 779
Query 1066 AATGTTTCTGTTCTCTGTGAGTGATTTGGATGGTGCTCTTTTGGGGGTTAACAAAAGTGA 1125
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 780 AATGTTTCTGTTCTCTGTCAGTGATTTGGATGGTGCTCTTTTGGGGGTTAACAAAAATGA 839
Query 1126 TGTTGACTCTGAGTTCCAGTATGTTGTAGCTGTAAATGACATGGACCTTGGATCAAGAAG 1185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTTGACTCTGAGTTCCAGTATGTTGTAGCTGTAAATGACATGGACCTTGGATCAAGAAG 899
Query 1186 CAACTCAACCCTTAATGGACTGGACAGCTCTTCTGCAAACAATTTAGCTGAGCTGGATGT 1245
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 900 CAACTCAACCCTTAATGGATTGGACAGCTCTTCTGCAAACAATTTAGCTGAGCTGGATGT 959
Query 1246 CAGGAACACCGAGGGAATCAATGGTGTTGGCCCTTCGCAGTTAACAGGGATAGATTTTCA 1305
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 960 CAGGAACACCGAGGGAATCAATGGTGTTGGCCCTTCGCAGTTAACAGGGGTAGATTTCCA 1019
Query 1306 ACAATCCTCTATGCAGTATTCTGAGTCTGCTCCACCAACCTCCTTTGCTCAGTATCCTCA 1365
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 ACAATCCTCTATACAGTATTCTGAGTCTGCTCCACCAACCTCCTTTGCTCAGTATCCTCA 1079
Query 1366 ATCTATCCCACACAATGGTGCATTTCAGTTTCAGCAAGCTGTTCCCCCAAATGCTACTCT 1425
|||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATCTATTCCACATAATGCTGCATTTCAGTTTCAGCAAGCTGTTCCCCCAAATGCTACTCT 1139
Query 1426 TCAGTATGCCCCGTCCAATCCACCAAGTTCGTCTGTCCACTATCCTCAATCTATTCTACC 1485
||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1140 TCAGTATGCCCAGTCCAATCCACCAAGTTCGTCTATCCACTATCCTCAATCTATTTTACC 1199
Query 1486 AAATTCCACTCTCCAGTATCCACAATCGATCTCATCCAGCTCGTATGGATTATACCCACA 1545
|||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1200 AAATTCCACTCTTCAGTATCCACAATCGATCTCATCCGGCTCGTATGGAATATACCCACA 1259
Query 1546 ATATTATGGAGAAACCGAGCAATTTCCAATGCAGTATCATGATCACAATTCTTCTAATTA 1605
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1260 ATATTATGGAGAAAGGGAGCAATTTCCAATGCAGCATCATGATCACAATTCTTCTAATTA 1319
Query 1606 CTCTATTCCCATACCTTTCCCAGGGCAGCCATACCCTCACCCTGGCATCACACAGCAAAA 1665
|||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1320 CTCTATTCCCATGCCTTTCCAAGGTCAGCCATACCCTCACCCTGGCATCACACAGCAAAA 1379
Query 1666 CGCACCTGTTCAGGTAGAGGAGCCAAACATAAAACCTGAGACGAAAGTTCGTGATTATGT 1725
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 CGCACCAGTTCAGGTAGAGGAGCCAAACATAAAACCTGAGACGAAAGTTCGTGATTATGT 1439
Query 1726 GGAGCCTGAAAATCGTCATATTCTGGCAACTAATCACCAGAATCCCCCTCAAGCTGATGA 1785
|||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||||
Sbjct 1440 GGAGCCTGAAAATCGTCAAATTCTGGCAAATAATCACCAGAATCTTCCTCAAGCGGATGA 1499
Query 1786 TACTGAGGTTAAGAATCGGGAGCCATCAGTTGCAACAACTGTACCCAGCCAGGATGCTGC 1845
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1500 TACTGAGGTTAAGAATCGGGAGGCATTAGTTGCAACAACTGTACCCAGCCAGGATGCTGC 1559
Query 1846 ACATATGTTGCCCCCAAGAAGAGACACACGGCAGAACACTCCTGTGAAGCCTTCTACTTA 1905
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||
Sbjct 1560 ACATATGTTGCCCCCAAGAAGAGACACACGGCAGAACAATCCTGTGAAACCTTCTACCTA 1619
Query 1906 CCGTGATGCTGTTATAACTGAGCAGGTCCCAGTATCCGGTGAAGATGATCAGCTTTCAAC 1965
||||||||||||||| || |||||||| || |||||||||||||||||||||||||||||
Sbjct 1620 CCGTGATGCTGTTATTACCGAGCAGGTTCCTGTATCCGGTGAAGATGATCAGCTTTCAAC 1679
Query 1966 ATCAAGTGGTACCTGTGGTCTTGTTCATACCGACTCTGAGTCGAATCTAATTGATCTTGA 2025
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 ATCAAGTGGCACCAGTGGTCTTGTTCATACCGACTCTGAGTCGAATCTAATTGATCTTGA 1739
Query 2026 TTATCCAGAACCTTTACAGCCCACCCGGAGAGTATATCGTTCGGAGAGGATACCTCGTGA 2085
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1740 TTATCCAGAACCTTTACAGCCCACCCGGAGGGTATATCGTTCGGAGAGGATACCTCGTGA 1799
Query 2086 ACAGTTAGAAATGCTAAATCGCTTGTCCAAGTCTGATGACTCACTTGGTTCTCAGTTCTT 2145
|||||| |||||||| || |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1800 ACAGTTGGAAATGCTTAACCGCTTGTCAAAGTCTGATGACTCACTTGGCTCTCAGTTCTT 1859
Query 2146 AATGTCTCATCCACAAGCTAGCACTGGACAGCAAGAACCAGCAAAAGAAGCAGCAGGTAT 2205
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 1860 AATGTCTCATTCACAAGCTAACACTGGACAGCAAGAACCAGCAAAAGAAGCAGCGGGTAA 1919
Query 2206 ATCACATGAAGATTCACATATTGTAAATGATGTGGAAAACATCTCTGGAAATGTAGTGGC 2265
||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||| |||
Sbjct 1920 ATCACATGAAGATTCCCATATTGTTAATGACGTGGAAAACATCTCTGGAAAAGTAGGGGC 1979
Query 2266 ATCAAATGAAACCTTGGACAAAAGAACGGTC-TCTGGTGGAGGTATTGAGACGGAAGCTC 2324
||||||||||||| ||||||||| ||||||| | ||||||||||||||| | |||||||
Sbjct 1980 ATCAAATGAAACCGTGGACAAAATAACGGTCAGC-GGTGGAGGTATTGAGCCTGAAGCTC 2038
Query 2325 GTAACTTGAGCCATGTAGACACAGAAAGGAGTCATGATATCCCTGAAAAGCAAACTTCTT 2384
||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 2039 GTAACTTGAGCCATGTAGACACAGAAATGAGTCACGATACCCCTGAAAAGCAAACTTCTT 2098
Query 2385 CAGGTGTTCTTATTGATATCAATGACAGGTTCCCTCAGGACTTCCTTTCTGAAATATTCG 2444
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 2099 CAGGTGTTCTTATTGATATCAATGACCGGTTCCCTCAGGACTTCCTTTCTGAAATATTTG 2158
Query 2445 CAAAGGCACTCTCTGATGATATGCCGTCAGGTGCCAATCCATATCAGCATGATGGAGCTG 2504
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2159 CAAAGGCACTCTCTGATGATATGCCGCCAGGTGCCAATCCATATCAGCATGATGGAGCTG 2218
Query 2505 GTGTTAGCTTGAATGTAGAGAATCATGATCCTAAAAATTGGTCTTATTTTCGGAATCTGG 2564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 GTGTTAGCTTGAATGTAGAGAATCATGATCCTAAAAATTGGTCTTATTTTCGGAATCTGG 2278
Query 2565 CCGATGAACAGTTTAGCGATAGGGATGTTGCTTATATTGACCGAACCCCTGGCTTTCCAT 2624
|||| |||||||||||||| ||||||||| | ||||||||||||||||||||||||||||
Sbjct 2279 CCGAGGAACAGTTTAGCGAAAGGGATGTTACATATATTGACCGAACCCCTGGCTTTCCAT 2338
Query 2625 CTGACATGGAAGATGGTGGAGAAATTGCCAGATTGCATCAGGTTGCTCCGTTGACAGAAA 2684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2339 CTGACATGGAAGATGGTGGAGAAATTGCCAGATTGCATCAGGTTGCTCCGTTGACAGAAA 2398
Query 2685 ACCGTGTGGATCCTCAGATGAAGGTCACAGAGAGTGAGGAATTTGATGCTATGGTTGAGA 2744
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2399 ACCGTGTGGATCCTCAGATGAAGGTCACAGAGAGTGAGGAATTTGGTGCTATGGTTGAGA 2458
Query 2745 ATTTAAGGACCTCAGACTGTGAACAAGAGGATGAAAAGTCAGAAACAAGGAACGCTGGAC 2804
| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 2459 AGTTAAGGACCTCAGACTGTGAACATGAGGATGAAAAGACAGAAACAAGGAACGCTGGAC 2518
Query 2805 TTCCCCCAGTTGGCCCGTCTCTGGCAGATTACGACACGAGTGGCTTGCAGATCATTATGA 2864
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2519 TTCCCCCAGTTGGCCCGTCTCTGGCAGATTACGACACAAGTGGCTTGCAGATCATTATGA 2578
Query 2865 ATGACGATCTCGAGGAGCTAAAGGAGCTTGGTTCTGGCACATTCGGTACAGTGTATCATG 2924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2579 ATGACGATCTCGAGGAGCTAAAGGAGCTTGGTTCTGGCACATTCGGTACAGTGTATCATG 2638
Query 2925 GTAAATGGAGAGGATCAGATGTTGCCATCAAAAGGATAAAGAAGAGTTGCTTTGCTGGCC 2984
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2639 GGAAATGGAGAGGATCAGATGTTGCCATCAAAAGGATAAAGAAGAGTTGCTTTGCTGGCC 2698
Query 2985 GATCATCTGAGCAAGAAAGATTAACTGGTGAATTCTGGGGAGAAGCTGAAATTCTTTCAA 3044
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2699 GATCATCTGAGCAAGAAAGATTAACTGGTGAATTCTGGGGAGAAGCTGAAATTCTTTCAA 2758
Query 3045 AGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTTGTAAAAGATGGACCTGGTGCAA 3104
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2759 AGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTTGTAAAAGATGGCCCTGGCGCAA 2818
Query 3105 CATTGGCTACTGTAACAGAGTACATGGTTGATGGTTCTCTGAGACATGTTCTAGTCAGGA 3164
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2819 CATTGGCTACTGTAACAGAGTACATGGTTGATGGTTCTCTGAGACATGTTCTACTCAGGA 2878
Query 3165 AAGATAGACACCTGGATCGTCGTAAGAGACTAATCATTGCCATGGATGCTGCCTTTGGAA 3224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2879 AAGATAGACACCTGGATCGTCGTAAGAGACTAATCATTGCCATGGATGCTGCCTTTGGAA 2938
Query 3225 TGGAATACTTGCACGCCAAAAACATTGTTCACTTCGATTTGAAATGTGACAATTTACTTG 3284
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2939 TGGAATATTTGCACGCCAAAAACATTGTTCACTTCGATTTGAAATGTGACAATTTACTTG 2998
Query 3285 TGAACCTCAAAGATCCTTCTCGCCCAATCTGCAAGGTTGGTGATTTCGGTTTGTCGAAAA 3344
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2999 TGAACCTCAAAGATCCTTCTCGCCCAATCTGCAAGGTTGGTGATTTCGGTTTGTCAAAAA 3058
Query 3345 TCAAAAGAAATACATTGGTATCTGGTGGTGTACGCGGAACCTTACCATGGATGGCACCAG 3404
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 3059 TTAAAAGAAATACATTGGTATCTGGTGGTGTACGCGGAACCCTACCATGGATGGCACCAG 3118
Query 3405 AGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAGGTCGATGTCTTCTCTTTTGGTA 3464
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3119 AGCTTCTCAATGGTAGCAGCAGCAAAGTTTCAGAGAAGGTCGATGTCTTCTCTTTCGGTA 3178
Query 3465 TAGTCTTGTGGGAGATTCTAACCGGCGAGGAACCATATGCTAATATGCACTACGGTGCTA 3524
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3179 TAGTCTTGTGGGAGATTTTAACCGGGGAGGAACCATATGCTAATATGCACTACGGTGCTA 3238
Query 3525 TAATAGGTGGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACTCGG 3584
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 3239 TAATAGGTGGGATAGTGAATAACACACTGAGGCCGACCATACCGAGCTACTGTGACTCGG 3298
Query 3585 ACTGGCGAATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGCAAGGCCATCCTTCA 3644
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 3299 ACTGGCGAATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGCACGGCCATCCTTCA 3358
Query 3645 CGGAGATAGCTGGTCGGTTACGTGTTATGTCAACTGCAGCTACTTCGAACCAATCCAAAC 3704
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3359 CGGAGATAGCTGGTCGGTTACGTGTTATGTCAACTGCAGCTACTTCGAACCAATCCAAAC 3418
Query 3705 CACCAGCTCACAAGGCTTCAAAGTGAAACAGATTCGATATTTTATAGGTTTC-TCTTTAC 3763
||||||| |||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 3419 CACCAGCCCACAAGGCTTCAAAGTGAAACAGAGTCGATATTTTATAGGTTTTATCTTTAC 3478
Query 3764 TCTTTCCAAGTGTTTTGG------GG--TCAGGAGGGAGATATTTGTTGACCCTTTTCTC 3815
|||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 3479 TCTTTCCAAGTGTTTTGGACTTTTGGGGTCAGGAGGGAGATATTTGTTGACCCTTTTCTC 3538
Query 3816 CTTTCCCCCttttttt 3831
||||||| |||||||
Sbjct 3539 CTTTCCCTTTTTTTTT 3554
Score = 104 bits (56), Expect = 5e-21
Identities = 79/89 (89%), Gaps = 5/89 (6%)
Strand=Plus/Plus
Query 3868 TTTTTCTCGCTAGTGTTGAGAAGGAAATATGATAG--AT-T-A-ATGTAAGAACGTTTCT 3922
|||||||||| ||||| |||||||||||||||||| || | | | |||||||||||||
Sbjct 3555 TTTTTCTCGCCAGTGTGGAGAAGGAAATATGATAGATATGTAAGAACTAAGAACGTTTCT 3614
Query 3923 TACCAAATGTGAACAATCGAGATTCAAGA 3951
||||||||||||||||||||| |||||||
Sbjct 3615 TACCAAATGTGAACAATCGAGGTTCAAGA 3643
> Ahg477126 jgi|Araly1|477126|fgenesh2_kg.2__2256__AT1G79570.1
Length=4196
Score = 1158 bits (627), Expect = 0.0
Identities = 908/1042 (87%), Gaps = 25/1042 (2%)
Strand=Plus/Plus
Query 2699 CAGATGAAGGTCACAGAGAGTGAGGAATTTGATGCTATGGTTGAGAAT-TTAAGGAC-CT 2756
||||||||||| || |||||||||||||||| ||||||||| |||||| || ||||| |
Sbjct 2963 CAGATGAAGGTTACTGAGAGTGAGGAATTTGGTGCTATGGTGGAGAATCTT-AGGACGC- 3020
Query 2757 CAGACTGTGAA-CAAGAGGATGAAAAGTCAGAAACAAGGAACGCTG-GACTTCCCCCAGT 2814
| || | |||| ||| ||||||||||| ||||||||||| | |||| | ||||| ||| |
Sbjct 3021 CGGATTCTGAACCAA-AGGATGAAAAGACAGAAACAAGGCATGCTGCG-CTTCCTCCACT 3078
Query 2815 TGGCCCGTCTCTGGCAGATTACGAC-ACGAGTGGCTTGCAGATCATTATGAATGACGATC 2873
| | | ||| | || || ||| || ||||| ||||||||||||| |||||| ||||
Sbjct 3079 T-G---G-CTC-AG-AG-TT-TGACTAC-AGTGGTTTGCAGATCATTAAGAATGAAGATC 3128
Query 2874 TCGAGGAGCTAAAGGAGCTTGGTTCTGGCACATTCGGTACAGTGTATCATGGTAAATGGA 2933
| |||||| | ||||||||||||||||| || || || || ||||||||||| |||||||
Sbjct 3129 TTGAGGAGTTGAAGGAGCTTGGTTCTGGTACTTTTGGAACGGTGTATCATGGGAAATGGA 3188
Query 2934 GAGGATCAGATGTTGCCATCAAAAGGATAAAGAAGAGTTGCTTTGCTGGCCGATCATCTG 2993
|||||||||| || || ||||| |||||||||||||||||||||||||| || ||||| |
Sbjct 3189 GAGGATCAGACGTCGCTATCAAGAGGATAAAGAAGAGTTGCTTTGCTGGGCGGTCATCAG 3248
Query 2994 AGCAAGAAAGATTAACTGGTGAATTCTGGGGAGAAGCTGAAATTCTTTCAAAGCTTCATC 3053
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 3249 AGCAAGAGAGATTGACTGGTGAATTCTGGGGGGAAGCTGAAATTCTTTCAAAGCTTCATC 3308
Query 3054 ATCCAAATGTGGTTGCATTTTATGGTGTTGTAAAAGATGGACCTGGTGCAACATTGGCTA 3113
|||| || || || ||||||||||||||||||||||| || ||||| | || ||||| |
Sbjct 3309 ATCCGAACGTTGTAGCATTTTATGGTGTTGTAAAAGACGGGCCTGGAGGGACCTTGGCGA 3368
Query 3114 CTGTAACAGAGTACATGGTTGATGGTTCTCTGAGACATGTTCTAGTCAGGAAAGATAGAC 3173
|||| ||||||||||||||||||||||||||||| |||||||| ||| |||| || || |
Sbjct 3369 CTGTGACAGAGTACATGGTTGATGGTTCTCTGAGGCATGTTCTGGTCCGGAAGGACAGGC 3428
Query 3174 ACCTGGATCGTCGTAAGAGACTAATCATTGCCATGGATGCTGCCTTTGGAATGGAATACT 3233
| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 3429 ATCTTGATCGTCGTAAGAGACTAATCATTGCCATGGATGCTGCATTTGGAATGGAATATT 3488
Query 3234 TGCACGCCAAAAACATTGTTCACTTCGATTTGAAATGTGACAATTTACTTGTGAACCTCA 3293
| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 3489 TACACTCCAAAAACACTGTTCACTTCGATTTGAAATGTGACAATTTACTTGTGAACTTGA 3548
Query 3294 AAGATCCTTCTCGCCCAATCTGCAAGGTTGGTGA-TTTCGGTTTGTCGAAAATCAAAAGA 3352
|||||||||||||||||||||||||||||||||| ||| |||||||| |||||||| |||
Sbjct 3549 AAGATCCTTCTCGCCCAATCTGCAAGGTTGGTGACTTT-GGTTTGTCAAAAATCAAGAGA 3607
Query 3353 AATACATTGGTATCTGGTGGTGTACGCGGAACCTTACCATGGATGGCACCAGAGCTTCTC 3412
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 3608 AATACGTTGGTATCTGGTGGTGTACGTGGAACCTTACCATGGATGGCACCAGAGCTTCTA 3667
Query 3413 AATGGTAGCAGCAGCAAAGTTTCAGAGAAGGTCGATGTCTTCTCTTTTGGTATAGTCTTG 3472
|| || ||||||||||||||||| || ||||| ||||| |||||||| ||||| || |||
Sbjct 3668 AACGGGAGCAGCAGCAAAGTTTCTGAAAAGGTTGATGTTTTCTCTTTCGGTATCGTTTTG 3727
Query 3473 TGGGAGATTCTAACCGGCGAGGAACCATATGCTAATATGCACTACGGTGCTATAATAGGT 3532
||||||||||||||||| |||||||||||||| ||||||||||| || || |||||||||
Sbjct 3728 TGGGAGATTCTAACCGGAGAGGAACCATATGCGAATATGCACTATGGGGCAATAATAGGT 3787
Query 3533 GGGATAGTGAACAACACACTGAGGCCGACCATACCGAGCTACTGTGACTCGGACTGGCGA 3592
||||||||||||||||||||||| || ||||||||| ||| ||||||| || ||| ||
Sbjct 3788 GGGATAGTGAACAACACACTGAGACCAACCATACCGGGCTTCTGTGACGATGAATGGAGA 3847
Query 3593 ATATTAATGGAGGAGTGTTGGGCGCCTAACCCAACAGCAAGGCCATCCTTCACGGAGATA 3652
| | |||||||||| |||||||| || ||||||| ||||| ||||| ||||| ||||||
Sbjct 3848 ACACTAATGGAGGAATGTTGGGCACCAAACCCAATGGCAAGACCATCTTTCACAGAGATA 3907
Query 3653 GCTGGTCGGTTACGTGTTATGTCAACTGCAGCTACTTCGAAC-CAATCCAAACCACCAGC 3711
|||||||| ||||| || |||||| | ||||| ||||||| | |||||||| ||||||||
Sbjct 3908 GCTGGTCGCTTACGAGTAATGTCATCAGCAGCAACTTCGA-CTCAATCCAAGCCACCAGC 3966
Query 3712 TCACAAGGCTTC-AAAGTGAAA 3732
||||| |||||| ||| |||||
Sbjct 3967 TCACAGGGCTTCCAAA-TGAAA 3987
Score = 793 bits (429), Expect = 0.0
Identities = 1031/1308 (79%), Gaps = 95/1308 (7%)
Strand=Plus/Plus
Query 282 ttgtGATGGATAGAAAC-AGACCA-CCACATCCGTTCCAGCAACATGCTATGGAACCTGG 339
|||||||||||| || | ||| || | ||| | || |||| || | | |||||||||||
Sbjct 243 TTGTGATGGATA-AAGCTAGA-CATCAACAGCTTTTTCAGC-AC-T-CCATGGAACCTGG 297
Query 340 ATATGTG-AATGACTCTGTCCCACAAGGATTTACGCCTGATCAAAC-GGGTCTCTCGAAT 397
|||| | || || |||| || ||| ||||| |||||||||||| ||| | ||| |
Sbjct 298 TTATG-GAAACGAGGCTGTTCCTCAACCATTTATGCCTGATCAAACAGGG-AGCACGAGT 355
Query 398 GCAAATGTCCGA---CCTAA-TC--CT-G--CAGATGTTAAGCCGGGGCTTCATTACTCC 448
|| ||| | ||| ||||| || | | ||||||||||||| | || | | |||||
Sbjct 356 GCTAATATGCGACCTCCTAATTCTAATGGTTCAGATGTTAAGCCTGTGCATAACTACTCT 415
Query 449 ATACAAACAGGAGAGGAATTTTCTCTTGAGTTTCTGCGTGATCGTGTCATTTCTCAAAGG 508
||||||||||| |||||||| ||||||| |||| |||||||||| || ||| |||| |||
Sbjct 416 ATACAAACAGGTGAGGAATTCTCTCTTGCGTTTATGCGTGATCGGGTGATTCCTCAGAGG 475
Query 509 TCTGCAAATCCCATTGCAGCTG--GAGAT--A-TC-A--A-----T-TAT----CCCACA 550
||| | ||||||| || ||||| || || | || | | | ||| | | |
Sbjct 476 TCTTCCAATCCCAATGGAGCTGCCGACATGAATTCTACCACTGGTTATATGGAGCTTAGA 535
Query 551 GG-TT-ATAACGG----G-CACGCAGGGTCTGAATTTGGTTCAGATGTTTCCAGGATGAG 603
|| || || | || | ||| |||| ||||| | || ||||||||| || ||| | ||
Sbjct 536 GGTTTAAT-AGGGATAAGTCACACAGGATCTGAGTGTGCTTCAGATGTCTCAAGGTTCAG 594
Query 604 CA-TGGTGGGAAATGGCATCAGGCAGTA-TGAGAGAACAAACCCCCCGGTTCACGAGTTT 661
|| | |||| ||| |||| |||| | || |||||| || ||| | || |||||||||||
Sbjct 595 CACT-GTGGAAAACGGCACCAGGGA-TATTGAGAGGACCAACTCTTCGCTTCACGAGTTT 652
Query 662 GGAAATAAACTCGGGCATATCCATTCAGCACCAGAAGCTTCATTATGTCAAGATAGAAGT 721
||||||||||| || ||| |||| ||||||||| |||||| | || || ||||||| |||
Sbjct 653 GGAAATAAACTTGGTCATGTCCAGTCAGCACCACAAGCTTTAATAAGTAAAGATAGCAGT 712
Query 722 TTAGGAAATTTCCATGGATATGCATCTTCTTCAGCCTCAGGTAGTTTAACAGCAAAGGTT 781
|||||||||| |||||||| | ||||||||||||||||| ||| |||||||||||| |
Sbjct 713 GTAGGAAATTTACATGGATACACGTCTTCTTCAGCCTCAGGCAGTGTAACAGCAAAGG-T 771
Query 782 AAAG-TCCTTTGTAGCTTTGGTGGGAAAATACTTCCACGTCCAGGTGATTCAAAGCTTAG 840
||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 GAAGATCCTCTGCAGCTTTGGTGGGAAAATACTTCCACGTCCAGGTGATTCAAAGCTTAG 831
Query 841 ATATGTTGGAGGTGAAACACACATTATTTCCATAAGAAAGGACATTTCTTGGCAGGAGCT 900
|||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||
Sbjct 832 ATATGTTGGAGGTGAAACACACATTATTTCCATAAGAAAGGATATATCTTGGCCGGAGCT 891
Query 901 CAGGCAAAAAGTTCTTGAAATCTACTATCGGACTCATGTTGTCAAGTATCAACTTCCTGG 960
||||||||| | ||||||||||| || | || | ||| || |||||||| ||||||||
Sbjct 892 TAGGCAAAAAATCCTTGAAATCTATTACCAAACACGTGTCGTAAAGTATCAGCTTCCTGG 951
Query 961 TGAAGATCTTGA-TGCCTTGGTGTCTGTATCATGTGACGAAGATCTACTGAATATGATGG 1019
|||||||||||| | | |||||||||||||||| ||| |||||||| | ||||||| |||
Sbjct 952 TGAAGATCTTGACT-CGTTGGTGTCTGTATCATCTGAAGAAGATCTCCAGAATATGTTGG 1010
Query 1020 AGGAGTATAATGAGATGGAAAACCGTGGGGGTTCGCAAAAGCTTAGAATGTTTCTGTTCT 1079
| || |||||||||||||||||||||||||| || || |||||||| |||||||||||||
Sbjct 1011 AAGAATATAATGAGATGGAAAACCGTGGGGGATCTCAGAAGCTTAGGATGTTTCTGTTCT 1070
Query 1080 CTGTGAGTGATTTGGATGGTGCTCTTTTGGGGGTTAACAAAAGTGATGTTGACTCTGAGT 1139
| | |||||| |||||| ||||||||||||||||||||||| ||| | ||||||||||
Sbjct 1071 CCATCAGTGATATGGATGATGCTCTTTTGGGGGTTAACAAAAATGACGGCGACTCTGAGT 1130
Query 1140 TCCAGTATGTTGTAGCTGTAAATGACATGGACCTTGGATCAAGAA-GCAACTCAACCCTT 1198
| || ||||||||||||||||||| ||||||| |||||||| ||| | ||||||||||||
Sbjct 1131 TTCAATATGTTGTAGCTGTAAATGGCATGGACATTGGATCAGGAAAG-AACTCAACCCTT 1189
Query 1199 AATGGACTGGACAGCTCTTCTGCAAACAATTTAGCTGAGCTGGATGT-CAGGAACACCGA 1257
||| |||||||||||||| |||||||| |||||||| || ||||| ||| ||||| ||
Sbjct 1190 CTTGGGCTGGACAGCTCTTCAGCAAACAACTTAGCTGACCTTGATGTGCAG-AACACTGA 1248
Query 1258 GGGAATCAAT------G--G----TGTTG--GCCCTT--CGCAGTTAACAGG-GAT---A 1297
|||||||||| | | ||||| | || |||| | | ||| ||| |
Sbjct 1249 GGGAATCAATACCATTGCTGGAGATGTTGTTGGAGTTGGCGCA-TCA-CAGTTGATGGTA 1306
Query 1298 GATT--TTC-AACAATCCTCTATGCAGTATTCTGAGTCTGCTCCACCAACCTCCTTTGCT 1354
||| ||| ||||| | ||| | || | ||||||||| |||||||| ||| | ||
Sbjct 1307 GATGGCTTCCAACAAACGTCTGTTCAACAGTCTGAGTCTATTCCACCAAGCTCATCA-CT 1365
Query 1355 -CAGTATCCTCAATCTATCCCACACAATGGTGCATTTCAGTTTCAGCAAGCTGTTCCCCC 1413
|| ||| |||||||||| || | |||| ||||| |||||| |||||| ||||||| ||
Sbjct 1366 TCATTATTCTCAATCTATTCCTCTGAATGCTGCATATCAGTTGCAGCAATCTGTTCCGCC 1425
Query 1414 AAATGCTACTCTTCAGTATGCCCC-GTCCA--ATCCACCAAGTTCGTCTGTCCACTATCC 1470
|| | || ||||||| ||| |||| ||||| |||| | | |||| ||| | || |||||
Sbjct 1426 AAGTTCTGCTCTTCATTAT-CCCCAGTCCATTATCC-C-AGGTTCCTCTCTTCAGTATCC 1482
Query 1471 TCAATCTATT-CTACCAAATTCCACTC-TCCAGTATCCACAATCGATC 1516
||| ||||| | |||| ||| || || ||||||||||||| |||
Sbjct 1483 CCAACCTATTACG-CCAAGCTCCTCTTATC-AGTATCCACAATCCATC 1528
> Ahg482471 jgi|Araly1|482471|fgenesh2_kg.4__1531__AT2G35050.1
Length=4004
Score = 516 bits (279), Expect = 6e-145
Identities = 625/790 (79%), Gaps = 31/790 (4%)
Strand=Plus/Plus
Query 2850 TGCAGATCATTATGAATGACGATC-TCGAGGAGCTAAAGGAGCTT-GGTTCTGGCACATT 2907
||||| |||||| |||||||| | | || || || ||||| || |||||||| || ||
Sbjct 2888 TGCAGGTCATTAAAAATGACGA-CTTGGAAGAACTGAAGGA-ATTAGGTTCTGGTACCTT 2945
Query 2908 CGGTACAGTGTATCATGGTAAATGGAGAGGAT-CAGATGTTGCCATCAAAAGGATAAAGA 2966
|| || || ||||| || |||||||| || | |||||||||| ||||| | ||||| |
Sbjct 2946 TGGAACTGTTTATCACGGAAAATGGAG-GGGTACAGATGTTGCTATCAAGCGAATAAA-A 3003
Query 2967 A-GAGTTGCTTTGCT-GGCCGATCATCTGAGCAAGAAAGATT-AACTGGTGAATTCTGGG 3023
| ||| || ||| | || || |||||||| ||||| ||||| | || | || |||| ||
Sbjct 3004 AGGAGCTG-TTTTATCGGTCGTTCATCTGAACAAGAGAGATTGACCTCG-GAGTTCT-GG 3060
Query 3024 GA-GAAGCTGAAATTCTTTCAAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGTGTT 3082
| ||||| |||||||||||||||||||||||||||||||| | |||||||| || ||
Sbjct 3061 CATGAAGCAGAAATTCTTTCAAAGCTTCATCATCCAAATGTTATGGCATTTTACGGCGTA 3120
Query 3083 GTAAAAGATGGACCTGGTGCAACATTGGCTACTGTAACAGAGTACATGGTTGATGGTTCT 3142
|| ||||||||||| || | ||| || ||||| || |||||||||||||| |||| ||
Sbjct 3121 GTGAAAGATGGACCAGGAGGAACTTTAGCTACAGTGACAGAGTACATGGTCAATGGATCG 3180
Query 3143 CTGAGACATGTTCTAG-TCAGGAA-AGATAGACACCTGGATCGTCGTAAGAGACTAATCA 3200
|| || |||||||| | |||| || || | ||||| ||||| |||||| |||| |||
Sbjct 3181 CTCAGGCATGTTCT-GCTCAGCAACAG---G-CACCTTGATCGACGTAAGCGACTTTTCA 3235
Query 3201 TTGCCATGGATGCTGCCTTTGGAATGGAATACTTGCACGCCAAAAA-CATTGTTCACTTC 3259
|||| ||||| || || ||||| |||||||| |||||| | ||| | ||| || || |||
Sbjct 3236 TTGCAATGGACGCAGCTTTTGGGATGGAATATTTGCACTC-AAAGAGCATAGTGCATTTC 3294
Query 3260 GATTTGAAATGTGACAATTTACTTGTGAACCTCAAAG-ATCCTTCTCG-CCCAATCTGCA 3317
|||||||||||||| || || ||||| ||| | |||| |||| | || |||| | ||||
Sbjct 3295 GATTTGAAATGTGATAACTTGCTTGTCAACTT-AAAGGATCCCGCCCGTCCCA-TATGCA 3352
Query 3318 AGGTTGGTGATTTCGGTTTGTCGAAA-ATCAAAAGAAATACATTGGT-ATCTGGTGGTGT 3375
||||||||||||| ||| |||| ||| || |||||||| || ||||| | |||| |||||
Sbjct 3353 AGGTTGGTGATTTTGGTCTGTC-AAAGATAAAAAGAAACACTTTGGTCA-CTGGCGGTGT 3410
Query 3376 ACGCGGAACCTTACCATGGATGGCACCAGAGCTTCTCAATGGTAGCAGCAGCAAAGTTTC 3435
| | |||||| | || |||||||| || ||||| || | ||| |||||||||||||||||
Sbjct 3411 AAGGGGAACCCTCCCTTGGATGGCTCCCGAGCTACTTAGTGGCAGCAGCAGCAAAGTTTC 3470
Query 3436 AGAGAAGGTCGATGTCTTCTCTTTTGGTATAGTCTTGTGGGAGATTCTAACCGGCGAGGA 3495
|| ||||| ||||| |||||||| || || ||||||||||| ||||| ||||| |||||
Sbjct 3471 TGAAAAGGTTGATGTGTTCTCTTTCGGAATTGTCTTGTGGGAAATTCTTACCGGTGAGGA 3530
Query 3496 ACCATATGCTAATATGCACTACGGTGCTATAATAGGTGGGATAGTGAACAACACACTGAG 3555
||| || || |||||||| || || || ||||| || || ||||||||||| ||| ||||
Sbjct 3531 ACCCTACGCCAATATGCATTATGGGGCAATAATCGGAGGCATAGTGAACAATACATTGAG 3590
Query 3556 GCCGACCATACCGAGCTACTGTGACTCGGACTGGCGAATATTAATGGAGGAGTGTTGGGC 3615
|| ||| | || | |||||||||| | || ||| |||| | |||||| ||||||||||
Sbjct 3591 ACCAACCGTGCCAAACTACTGTGACCCAGAGTGGAGAATGCTGATGGAGCAGTGTTGGGC 3650
Query 3616 GCCTAACCCA 3625
||| |||||
Sbjct 3651 TCCTGACCCA 3660
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 149414031598
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5