BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16280.1
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471825 jgi|Araly1|471825|fgenesh2_kg.1__1779__AT1G16280.1 2289 0.0
> Ahg471825 jgi|Araly1|471825|fgenesh2_kg.1__1779__AT1G16280.1
Length=1464
Score = 2289 bits (1239), Expect = 0.0
Identities = 1401/1478 (95%), Gaps = 16/1478 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGAACCAACG-CCGGAGGAGGAAGGGGGAATCACCATCATGTCTAAATCCCGCAA 59
||||||||||| | | ||||||| |||||||||||||| |||||| |||||||||||||
Sbjct 1 ATGGAGGAACCGA-GATCGGAGGATGAAGGGGGAATCACAATCATGGCTAAATCCCGCAA 59
Query 60 AAATCCTAAAACCGTAGTA-AACATTCAGTCCCAGAAACTTGATTCGGACCAGAATACTC 118
|||||||||||||||||| || |||||||| |||||||||||||| ||||||||| |||
Sbjct 60 GAATCCTAAAACCGTAGTACAA-ATTCAGTCTCAGAAACTTGATTCCGACCAGAATGCTC 118
Query 119 CTCAATTTGAGAAATTCACTAATCCTAACCCTAGCTCCGACACCACATCCGCCACTAATT 178
||||||||||||||||||| ||||| |||||||| |||| | || ||||||
Sbjct 119 CTCAATTTGAGAAATTCACAAATCCCAACCCTAGTTCCG--------T-CG---CTAATT 166
Query 179 TCGAAGGGCTCGGATTAGCTGAGTGGGCAGTGGAAACGTGTAAAGAGCTTGGGATGCGTA 238
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 167 TCGAAGGGCTCGGATTAGCTGAGTGGGCAGTGGAAACGTGTAAAGAGCTTGGCATGCGTA 226
Query 239 AACCCACTCCAGTTCAAACTCACTGCGTGCCGAAGATATTAGCCGGACGAGACGTTTTAG 298
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 227 AACCGACTCCAGTTCAAACTCACTGCGTGCCGAAGATATTGGCCGGACGAGACGTTTTAG 286
Query 299 GGCTTGCTCAGACTGGTAGTGGTAAAACTGCTGCGTTTGCTCTACCTATACTTCACCGCC 358
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 287 GGCTTGCTCAGACTGGTAGTGGTAAAACGGCGGCGTTTGCTCTACCGATACTTCACCGCC 346
Query 359 TTGCTGAAGATCCTTATGGAGTCTTCGCGCTTGTAGTGACGCCGACTAGAGAGCTAGCGT 418
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 347 TCGCTGAAGATCCTTATGGGGTCTTCGCGCTTGTAGTGACGCCGACTAGAGAGCTAGCGT 406
Query 419 TCCAGCTCGCTGAGCAGTTTAAGGCTTTGGGTTCGTGTTTGAATTTGCGTTGCTCTGTAA 478
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 407 TCCAGCTCGCTGAGCAGTTTAAAGCTTTGGGTTCGTGTTTGAATTTGCGTTGCTCTGTAA 466
Query 479 TTGTGGGAGGAATGGATATGTTGACGCAAACTATGAGCTTGGTTTCACGACCTCATATCG 538
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 467 TTGTGGGAGGAATGGATATGTTGACGCAAACGAGGAGCTTGGTTTCACGACCTCATATCG 526
Query 539 TTATTACTACTCCTGGAAGAATCAAGGTTTTGCTTGAAAACAATCCTGATGTTCCTCCAG 598
|||||||||||||||| || || |||||||||||||||||||||||||||||||||||||
Sbjct 527 TTATTACTACTCCTGGGAGGATTAAGGTTTTGCTTGAAAACAATCCTGATGTTCCTCCAG 586
Query 599 TTTTCTCTAGAACCAAGTTCTTAGTGCTGGACGAGGCGGATAGAGTTCTTGATGTTGGTT 658
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 587 TTTTCTCTAGAACCAAGTTCTTAGTACTGGACGAGGCGGATAGAGTTCTTGATGTTGGTT 646
Query 659 TCCAAGACGAGTTACGCACAATCTTTCAGTGTCTGCCAAAGAGTAGACAAACATTGTTGT 718
| ||||||||||| || || |||||||||||||||||||||| |||||||||||||||||
Sbjct 647 TTCAAGACGAGTTGCGGACTATCTTTCAGTGTCTGCCAAAGACTAGACAAACATTGTTGT 706
Query 719 TCTCTGCTACCATGACTAGTAACTTACAGGCTTTGCTTGAACATTCTTCAAACAAAGCTT 778
|||||||||| ||||||| |||||||||| | ||||| ||||||||||||||||||||||
Sbjct 707 TCTCTGCTACGATGACTACTAACTTACAGACATTGCTCGAACATTCTTCAAACAAAGCTT 766
Query 779 ATTTCTATGAAGCCTATGAAGGGTTAAAGACTGTTGACACTCTTACGCAGCAGTTCATTT 838
||||||||||||| |||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 767 ATTTCTATGAAGCATATGAAGGCTTTAAGACTGTTGACACTCTTACGCAGCAGTTCATTT 826
Query 839 TCGAAGACAAAGATGCCAAAGAGCTGTATCTTGTGCACATCCTCTCGCAAATGGAAGACA 898
|||||||||||||||| ||||| || |||||||||||||| || |||||||||||||| |
Sbjct 827 TCGAAGACAAAGATGCTAAAGAACTATATCTTGTGCACATACTGTCGCAAATGGAAGATA 886
Query 899 AGGGCATTCGATCAGCCATGATTTTTGTCTCCACTTGCAGAACATGTCAAAGGTTAAGTC 958
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 AGGGCATTCGATCAGCCATGATTTTTGTCTCCACTTGCAGAACATGTCAAAGGTTAAGTC 946
Query 959 TTATGCTTGACGAGCTTGAAGTGGAAAATATAGCTATGCATTCTCTGAATTCTCAGTCTA 1018
|||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 947 TTATGCTTGAAGAGCTTGAAGTGGAAAACGTAGCTATGCATTCTCTGAATTCTCAGTCTA 1006
Query 1019 TGCGACTATCTGCACTAAGTAAATTCAAGTCTGGGAAAGTACCGATATTGCTTGCGACTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 TGCGACTATCTGCACTAAGTAAATTCAAGTCTGGGAAAGTACCGATATTGCTTGCGACTG 1066
Query 1079 ATGTTGCCAGCCGTGGATTGGACATTCCTACTGTTGACCTTGTCATCAATTATGACATTC 1138
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1067 ATGTTGCCAGCCGTGGATTGGATATTCCTACTGTCGACCTTGTCATCAATTATGACATTC 1126
Query 1139 CGAGAGATCCTAGGGATTATGTTCATCGTGTTGGACGTACAGCTAGAGCTGGTAGAGGAG 1198
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 CGAGAAATCCGAGGGATTATGTTCATCGTGTTGGACGTACAGCTAGAGCTGGTAGAGGAG 1186
Query 1199 GACTGGCTGTAAGCATTATCACTGAGACCGATGTGAAACTTATCCATAAAATAGAAGAGG 1258
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1187 GACTGGCTGTAAGCATTATCACTGAGACCGATGTGAAACTTATCCATAAGATAGAAGAGG 1246
Query 1259 AAGTTGGAAAAAAGATGGAACCATACAACAAAAAAGTAATCACTGACAGTTTAGAAGTCA 1318
|||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||
Sbjct 1247 AAGTTGGAAAAAAGATGGAACCGTACAACAAAAAAATAATCACTGACAGTGTAGAAGTCA 1306
Query 1319 CAAAGGTCTCAAAAGCCAAAAGAGTGGCAATGATGAAGATGCTAGATAATGGATTCGAAG 1378
|||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 1307 CAAAGGTCTCAAAAGCCAAAAGGGTGGCAATGATGAGGATGCTAGATAATGGATTCGAAG 1366
Query 1379 ACAAGGTTAAAGACCGGAGGAAATTGAAACGGAAAACACTTGCGGATAAAGGGTTGCTTA 1438
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1367 ACAAGGTTAAAGACCGGAGGAAATTGAAACGTAAAACACTTGCGGATAAAGGGTTGCTTA 1426
Query 1439 AGAAACGGGGCAAAAGGCAGAAATCAACAGAAAATTGA 1476
|||||||| |||||||||||||||||||||||||||||
Sbjct 1427 AGAAACGGAGCAAAAGGCAGAAATCAACAGAAAATTGA 1464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55230855250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5