BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16290.1
Length=1445
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312606 jgi|Araly1|312606|fgenesh1_pm.C_scaffold_1001386 2206 0.0
> Ahg312606 jgi|Araly1|312606|fgenesh1_pm.C_scaffold_1001386
Length=1377
Score = 2206 bits (1194), Expect = 0.0
Identities = 1319/1378 (96%), Gaps = 13/1378 (1%)
Strand=Plus/Plus
Query 1 ATGGCCAACAGTTTCACGTTCTGGAATGATTGTGTTGAGCCAGAGGATTTAGAAGAAATG 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCCAACAGTTTCACGTTCTGGAATGATTGTGTTGAGCCAGAGGATTTAGAAGAAATG 60
Query 61 TGGATGGATCCTGCGGTCAGTGCTGAATGGATTGATGTTGGAGAGACTAAAGGCCAGAAG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGATGGATCCTGCGGTCAGTGCTGAATGGATTGATGTTGGAGAGACTAAAGGCCAGAAG 120
Query 121 GTTCACCTCTCAAGGGATCCTGATGGTCAGCCTTATCTTACACAGACCGAGATGAGGGCT 180
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GTTCACCTTTCAAGGGATCCTGATGGACAGCCTTATCTTACACAGACCGAGATGAGGGCT 180
Query 181 GTTTCTGATATAACTGTCCGGAGGCATTTTGATTCCATCTTGGATTCGGAAATGATATGT 240
||| ||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 181 GTTGCTGATATTACTGTCCGGAGGCATTTTGATTCGATCTTGGATTTGGAAATGATATGC 240
Query 241 GCAATTGCTGAGCTTGAAAGTGACCGAAAGCCTCTCATTATGCGGTACAGCAAAAAGACC 300
|||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||
Sbjct 241 GCAATTGCTGAGCTTGAAAGTGACCGCAAGCCTCTCATTATGAGGTACAACAAAAAGACC 300
Query 301 AAAGAAACTGGCCTTGGAATTTTACAAGTTTTCGAAAAGACAGCAGCATGGTTGGCTGGG 360
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 301 AAAGAAACTGGCCTAGGAATTTTACAAGTTTTCGAAAAGACAGCAGCGTGGTTGGCTGGG 360
Query 361 GGCCAAGGCTATCAGGCATATAATGTAGATGACAATCCTGATCTTCTTCACAAGCCCTTT 420
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 361 GGCCAGGGCTATCAGGCATATAATGTGGATGACAATCCTGATCTTCTTCACAAGCCCTTT 420
Query 421 ATAAATGTGTACTTTGGGGCAGCTTACCTGAAATGGTTAACAGACTATCAGAATAACCAG 480
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 ATAAATGTATATTTTGGGGCAGCTTACCTGAAATGGTTAACAGACTATCAGAATAACCAG 480
Query 481 AGAAGTGAAGAGTTTGTTGTCAGAGCATACAATGGTGGGACAAAAAAGGCGACTCACAAG 540
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 481 AGAAGTGAAGAGTTTGTTGTCAGAGCATATAATGGTGGGACAAAAAAGGCGACTCACAAG 540
Query 541 TCGACATTGCCATATTGGAAACGATACCTTGCAGTGAAAGAAAGTCTCCCTTCAAGAAAA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCGACATTGCCATATTGGAAACGATACCTTGCAGTGAAAGAAAGTCTCCCTTCAAGAAAA 600
Query 601 CATGGCGATGCTGGCCCTTCAAGCTTTCGTCCTACGAATCCCGCTTCCCCAGGCTCAAAC 660
|||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 601 CATGTCGATGCTGGCCCTTCAAGCTTTCATCCTACGAATCCCGCTTCACCAGGCTCAAAC 660
Query 661 ACCGATTTCACATACTGGGACTCTCGAGCTTCCCCCGAAGATATGGAAGATATGTGGAAT 720
||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 661 ACCAATTTCACATACTGGGACTCTCGGGCTTCCCCTGAAGATATGGAAGATATGTGGAAT 720
Query 721 CAGTCTGAAATATGTAAAGAGTGGACAAAATCTAAAGAAGAAAGGGGAAAGGTTCGTTTT 780
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CATTCTGAAGTATGTAAAGAGTGGACAAAATCTAAAGAAGAAAGGGGAAAGGTTCGTTTT 780
Query 781 TCACAAGATGGTGAAAAGAGGCCTTACCTTTCTCGAGGGGAACTTAAGGCTGTTGCAGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TCACAAGATGGTGAAAAGAGGCCTTACCTTTCTCGAGGGGAACTTAAGGCTGTTGCAGAA 840
Query 841 ATAATTGTTTCAAAGTACTTCAGCACGAAAGGAATTAGAGTTCCTCTTGTTTGTGCGATT 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 ATAATTGTTTCGAAGTACTTCAGCACGAAAGGAATTAGAGTTCCTCTTGTTTGTGCGATT 900
Query 901 GCTGATACTGTGTGCATGCGGTTTGTGAACGGTATTAAGAAACATGTAGGAATACTCGGA 960
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 901 GCTGATACTGTGTGCATGCGGTTTGTGAACGGTACTAAGAAACATGTAGGTATACTCGGA 960
Query 961 GTGGACTACTCAACCGCTTCATGGTTATACTCGGAGCTAGGATACCGAGCATACAGAGTC 1020
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GTGGACTACTCAACCGCTTCCTGGTTATACTCGGAGCTAGGATACCGTGCATACAGAGTC 1020
Query 1021 GATTCAGCAGACGATCTAACCAAACCATTTATCTCTATGTACTTTGGTGTAGCCTATTTG 1080
||||||||||||||| | |||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1021 GATTCAGCAGACGATTTGACCAAACCATTTGTCTCTATGTACTTCGGTGTAGCCTATTTG 1080
Query 1081 GTTTGGTTATCGGAATATGAAGGAAGTCAAAGAAGTAATCAATTCATTGTCCAAGCATAT 1140
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1081 GTTTGGTTATCGGAATATGAAGGAAGTCAGAGAAGTAATCAATTCATTGTCCAAGCTTAT 1140
Query 1141 ATGAAAGGTCCTGACCACGTCGATCTTGAGGAATCATGTCCACTCTGGCTCAAGTTCGAG 1200
|| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1141 ATCAACGGTCCTGACCACGTCGATCTTGAGGCATCATGTCCACTCTGGCTCAAGTTCGAG 1200
Query 1201 CAAGCTCTGAGTTACTATGAAGAGTCCAAGAGG-------G-ATTCAGGAAGCTGCGTTA 1252
|||||||||||||||||||||| ||| |||||| | |||||||||||||| |||
Sbjct 1201 CAAGCTCTGAGTTACTATGAAGTGTCGAAGAGGTATCATTGGATTCAGGAAGCTGCATTA 1260
Query 1253 TCCTATGAGACAACGTTTATTAAGACACATATGATGAAGATTAACGGATTTAGCTTTGGT 1312
||||||||||||||||||||||| |||||||||||||||||||| | |||||||||||||
Sbjct 1261 TCCTATGAGACAACGTTTATTAATACACATATGATGAAGATTAAAGAATTTAGCTTTGGT 1320
Query 1313 TTCGTGTGT-TT-GTTATCACAAGATTTCCTTTCTG-G-TTTCTGTTTTTGACTTTAA 1366
||||||||| || || |||||||||||||||||||| | |||||||||||| ||||||
Sbjct 1321 TTCGTGTGTGTTTGT-ATCACAAGATTTCCTTTCTGCGGTTTCTGTTTTTGTCTTTAA 1377
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54050057655
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5