BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16300.1
Length=1602
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471827 jgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1 2224 0.0
Ahg477121 jgi|Araly1|477121|fgenesh2_kg.2__2251__AT1G79530.1 1303 0.0
> Ahg471827 jgi|Araly1|471827|fgenesh2_kg.1__1781__AT1G16300.1
Length=1368
Score = 2224 bits (1204), Expect = 0.0
Identities = 1321/1377 (96%), Gaps = 10/1377 (1%)
Strand=Plus/Plus
Query 12 ttttttACTCAAAC-GAACATTTTCGTGGCTCCAGAGCTACACTCAAAAGCCATTCAGCG 70
||||| |||| ||| |||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1 TTTTTAACTC-AACAGAACATTTTCTTGGCTCCACAGCTACACTCAAAAGCCATTCAGCG 59
Query 71 GAAGGGGTTAGGATTTTTGGCGGCGAGATCTCTCTGTTTCTGGTAGCTTAGCAATGGCCT 130
| | ||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 60 G-A------AGG-TTTTTGGCGGCGAGATCTCTCTGTTTCTGGTAGCTTAGCTATGGCCT 111
Query 131 TATCTTCTCTCCTCAGATCTGCCGCCACTTCCGCCGCAGCTCCTCGTGTCGAGCTTTATC 190
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 112 TCTCTTCTCTCCTCAGATCCGCCGCCACTTCCGCCGCAGCTCCTCGTGTTGAGCTTTATC 171
Query 191 CATCGTCATCGTACAATCATTCTCAGGTCACGTCAAGTCTTGGATTCAGTCATAGCCTGA 250
|||||||||||||| ||||||||||||||||||||||||||||||||| ||| | ||||
Sbjct 172 CATCGTCATCGTACGATCATTCTCAGGTCACGTCAAGTCTTGGATTCACTCACAATCTGA 231
Query 251 CCTCGTCTAGATTTTCTGGTGCTGCAGTTTCAACCGGAAAATACAATGCGAAGAGGGTTC 310
|||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||
Sbjct 232 CCTCGTCTAGATTTTCTGGTGCTGCAGTTTCAACTGGAAAATGCAATGCGAAGAGCGTTC 291
Query 311 AACCCATCAAGGCCACAGCTACGGAAGCACCTCCTGCTGTTCATAGGTCAAGGAGCAGTG 370
|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 292 AACCCATCAAGGCCACAGCTACAGAAGCACCTCCTATTGTTCATAGGTCAAGGAGCAGTG 351
Query 371 GAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATTGGAAGATTGGTCCTCCGCATCG 430
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 352 GAAAGACAAAGGTTGGGATCAACGGTTTTGGTCGAATTGGAAGGTTGGTCCTCCGCATCG 411
Query 431 CAACCTTTAGGGATGATATCGAGGTTGTAGCAGTCAACGATCCATTCATAGATGCCAAGT 490
| ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 412 CTACCTTTAGGGATGATATTGAGGTTGTAGCAGTCAACGATCCATTCATAGACGCCAAGT 471
Query 491 ACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAAATTACAAAGGAACTATCAATG 550
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 472 ACATGGCTTACATGTTCAAGTATGATTCTACTCATGGAAATTACAAAGGAACCATCAATG 531
Query 551 TAATTGATGATTCAACTTTGGAGATCAATGGAAAACAAGTCAAAGTTGTCAGCAAGAGAG 610
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 532 TAATTGATGATTCTACTTTGGAGATCAATGGAAAACAGGTCAAAGTTGTCAGCAAGAGAG 591
Query 611 ACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGAGTATGTTGTTGAGTCTTCAGGGG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 592 ACCCAGCTGAAATCCCGTGGGCTGATCTTGGAGCTGAGTATGTTGTTGAGTCTTCGGGGG 651
Query 671 TATTCACCACCGTTGGACAAGCTTCATCACATTTGAAGGGTGGTGCTAAGAAGGTCATCA 730
||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||
Sbjct 652 TATTCACCACCGTTGGACAAGCTTCATCACATTTGAAGGGTGGCGCCAAGAAAGTCATCA 711
Query 731 TTTCTGCACCTTCAGCGGACGCGCCCATGTTTGTTGTTGGAGTAAATGAAAAGACATACC 790
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 712 TTTCTGCACCTTCAGCGGACGCGCCCATGTTCGTTGTTGGAGTAAATGAGAAGACATACC 771
Query 791 TGCCTAACATGGATATAGTCTCCAATGCAAGTTGTACCACCAATTGTCTTGCACCTCTTG 850
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 772 AACCTAACATGGATATAGTCTCCAATGCAAGCTGTACCACCAATTGCCTTGCACCTCTTG 831
Query 851 CCAAGGTGGTGCATGAGGAATTTGGTATTCTTGAAGGCTTGATGACAACAGTCCACGCGA 910
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 832 CCAAGGTGGTGCATGAGGAATTTGGAATTCTTGAAGGCTTGATGACAACAGTCCACGCGA 891
Query 911 CCACAGCTACTCAGAAAACTGTGGACGGCCCATCAATGAAGGACTGGAGAGGAGGCCGAG 970
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 892 CCACAGCTACTCAGAAAACTGTGGACGGCCCATCAATGAAGGACTGGAGAGGAGGCAGAG 951
Query 971 GCGCAAGTCAAAACATCATTCCTAGCTCAACAGGCGCTGCAAAGGCTGTTGGTAAGGTCC 1030
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 952 GCGCTAGTCAAAACATCATTCCTAGCTCAACCGGCGCTGCAAAGGCTGTTGGTAAGGTCC 1011
Query 1031 TTCCGGAACTCAATGGAAAACTAACAGGAATGGCCTTCCGTGTCCCAACACCAAATGTCT 1090
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 1012 TTCCGGAACTCAATGGAAAACTAACGGGAATGGCCTTCCGTGTCCCAACACCAAATGTTT 1071
Query 1091 CTGTTGTGGATTTAACTTGTCGACTTGAGAAGGATGCATCGTATGAAGACGTCAAGGCAG 1150
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1072 CTGTTGTGGATTTAACTTGTCGACTTGAGAAGGATGCATCTTATGAAGACGTTAAGGCAG 1131
Query 1151 CCATAAAGTTTGCATCAGAAGGACCACTTAGGGGCATTCTTGGATATACAGAAGAAGATG 1210
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 CCATAAAGTTTGCATCAGAAGGACCACTTAGGGGCATTCTTGGATATACAGAAGAAGATG 1191
Query 1211 TCGTCTCTAATGATTTTCTTGGAGATTCAAGGTCAAGTATCTTTGATGCTAATGCTGGGA 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 TCGTCTCTAATGATTTTCTTGGAGATTCAAGGTCAAGTATCTTTGATGCTAATGCTGGGA 1251
Query 1271 TTGGATTAAGCAAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACA 1330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 TTGGATTAAGCAAGTCCTTCATGAAACTTGTCTCCTGGTATGACAACGAATGGGGTTACA 1311
Query 1331 GCAACCGAGTCCTTGACCTGATAGAACACATGGCGTTAGTTGCAGCCAGCCGCTAAA 1387
| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 1312 GTAACCGAGTCCTTGACCTGATAGAGCACATGGCGTTAGTTGCAGCCAGCTGCTAAA 1368
> Ahg477121 jgi|Araly1|477121|fgenesh2_kg.2__2251__AT1G79530.1
Length=1749
Score = 1303 bits (705), Expect = 0.0
Identities = 1101/1289 (85%), Gaps = 40/1289 (3%)
Strand=Plus/Plus
Query 122 CAATGGCCTTATCTTCTCTCCTCAGATCTGCCGCC-ACTTC-C-GCCGCAGCTCCTCGTG 178
|||||||||| |||||||||||||||||||||||| || | | | || ||||||||
Sbjct 143 CAATGGCCTTCTCTTCTCTCCTCAGATCTGCCGCCGCCTCCACGGTTGCCGCTCCTCG-C 201
Query 179 TC-GAGCTTTATC-CATCGTCATCGTAC-AATCATTCTCAGGTCACGTCAAGTCTTGGAT 235
| || |||| || | ||| | ||| | |||||||| |||| | |||||||||||||
Sbjct 202 CCTGA-CTTTTTCTCGTCGCCGGCGT-CTGATCATTCTAAGGTGTCCTCAAGTCTTGGAT 259
Query 236 TCAGTCATAGCCTG-ACCTCGTCTAGA--TT-TTCT-GG-T-GCTGCAGTTTCA-ACCGG 287
| |||| | |||| | | | || ||| || |||| || | || | || | | | |
Sbjct 260 TTAGTCGCAACCTGAAAC-CATCGAGATTTTCTTCTGGGATATCTTC-GTCT-ATA-C-A 314
Query 288 AAAATACAATGCGAAG-AGGGTTCAACCCATCAAGGCCACAGCTAC-GGAA-GCACCTCC 344
|||| |||||| ||| || || ||||||||||||||||| ||||| | || || | | |
Sbjct 315 AAAAGGCAATGC-AAGAAGTGTGCAACCCATCAAGGCCACGGCTACAGAAATGC-CAT-C 371
Query 345 TGCTGTTC-ATAGGTCAAGGAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTC 403
||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 372 TGCACTTCGA-AGGTCAAGTAGCAGTGGAAAGACAAAGGTTGGGATCAACGGTTTTGGTC 430
Query 404 GAATTGGAAGATTGGTCCTCCGCATCGCAACCTTTAGGGATGATATCGAGGTTGTAGCAG 463
| |||||||| ||||||||||||| ||||| | |||||||| || || ||||||||||
Sbjct 431 GGATTGGAAGGCTGGTCCTCCGCATTGCAACATCCAGGGATGACATTGATGTTGTAGCAG 490
Query 464 TCAACGATCCATTCATAGATGCCAAGTACATGGCTTACATGTTCAAGTATGATTCTACTC 523
| || || |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 491 TGAATGACCCATTCATTGATGCCAAGTACATGGCTTACATGTTGAAGTATGATTCTACTC 550
Query 524 ATGGAAATTACAAAGGAA-CTATCAATGTAATTGATGATTCAACTTTGGAGATCAA-TGG 581
||||||||| ||| |||| | |||||||| ||||||||||| |||||||||||||| ||
Sbjct 551 ATGGAAATTTCAAGGGAAGC-ATCAATGTCATTGATGATTCTACTTTGGAGATCAACGGG 609
Query 582 AAAACAAGTCAAAGTTGTCAGCAAGAGAGACCCAGCTGAAATCCCGTGGGCTGATCTTGG 641
| | | ||||| ||||||||||||||||| |||||||| || || ||||||||||||||
Sbjct 610 CAGA-AGGTCAATGTTGTCAGCAAGAGAGATCCAGCTGAGATACCATGGGCTGATCTTGG 668
Query 642 AGCTGAGTATGTTGTTGAGTCTTCAGGGGTATTCACCACCGTTGGAC-AA-GCTTCATCA 699
|||||| ||||||||||||||||| || |||||||||||| || | | || ||| ||||
Sbjct 669 AGCTGATTATGTTGTTGAGTCTTCCGGTGTATTCACCACC-TT-GTCAAAGGCTGCATCC 726
Query 700 CATTTGAAGGGTGGTGCTAAGAAGGTCATCATTTCTGCACCTTCAGCGGACGCGCCCATG 759
||||||||||| ||||| ||||| || || |||||||| |||||||| ||||| || |||
Sbjct 727 CATTTGAAGGGCGGTGCCAAGAAAGTTATAATTTCTGCCCCTTCAGCTGACGCACCTATG 786
Query 760 TTTGTTGTTGGAGTAAATGAAAAGACATACCTGCCTAACATGGATATAGTCTCCAATGCA 819
||||||||||| |||||||| |||||||||| || ||||||||||||||||||||||||
Sbjct 787 TTTGTTGTTGGGGTAAATGAGAAGACATACCAACCAAACATGGATATAGTCTCCAATGCA 846
Query 820 AGTTGTACCACCAATTGTCTTGCACCTCTTGCCAAGGTGGTGCATGAGGAATTTGGTATT 879
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 847 AGTTGTACCACCAATTGTCTTGCCCCTCTTGCGAAGGTGGTGCATGAGGAATTTGGTATT 906
Query 880 CTTGAAGGCTTGATGACAACAGTCCACGCGACCACAGCTACTCAGAAAACTGTGGACGGC 939
|||||||||||||||||||| |||||||| || |||||||||||||||||||| || ||
Sbjct 907 CTTGAAGGCTTGATGACAACTGTCCACGCAACTACAGCTACTCAGAAAACTGTTGATGGG 966
Query 940 CCATCAATGAAGGACTGGAGAGGAGGCCGAGGCGCAAGTCAAAACATCATTCCTAGCTCA 999
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 967 CCATCAATGAAGGACTGGAGAGGAGGTCGGGGCGCTAGTCAAAACATCATTCCTAGCTCA 1026
Query 1000 ACAGGCGCTGCAAAGGCTGTTGGTAAGGTCCTTCCGGAACTCAATGGAAAACTAACAGGA 1059
|| ||||| || |||||||| ||||| || ||||| ||||| ||||| ||||| || |||
Sbjct 1027 ACCGGCGCCGCTAAGGCTGTAGGTAAAGTTCTTCCAGAACTGAATGGGAAACTTACGGGA 1086
Query 1060 ATGGCCTTCCGTGTCCCAACACCAAATGTCTCTGTTGTGGATTTAACTTGTCGACTTGAG 1119
|||||||||||||| |||||| | ||||| ||||| ||||||||||||||||||||||||
Sbjct 1087 ATGGCCTTCCGTGTACCAACATCGAATGTTTCTGTGGTGGATTTAACTTGTCGACTTGAG 1146
Query 1120 AAGGATGCATCGTATGAAGACGTCAAGGCAGCCATAAAGTTTGCATCAGAAGGACCACTT 1179
|||| ||| || |||||||| || || |||||||| |||| ||| ||||||||||| |||
Sbjct 1147 AAGGGTGCCTCTTATGAAGATGTTAAAGCAGCCATTAAGTATGCCTCAGAAGGACCTCTT 1206
Query 1180 AGGGGCATTCTTGGATATACAGAAGAAGATGTCGTCTCTAATGATTTTCTT-GGAGATTC 1238
| |||||||| || |||||||| |||||||||||||| || ||||| | | || |||||
Sbjct 1207 AAAGGCATTCTCGGGTATACAGATGAAGATGTCGTCTCCAACGATTT-CGTCGGTGATTC 1265
Query 1239 AAGGTCAAGTATCTTTGATGCTAATGCTGGGATTGGATTAAGCAAGTCCTTCATGAAACT 1298
|||||| ||||||||||| || ||||||||||||||||| ||||||||||| |||||||
Sbjct 1266 AAGGTCCAGTATCTTTGACGCCAATGCTGGGATTGGATTGAGCAAGTCCTTTGTGAAACT 1325
Query 1299 TGTCTCCTGGTATGACAACGAATGGGGTTACAGCAACCGAGTCCTTGACCTGATAGAACA 1358
|||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 1326 TGTCTCTTGGTACGACAACGAATGGGGTTACAGCAACCGAGTTCTTGACCTTATAGAGCA 1385
Query 1359 CATGGCGTTAGTTGCAGCCAGCCGCTAAA 1387
|||||| || || |||||||||| |||||
Sbjct 1386 CATGGCTTTGGTAGCAGCCAGCCACTAAA 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60030226120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5