BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16310.1
Length=1399
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471828 jgi|Araly1|471828|fgenesh2_kg.1__1782__AT1G16310.1 2065 0.0
Ahg923514 jgi|Araly1|923514|scaffold_104795.1 353 2e-96
Ahg914444 jgi|Araly1|914444|Al_scaffold_0001_4698 322 5e-87
Ahg946829 jgi|Araly1|946829|scaffold_703058.1 207 1e-52
Ahg931249 jgi|Araly1|931249|scaffold_303706.1 130 3e-29
Ahg923513 jgi|Araly1|923513|scaffold_104794.1 110 4e-23
> Ahg471828 jgi|Araly1|471828|fgenesh2_kg.1__1782__AT1G16310.1
Length=1351
Score = 2065 bits (1118), Expect = 0.0
Identities = 1250/1311 (95%), Gaps = 20/1311 (2%)
Strand=Plus/Plus
Query 3 ATATGCCGCTTAA---CTCCTATATTTTCTTTCTCTTTCTCACAACTTCCCCTAGAAACA 59
|||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1 ATATGCGGCTTAACTCCTCCTATATTTTCTTTCTCTTTCTCACAACTT-CCCTAGAAACA 59
Query 60 CTTTTTTCGGAATTCGAACGCACAGCGATCGGATAATGGCGACGGAGCATATAACT-CGT 118
||||||||| |||||||||||| || |||||||||||||||||||||||||| | | |||
Sbjct 60 CTTTTTTCGTAATTCGAACGCAGAGAGATCGGATAATGGCGACGGAGCATAT-AGTCCGT 118
Query 119 ACGGGAGATGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTGAA 178
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 119 ACGAAAGACGAATACAATGTCGAGCTTTTACCTAGTGACGACGATGCGCCGCCGCTTCAA 178
Query 179 TCGTCTTGGCGTCTCAACCTCGACGCTTTTCAA-------C-T---C-CCTTCTTCCACC 226
||||||||||||||||||||||| ||||||||| | | | ||||||||||||
Sbjct 179 TCGTCTTGGCGTCTCAACCTCGAGGCTTTTCAACTTCCTTCTTCACCGCCTTCTTCCACC 238
Query 227 GGTGGCCGTCACGACGGACGTACTCGCTTTTCTCGCTATTTTCGTACTCCAAGAAAGGAA 286
|||||||||||||||| ||||||||||||||||| ||||| |||||||| |||||||||
Sbjct 239 GGTGGCCGTCACGACGCTCGTACTCGCTTTTCTCGATATTTCCGTACTCCCAGAAAGGAA 298
Query 287 CGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATG 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCAATGAGATG 358
Query 347 GAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAATGAAGAAG 406
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 359 GAGACTATCCACGAAACTGGTTTTGCATCTGGTGTTCCTACTGAGGAAGAAATGAAGAAG 418
Query 407 CTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGGTGCTTTTT 466
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 419 CTTGCAAAGAGTGAGAGGCTGGCAGTTCACATATCGAACGCAACAAATTTGGTGCTTTTT 478
Query 467 GTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATGGCTGTGATTGCTTCAACTTTG 526
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 479 GTGGCAAAAGTTTATGCCTCTATGGAAAGTAGATCCATGGCTGTGATTGCTTCAACTTTG 538
Query 527 GACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGGTTTACAGCTAATGCCATGAGA 586
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 GACTCTCTCTTGGATCTCTTGTCTGGTTTTATTCTCTGGTTTACAGCTAATGCCATGAGA 598
Query 587 AAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGTATCATT 646
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 599 AAACCAAACCAGTTTCACTATCCTATCGGAAAGCGCCGGATGCAACCTGTGGGCATCATT 658
Query 647 GTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGGCAA 706
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 659 GTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTACTAGAGTCAGGAAGGCAA 718
Query 707 CTAGTTGCCAAGAGTGGTATTCATATGAATAGCACAGAGGAGAAATGGATGATTGGTATC 766
||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||
Sbjct 719 CTAGTTGCCAAGAGTGGTATTCACATGAATAGCACAGAGGAGAAATGGATGATCGGGATC 778
Query 767 ATGGTCTCTGTCACCATCGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAAC 826
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 ATGGTCTCTGTCACCATTGTGAAGTTTCTTCTAATGCTTTATTGCAGAGGATTTCAGAAC 838
Query 827 GAAATCGTTAGGGCCTATGCTCAAGATCACCTCTTTGACGTCGTCACTAATTCAATCGGC 886
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 839 GAAATCGTTAGGGCCTATGCTCAGGATCACCTCTTTGACGTTGTCACTAATTCAATCGGC 898
Query 887 TTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCC-TACCGGTGCTAT 945
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 899 TTAGCAACAGCTGTCTTGGCCGTCAAATTCTACTGGTGGATTGATCCCT-CCGGTGCTAT 957
Query 946 ACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACCGTACTAGAGAACGTCCATTC 1005
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 958 ACTTATTGCTTTGTACACCATAGCAACATGGGCAAGAACGGTACTAGAGAACGTCCATTC 1017
Query 1006 ACTGATCGGCCGCTCTGCGCCACCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAA 1065
|||||||| |||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 1018 GCTGATCGGACGCTCTGCCCCGCCAGATTTCTTGGCGAAACTGACATTCTTGATATGGAA 1077
Query 1066 CCATCACGAACAAATTAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTA 1125
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1078 CCATCACGAACAAATCAAGCATATTGACACAGTAAGGGCTTACACTTTTGGGTCACACTA 1137
Query 1126 CTTTGTGGAAGTGGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACAT 1185
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 CTTTGTGGAAGTAGACATTGTTTTGCCAGAGGACATGAGACTACAAGAGGCTCACAACAT 1197
Query 1186 CGGAGAGACTCTTCAGGAAAAGCTCGAGCAGCTCGCTGAAGTAGAACGAGCTTTTGTCCA 1245
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1198 CGGAGAGACTCTTCAGGAGAAGCTCGAGCAGCTTGCTGAAGTAGAACGAGCTTTTGTCCA 1257
Query 1246 CATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAGATTTT 1296
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1258 CATAGACTTTGAGTTCACTCATCGTCCTGAACACAAGTGTAACTAGATTTT 1308
> Ahg923514 jgi|Araly1|923514|scaffold_104795.1
Length=290
Score = 353 bits (191), Expect = 2e-96
Identities = 262/295 (89%), Gaps = 10/295 (3%)
Strand=Plus/Plus
Query 323 CTCCTCGAGGGTTTCAATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTT 382
|||||||| |||||| ||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1 CTCCTCGAAGGTTTCGATGAGATGGAGACTATCCATGAAACTGGTTTGGCATCTGGTGTT 60
Query 383 CCAACTGAGGAAGAAATGAAGAAGCTTGCAAAGAGTGAGAGACTT-GCGGTTCACATATC 441
||||||||| |||||||||| |||||||||| |||||||||| || || ||||||||| |
Sbjct 61 CCAACTGAGAAAGAAATGAACAAGCTTGCAATGAGTGAGAGA-TTGGCAGTTCACATA-C 118
Query 442 -GAACGCAACAAATTTGGTGCTTTTTGTAG-CAAAAGTTTATGCCTCTATGGAGAGTAGA 499
||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 119 TAAACACAACAAATTTGGTGCTTTTTGT-GTCAAAAGTTTATGCCTCTATGGAGAGTAGA 177
Query 500 TCCATGGCTGTGATTGCTTCAACTTT-GGACTCTCTTTTGGATCTCTTGTCTGGTTTTAT 558
||||||| |||||||||||||||||| || |||||| || |||| |||||||||||||||
Sbjct 178 TCCATGGTTGTGATTGCTTCAACTTTAGG-CTCTCTCTTAGATCACTTGTCTGGTTTTAT 236
Query 559 CCTCTGGTTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTCACTATCCTATC 613
|| |||||||| |||||| |||||||| | | || | ||||||||||||| |||
Sbjct 237 TCTTTGGTTTACGGCTAATACCATGAGATA-CTAATC-AGTTTCACTATCCAATC 289
> Ahg914444 jgi|Araly1|914444|Al_scaffold_0001_4698
Length=387
Score = 322 bits (174), Expect = 5e-87
Identities = 200/213 (94%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 279 GAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCA 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 GAAAGGAACGTAGAGTCTCTGAATACTACAAGAAGCAAGAGAGGCTCCTCGAGGGTTTCA 124
Query 339 ATGAGATGGAGACTATCCACGAAAATGGTTTTGCATCTGGTGTTCCAACTGAGGAAGAAA 398
|||||||||||||||| | |||| | ||||||||||||||||||||||| |||||||||
Sbjct 125 ATGAGATGGAGACTATAAATGAAACTTGTTTTGCATCTGGTGTTCCAACTAAGGAAGAAA 184
Query 399 TGAAGAAGCTTGCAAAGAGTGAGAGACTTGCGGTTCACATATCGAACGCAACAAATTTGG 458
| |||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 185 TAAAGAAGCTTGCAAAGAGTGAGAGACTGGCAGTTCACATATCAAACGCAACAAATTTGG 244
Query 459 TGCTTTTTGTAGCAAAAGTTTATGCCTCTATGG 491
|||||||||| ||||| ||||||||||| ||||
Sbjct 245 TGCTTTTTGTGGCAAAGGTTTATGCCTCCATGG 277
> Ahg946829 jgi|Araly1|946829|scaffold_703058.1
Length=383
Score = 207 bits (112), Expect = 1e-52
Identities = 142/157 (90%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 446 GCAACAAATTTGGTGCTTTTTGTAGCAAAAGTTTATGCCTCTATGGAGAGTAGATCCATG 505
|||||| || ||||||||||| | ||||| ||||||| ||||||||||||||||||||||
Sbjct 12 GCAACATATATGGTGCTTTTTATGGCAAACGTTTATGACTCTATGGAGAGTAGATCCATG 71
Query 506 GCTGTGATTGCTTCAACTTTGGACTCTCTTTTGGATCTCTTGTCTGGTTTTATCCTCTGG 565
|||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||
Sbjct 72 GCTGTGATTGCTTCAAATTTGGACTCTCTCGTGGATCTCTTGTCTGGTTTTATTGTCTGG 131
Query 566 TTTACAGCTAATGCCATGAGAAAACCAAACCAGTTTC 602
|||||| |||||| |||||||||||||||| |||||
Sbjct 132 TTTACATCTAATGAAATGAGAAAACCAAACCGGTTTC 168
> Ahg931249 jgi|Araly1|931249|scaffold_303706.1
Length=425
Score = 130 bits (70), Expect = 3e-29
Identities = 70/70 (100%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 641 ATCATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGA 700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 52 ATCATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGA 111
Query 701 AGGCAACTAG 710
||||||||||
Sbjct 112 AGGCAACTAG 121
> Ahg923513 jgi|Araly1|923513|scaffold_104794.1
Length=298
Score = 110 bits (59), Expect = 4e-23
Identities = 63/65 (97%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 644 ATTGTGTTTGCTTCCGTGATGGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGG 703
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 273 ATTGTGTTTGTTTCCGTGATAGCAACTCTTGGACTGCAAGTTTTGCTAGAGTCAGGAAGG 214
Query 704 CAACT 708
|||||
Sbjct 213 CAACT 209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52297906385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5