BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16330.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312610 jgi|Araly1|312610|fgenesh1_pm.C_scaffold_1001390 1140 0.0
> Ahg312610 jgi|Araly1|312610|fgenesh1_pm.C_scaffold_1001390
Length=1497
Score = 1140 bits (617), Expect = 0.0
Identities = 751/812 (92%), Gaps = 23/812 (3%)
Strand=Plus/Plus
Query 666 AGCCAGTAAAGCCAGCAACCAAGCTGTCCCGCAGCTAAGCAGTGCCGGAACCTATACTTG 725
||| ||||||| |||||| |||||||||| ||||| || |||||||||||||||||||
Sbjct 291 AGCTAGTAAAGTCAGCAATAAAGCTGTCCCACAGCTGAGGAGTGCCGGAACCTATACTTT 350
Query 726 GAAAACTCGAACAAGTGTCGGCTCTATACAATCGGACGGCAATAAG-CAGAGTAAGAATA 784
||||||||| ||||||||| ||||||||| ||||||| |||| || |||||||||||||
Sbjct 351 GAAAACTCGGACAAGTGTCAGCTCTATACCATCGGACCGCAA-CAGACAGAGTAAGAATA 409
Query 785 ACGTCCGTTTCGTAAGGAAATCTATCAAGATCCAGACAACTGTAAAGACTTCGCTACAAA 844
|||| | | | |||| |||||||||||||||||||| ||||||||||
Sbjct 410 ACGT-C----C-----G-----TATC---ATCCAGACAACTGTAAAGACGTCGCTACAAA 451
Query 845 ACCGTAGCTCTCTTAAGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAA 904
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 452 ACCGTAGTTCTCTTACGAAGCCCCCAGTGGGTAGAAGTAAATCAAGATCTATTTCTTCAA 511
Query 905 TCCCTTCTTCTG---CAGTTGCCTCAACACTGTCACTTCCGGAAAAGGTTGAGACAAAAT 961
|||||||||||| |||||||| ||| |||||||||||| |||||||||| |||||||
Sbjct 512 TCCCTTCTTCTGAAATAGTTGCCTTAACGCTGTCACTTCCGAAAAAGGTTGAAACAAAAT 571
Query 962 GTCTTGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTGGAAACAAAGACCCAACAACAA 1021
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 572 GTCTCGAAGAAGACACTCAAGGAGAGAGTTCATCTAGTAGAAACAAAGACCCAACAACAA 631
Query 1022 AAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAACGTAGAAAGTCTTTCACATCTCTAC 1081
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 632 AAGTGTTGGATGTTACAGCGAAGCCAAAATCAAAGCGTAGAAAGTCTTTCACATCTCTAC 691
Query 1082 TAGTGAATGGATCAAAGTTCGATGAGAAAAATGGTGAAACCACAGAGCCAGAAAAACTTC 1141
|||| |||||||||||||| ||||||||||||||||||||||||||| |||| |||||||
Sbjct 692 TAGTAAATGGATCAAAGTTGGATGAGAAAAATGGTGAAACCACAGAGGCAGAGAAACTTC 751
Query 1142 CAAGCATTGATGATGAATCCAATCAGCTGGAAGTTGCAGAATATGTGGATGACATATATC 1201
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 752 CAAACATTGATGATGAATCCAATCAGTTGGAAGTTGCAGAATATGTGGATGACATATATC 811
Query 1202 AGTTCTATTGGACTGCAGAAGCATTAAATCCAGCTTTGGGACATTACTTGTCAGCTCATG 1261
||||||||||||||||||| || |||||||||||||||||| | ||||||||||||||||
Sbjct 812 AGTTCTATTGGACTGCAGAGGCGTTAAATCCAGCTTTGGGATACTACTTGTCAGCTCATG 871
Query 1262 CAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 872 CAGAAGTCAGTCCAGTTACGCGTGGAATTTTGATCAACTGGCTTATCGAAGTTCATTTCA 931
Query 1322 AATTTGATCTAATGCATGAGACTCTTTACCTGACAATGGACTTATTAGACCGTTACCTCT 1381
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 932 AATTTGATCTAATGCATGAGACTCTCTACCTGACAATGGACTTATTAGACCGTTACCTCT 991
Query 1382 CCCAAGTTCCAATACATAAAAATGAGATGCAATTGATAGGTCTTACTGCACTCTTATTGG 1441
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 992 CTCAAGTTCCAATACATAAAAATGAGATGCAATTGATTGGTCTTACTGCACTCTTATTGG 1051
Query 1442 CATCTAAATATGAGGACTACTGGCATCCTAGG 1473
||||||||||||||||||| ||||||||||||
Sbjct 1052 CATCTAAATATGAGGACTATTGGCATCCTAGG 1083
Score = 678 bits (367), Expect = 0.0
Identities = 399/415 (96%), Gaps = 0/415 (0%)
Strand=Plus/Plus
Query 1533 GGAGAGAAGTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTT 1592
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 GGAGAGGATTATGCTTAAACAGTTAAAGTTCCGTTTGAATGCACCCACCCCCTATGTTTT 1142
Query 1593 CATGTTGAGGTTCCTAAAAGCTGCTCAATCCAATAAGAAGCTTGAACAACTCGCCTTCTA 1652
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1143 CATGTTGAGGTTCCTAAAAGCTGCTCAATCAAATAAGAAGCTTGAACAACTCGCCTTCTA 1202
Query 1653 CCTTATCGAGTTGTGTTTGGTTGAGTACGAAGCTTTGAAGTATAAGCCATCACTGCTATG 1712
||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 1203 CCTTATCGAGTTGTGCTTGGTGGAGTACGAAGCTTTGAAGTATAAGCCATCATTGCTATG 1262
Query 1713 TGCATCAGCCATTTATGTTGCCAGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCT 1772
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1263 TGCATCAGCCATATATGTTGCCCGATGCACTTTGCATATGACTCCAGTTTGGACCTCGCT 1322
Query 1773 CCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGACTGTTCTGACATGATCTT 1832
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 1323 CCTAAACAACCATACCCACTACAATGTCTCCCAGATGAAGGATTGTTCTGACATGGTCTT 1382
Query 1833 AAGGTTTCACAAAGCTGCTAAAACAGGAAACCTGAGGGTCACTTATGAGAAGTACATAAA 1892
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1383 AAGGTTTCACAAAGCTGCTAAAACAGGAAAACTGAGGGTCACTTATGAGAAGTACATGAA 1442
Query 1893 TCCAGATCGCAGTAACGTCGCAGTCTTGAAGCCCTTAGATAAACTCCCTCTCTAA 1947
|||||||| |||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 1443 TCCAGATCACAGTAATGTCGCAGTCTTGAAACCCTTGGATAAACTCCCTCTCTAA 1497
Score = 213 bits (115), Expect = 4e-54
Identities = 145/159 (91%), Gaps = 4/159 (3%)
Strand=Plus/Plus
Query 1 ATGGCGTTCGCGAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGAGT 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1 ATGGCGTTCGCAAAGGCACCACGACTAAGTAGAGATGATATTCTTGGAAATCGAGTGGGC 60
Query 61 ACTAGGAGTTTCAAAATCTTCTCCGATAATCAGAAAACTGATCCAGCCAGTACAATAGGT 120
||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| |
Sbjct 61 ACTAGGAGTTTCAAAATCTTCTCTGATAATCAGAAAACTGATCCAGCGGGTACAGTAGTT 120
Query 121 ACTTCACAGAAGAAGACTCGTATTCCTTTGAGGAG-AAA 158
||||| ||||||| |||||||||||||||| || |||
Sbjct 121 ACTTCGCAGAAGA---CTCGTATTCCTTTGAGAAGGAAA 156
Score = 80.5 bits (43), Expect = 4e-14
Identities = 47/49 (96%), Gaps = 0/49 (0%)
Strand=Plus/Plus
Query 212 AGAAGGAAAATTCGAGAATCACAGGAAAGGGCAAAAGCAGTATTGAAAA 260
|||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 148 AGAAGGAAAATTCGAGAATCACAGGAAAGGGCGAAATCAGTATTGAAAA 196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5