BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16340.4
Length=1297
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312611 jgi|Araly1|312611|fgenesh1_pm.C_scaffold_1001391 1336 0.0
Ahg909580 jgi|Araly1|909580|Al_scaffold_0002_2661 979 0.0
> Ahg312611 jgi|Araly1|312611|fgenesh1_pm.C_scaffold_1001391
Length=864
Score = 1336 bits (723), Expect = 0.0
Identities = 832/882 (94%), Gaps = 18/882 (2%)
Strand=Plus/Plus
Query 174 ATGGCGAATTCAGCGTCACTACTGTATGATCAGCTCAAGGTTGCTGAGCCGTTTTTCTTA 233
|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1 ATGGCGAATTCAGCGTCACTACTGTACGATCAGCTCAAGGTTGCGGAGCCGTTTTTCTTG 60
Query 234 TTGGCTGGTCCAAATGTGATCGAATCCGAAGAGCATGTTCTTCGTATGGCTAAAAGCATC 293
|| ||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 61 TTTGCTGGTCCAAATGTGATTGAATCCGAAGAACATGTTCTTCGAATGGCGAAAAGCATC 120
Query 294 AAAGATATTTCGACAAAGTATGTGCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGAT 353
||||| ||||| || | | |||||| ||||| ||||||||||||||||||||||||
Sbjct 121 AAAGAGATTTCTAC--A--A--CGCTTGGATTGCCCCTGGTTTTCAAGTCAAGTTTCGAT 174
Query 354 AAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAG 413
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 175 AAAGCTAACAGAACTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAAGGTCTCAAG 234
Query 414 ATTCTTGAGAAGGTGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTTCATGAGTCG 473
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||
Sbjct 235 ATTCTTGAGAAGGTGAAAGTAGCATATGATCTACCAATCGTAACTGACGTTCATGAATCG 294
Query 474 AGTCAGTGTGAAGCAGTTGGCAAGGTTGCAGATATAATTCAGATACCGGCGTTCTTATGT 533
|| ||||||||||| || ||||||||||||||| ||||||||||||| ||||||||| |
Sbjct 295 AGCCAGTGTGAAGCGGTCGGCAAGGTTGCAGATGTAATTCAGATACCAGCGTTCTTA--T 352
Query 534 CGACAGACAGATCTTCTGGTCGCGGCAGCCCAAAGTGGGAAAATTATCAACATAAAGAAA 593
|||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 353 ----------ATCTTCTGGTCGCGGCAGCCCAAACTGGGAAAATTATCAACATAAAGAAA 402
Query 594 GGACAATTTTGTGGTCACTCTGTCATGAGAAACTCGGCTGAGAAGGTTAGACTCGCAGGG 653
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 403 GGACAATTTTGTGGTCACTCTGTCATGAGAAACTCGGCCGAGAAGGTTAGACTCGCAGGG 462
Query 654 AATCCAAATGTGATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTA 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 AATCCAAATGTGATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTA 522
Query 714 GATCCACGAAATTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GATCCACGAAATTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACT 582
Query 774 CATTCATTACAACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGTGGC 833
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 583 CATTCATTACAACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGAGGC 642
Query 834 CTTCGCGAATTAATACCATGCATAGCAAGAACCGCCGTAGCTGTTGGTGTCGATGGAATT 893
||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||
Sbjct 643 CTTCGCGAATTAATACCATGCGTAGCAAGAACAGCCGTAGCTGTTGGTGTCAATGGAATT 702
Query 894 TTCATGGAGGTGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGCCT 953
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 703 TTCATGGAGGTGCATGATGATCCTTTGAATGCACCAGTCGATGGTCCAACACAATGGCCT 762
Query 954 CTGCGTCATCTAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGG 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 CTGCGTCATCTAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGG 822
Query 1014 AAACAACAGTTCCAAATCGATCTCACGCCTTATCGTGATTAG 1055
||||| ||||||||||||||||||||||||||||||||||||
Sbjct 823 AAACAGCAGTTCCAAATCGATCTCACGCCTTATCGTGATTAG 864
> Ahg909580 jgi|Araly1|909580|Al_scaffold_0002_2661
Length=873
Score = 979 bits (530), Expect = 0.0
Identities = 760/871 (87%), Gaps = 16/871 (2%)
Strand=Plus/Plus
Query 189 TCACTACTGTATGATCAGCTCAAGGTTGCTGAGCCGTTTTTCTTATTGGCTGGTCCAAAT 248
|||| |||||| |||||||||||| |||||| || || ||||| |||||||||||||||
Sbjct 13 TCACCACTGTACAATCAGCTCAAGGCTGCTGAACCATTCTTCTTGTTGGCTGGTCCAAAT 72
Query 249 GTGATCGAATCCGAAGAGCATGTTCTTCGTATGGCTAAAAG--CATCAAAGATATTTCGA 306
|||||||||||||| || ||| ||||||| ||||| |||| ||| ||||| ||| | |
Sbjct 73 GTGATCGAATCCGAGGAACATATTCTTCGAATGGC--AAAGCACATTAAAGACATTGCCA 130
Query 307 CAAAGTATGTGCTTGGGTTGCCTCTGGTTTTCAAGTCAAGTTTCGATAAAGCTAACAGAA 366
|||| | | ||||| |||||||||| |||||||||||||| ||||||||||||||||
Sbjct 131 CAAA--A---G-TTGGGCTGCCTCTGGTCTTCAAGTCAAGTTTTGATAAAGCTAACAGAA 184
Query 367 CTTCATCAAAGTCCTTCCGAGGTCCTGGCATGGCTGAGGGGCTCAAGATTCTTGAGAAGG 426
|||| |||||||| || ||||||||||||||||| ||||| || ||||||||||||||||
Sbjct 185 CTTCTTCAAAGTCATTTCGAGGTCCTGGCATGGCCGAGGGTCTGAAGATTCTTGAGAAGG 244
Query 427 TGAAAGTAGCATTTGATCTACCAATCGTTACTGACGTTCATGAGTCGAGTCAGTGTGAAG 486
|||||||||||| |||||| ||||| |||||||| ||||| || || || ||||||||||
Sbjct 245 TGAAAGTAGCATATGATCTTCCAATAGTTACTGATGTTCACGAATCAAGCCAGTGTGAAG 304
Query 487 CAGTTGGCAAGGTTGCAGATATAATTCAGATACCGGCGTTCTTATGTCGACAGACAGATC 546
||||||||||||||||||||||||||||||| || || ||||||||||| ||||||||||
Sbjct 305 CAGTTGGCAAGGTTGCAGATATAATTCAGATTCCAGCATTCTTATGTCGCCAGACAGATC 364
Query 547 TTCTGGTCGCGGCAGCCCAAAGTGGGAAAATTATCAACATAAAGAAAGGACAATTTTGTG 606
||||||| || ||||| || | || ||||||||||| || |||||||||||||| ||||
Sbjct 365 TTCTGGTTGCAGCAGCACACACCGGAAAAATTATCAATATTAAGAAAGGACAATTCTGTG 424
Query 607 GTCACT-CTGTCATGAGAAACT-CGGCTGAGAAGGTTAGACTCGCAGGGAATCCAAATGT 664
|| || |||||||| |||| | | || |||||| | ||||| || ||||||||||||||
Sbjct 425 CTC-CTTCTGTCATG-GAAAATTCAGCCGAGAAGATCAGACTGGCTGGGAATCCAAATGT 482
Query 665 GATGGTTTGTGAAAGAGGAACCATGTTTGGATACAATGATTTAATAGTAGATCCACGAAA 724
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 483 TATGGTTTGTGAAAGAGGAACCATGTTCGGATACAATGATTTGATAGTAGATCCACGAAA 542
Query 725 -TTTGGAATGGATGAGGGAAGCTGATTGTCCCGTTGTTGCTGATATAACTCATTCATTAC 783
|||| | ||||||||||||||| ||||||| ||||| ||||||||||| |||||| |||
Sbjct 543 CTTTG-AGTGGATGAGGGAAGCTAATTGTCCTGTTGTCGCTGATATAACCCATTCACTAC 601
Query 784 AACAACCTGCAGGCAAGAAGTTAGATGGTGGGGGTGTTGCTAGTGGTGGCCTTCGCGAAT 843
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 602 AACAACCTGCAGGCAAGAAGTTGGATGGTGGTGGTGTTGCTAGTGGTGGCCTTCGCGAGT 661
Query 844 TAATACCATGCATAGCAAGAACCGCCGTAGCTGTTGGTGTCGATGGAATTTTCATGGAGG 903
||||||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct 662 TAATACCATGCATTGCAAGAACAGCTGTAGCAGTTGGCGTCGATGGAATTTTCATGGAGG 721
Query 904 TGCATGATGATCCTTTAAATGCACCGGTCGATGGTCCAACACAATGGCCTCTGCGTCATC 963
| |||||||||||| ||| ||| ||||| ||||||||||| ||||||||| |||| ||||
Sbjct 722 TTCATGATGATCCTCTAAGTGCTCCGGTTGATGGTCCAACTCAATGGCCTTTGCGCCATC 781
Query 964 TAGAAGAACTGCTAGAAGAGCTCATTGCAATCGCGAGTGTCACAAAGGGGAAACAACAGT 1023
|||||||||| || |||||||||||||| || ||||| |||||||| ||||| || | |
Sbjct 782 TAGAAGAACTCCTGGAAGAGCTCATTGCGATTGCGAGGGTCACAAAAGGGAAGCAGCGGC 841
Query 1024 TCCAAATCGATCTCACGCCTTATCGTGATTA 1054
|||||||||| || || || || ||||||||
Sbjct 842 TCCAAATCGACCTTACACCCTACCGTGATTA 872
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48492350424
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5