BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16350.1
Length=1644
Score E
Sequences producing significant alignments: (Bits) Value
Ahg920538 jgi|Araly1|920538|scaffold_101819.1 2486 0.0
Ahg477114 jgi|Araly1|477114|fgenesh2_kg.2__2244__AT1G79470.1 1212 0.0
> Ahg920538 jgi|Araly1|920538|scaffold_101819.1
Length=1551
Score = 2486 bits (1346), Expect = 0.0
Identities = 1469/1530 (96%), Gaps = 2/1530 (0%)
Strand=Plus/Plus
Query 1 ATGTCAGGATTCGAAGATGGATTTTCAGCTGAAAAGCTATTCTCACAAGGATACTCATAC 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 23 ATGTCAGGATTCGAAGATGGATTTTCAGCTGAAAAGCTATTCTCACAGGGATACTCATAC 82
Query 61 ACCTACGACGATGTGATATTTCTACCACACTTCATCGACTTTTCCACTGACGCCGTCTCG 120
||||||||||||||||| |||||||| |||| ||||||||||||||| ||||||||||||
Sbjct 83 ACCTACGACGATGTGATCTTTCTACCTCACTACATCGACTTTTCCACGGACGCCGTCTCG 142
Query 121 CTATCCACGCGTCTCAGCAAGCGCGTCCCACTCTCGATCCCATGCGTCGCTTCGCCGATG 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 143 TTATCCACGCGCCTCAGCAAGCGCGTCCCACTCTCGATCCCATGCGTCGCTTCGCCGATG 202
Query 181 GACACTGTCTCGGAATCCCACATGGCTGCTGCAATGGCTGCTCTTGGAGGAATCGGAATC 240
|||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 203 GACACTGTTTCTGAGTCCCACATGGCTGCTGCAATGGCTGCGCTTGGAGGAATCGGAATC 262
Query 241 GTGCACTATAACTGCGACATCGATACTCAAGCTTCCGTTATCCGTCACGCTAAATCGCTT 300
||||||||||| || |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 263 GTGCACTATAATTGTGACATCGAGACTCAAGCTTCCGTCATCCGTCACGCCAAATCGCTT 322
Query 301 CAAGTTCCGATTGCGTCTGATGCTGTTTTTAAATGCCCAGAGCACCAGATTGGTTCTGTT 360
||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||
Sbjct 323 CAAGTTCCGATTGCGTCTGATGCTGTTTTCAAATGCCCAGAGCATCAGATTGGTTCGGTT 382
Query 361 GATGATTTTGGTCCTTCTTCCTTCGTTTTTGTCTCGCAGACGGGAACATTGACACCGAAA 420
||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||
Sbjct 383 GATGATTTTGGTCCTTCTTCCTTCGTTTTCGTCTCGCAGACAGGAACACTGACACCGAAA 442
Query 421 TTGTTGGGTTATGTTTCAAAATCGGAGTGGTCGAGTATGAAAGATGACCAAAAGGAGGTG 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 443 TTGTTGGGTTATGTCTCAAAATCGGAGTGGTCGAGTATGAAAGATGACCAAAAGGAGATG 502
Query 481 AAGATATATGATTACATGAAGAGTTGTGAGAACAAAGATTACTATGTGCCATGGGATATT 540
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 503 AAGATATATGATTACATGAGGAGTTGTGAGAGCAAAGATTACTATGTGCCATGGGATATT 562
Query 541 GATCTTGACAAGATTGAGGCGGTTTTGGAAGATAAGCAGAAAGGGTTTGTTGTTCTGGAG 600
|||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 563 GATCTTGACAAGATCGAGGCGGTTTTGGAAGATAAGCAGAAAGGATTTGTGGTTCTGGAG 622
Query 601 AAGGAAGGTGAGACTGTGAACGTAGTAACAAAAGACGATGTGGAGAGGGTTAAAGGATAT 660
||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 AAGGATGGTGAGACCGTGAACGTAGTAACAAAAGACGATGTGGAGAGGGTTAAAGGATAT 682
Query 661 CCCAAGTTAGGGTCAGGAACTGTTGGTGCAGACAAGAAATGGATGGTTGGTGCTGCTATA 720
||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 683 CCCAAGTCAGGGTCAGGAACTGTTGGTGCAGACAAGAAATGGATGGTGGGTGCGGCTATA 742
Query 721 GGGACAAGGGAATCAGACAAGGAGAGGCTAGAGCACTTAGTGAAAGCTGGAGCTAATGTT 780
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 743 GGGACAAGGGATTCAGACAAGGAGAGGCTAGAGCATTTAGTGAAAGCTGGAGCTAACGTT 802
Query 781 GTGGTGTTGGATAGTTCGCAAGGGAACTCGA-TTTACCAGCTTGAGATGATCAAGTATGT 839
|||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 803 GTGGTGCTGGATAGTTCGCAAGGGAACTC-AGTTTACCAGCTTGAGATGATCAAGTATGT 861
Query 840 GAAGAATACGTATCCGGAGTTGGATGTGGTCGGTGGGAATGTGGTGACTATGTACCAGGC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 862 GAAGAATACGTATCCGGAGTTGGATGTGGTCGGTGGGAATGTGGTGACTATGTACCAGGC 921
Query 900 TGAGAACTTGATCAAAGCAGGAGTTGATGGGTTAAGAGTTGGTATGGGATCTGGATCTAT 959
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 922 AGAGAACTTGATCAAAGCAGGAGTTGATGGGTTGAGAGTTGGTATGGGATCTGGATCGAT 981
Query 960 ATGCACAACACAAGAGGTTTGTGCCGTTGGACGAGGACAGGCTACTGCCGTGTACAAAGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 ATGCACAACACAAGAGGTTTGTGCCGTTGGACGAGGACAGGCTACTGCCGTGTACAAAGT 1041
Query 1020 CTCGACACTAGCTGCTCAGCACGGTGTACCTGTTATCGCAGATGGTGGCATCTCAAACTC 1079
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1042 CTCGACGCTAGCTGCTCAGCACGGTGTACCTGTTATCGCAGATGGTGGTATCTCAAACTC 1101
Query 1080 AGGTCACATTGTGAAGGCTCTAGTTCTGGGAGCATCAACGGTGATGATGGGAAGCTTCTT 1139
||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1102 AGGTCACATTGTGAAGGCTCTAGTTCTTGGAGCATCAACTGTGATGATGGGAAGTTTCTT 1161
Query 1140 GGCTGGAAGCACCGAGGCTCCTGGAGCCTATGAATATCGAAACGGTAGGAGAGTGAAGAA 1199
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1162 AGCTGGAAGCACCGAGGCTCCGGGAGCTTATGAATATCGAAACGGCAGGAGAGTGAAGAA 1221
Query 1200 ATACAGAGGTATGGGTTCATTAGAAGCAATGACCAAAGGAAGCGACCAGAGATACTTGGG 1259
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 1222 ATACAGAGGTATGGGTTCTTTAGAAGCAATGACCAAAGGAAGTGACCAGAGATACTTGGG 1281
Query 1260 AGATACCGCGAAACTCAAGATTGCACAAGGAGTGGTTGGAGCGGTTGCAGATAAAGGCTC 1319
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1282 AGATACCGCGAAACTCAAGATTGCACAAGGAGTCGTTGGAGCGGTTGCGGATAAAGGCTC 1341
Query 1320 AGTGTTGAAGTTTATACCATACACAATGCATGCCGTGAAGCAAGGTTTTCAAGATCTCGG 1379
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 AGTGTTGAAGTTTATACCTTACACAATGCATGCCGTGAAGCAAGGTTTTCAAGATCTCGG 1401
Query 1380 TGCTTCTTCTTTGCAGTCTGCTCACGAGCTATTGAGAGATAATACCCTTAGACTCGAGGC 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TGCTTCTTCTTTGCAGTCTGCTCACGAGCTATTGAGAGATAATACCCTTAGACTCGAGGC 1461
Query 1440 TCGTACCGGTGCAGCACAGATAGAAGGTGGAATCCATGGACTGGTGTCTTACGAAAAGAA 1499
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1462 TCGTACCGGTGCAGCACAGGTAGAAGGTGGAGTCCATGGACTGGTGTCTTACGAAAAGAA 1521
Query 1500 ATCGTTTTAGCTTTCCCCAGTTTACTTTCT 1529
||||||||||| ||||| ||||||||||||
Sbjct 1522 ATCGTTTTAGCGTTCCCGAGTTTACTTTCT 1551
> Ahg477114 jgi|Araly1|477114|fgenesh2_kg.2__2244__AT1G79470.1
Length=1627
Score = 1212 bits (656), Expect = 0.0
Identities = 1253/1541 (81%), Gaps = 42/1541 (3%)
Strand=Plus/Plus
Query 1 ATGTCAG-GATTCGAAGATGGATTTTCAGCTGAAAAGCTATTCTCACAAGGATACTCATA 59
||||| | ||||||| || || ||| | || || ||||| ||| | || |||||||| ||
Sbjct 50 ATGTC-GAGATTCGAGGACGGCTTTGCTGCGGATAAGCTCTTCGCTCAGGGATACTCCTA 108
Query 60 CACCTACGACGATGTGATATTTCTACCACACTTCATCGACTTT-TCCACTGACGCCGTCT 118
||| |||||||| || || ||||| || |||| ||| || ||| ||||| ||||| || |
Sbjct 109 CACTTACGACGACGTCATCTTTCTTCCTCACTACATTGA-TTTCTCCACAGACGCTGTTT 167
Query 119 CGCTATCCACGCGTCTCAGCAAGCGCGTCCCACTCTCGAT-CCCATGCGTCGCTTCGCCG 177
| ||||||||||| || ||| |||||| || |||||||| ||| ||||| | || |||
Sbjct 168 CTCTATCCACGCGCCTTAGCCGGCGCGTGCCTCTCTCGATACCC-TGCGTTTCGTCTCCG 226
Query 178 ATGGACACTGTCTCGGAATCCCACATGGCTGCTGCAATGGCTGCTCTTGGAGGAATCGGA 237
||||||||||||||||| || |||||||||||||| |||||||| ||||| || || |||
Sbjct 227 ATGGACACTGTCTCGGAGTCTCACATGGCTGCTGCTATGGCTGCCCTTGGTGGGATTGGA 286
Query 238 ATCGTGCACTATAACTGCGACATCGATACTCAAGCTTCCG-TTATCCGTCACGCTAAATC 296
||||||||||||||||| ||||||| |||| || | || |||| || || || || ||
Sbjct 287 ATCGTGCACTATAACTGTGACATCGCCGCTCAGGCAT-CGATTATTCGCCAAGCCAAGTC 345
Query 297 GCTTC-AAGTTCCGATTGCGTCTGATGCTGTTTTTAAATGCCCAGAGCACCAGATTGGTT 355
|| || || ||||||||| || || || | | | || | ||| ||| | ||||| ||
Sbjct 346 GC-TCAAACATCCGATTGCTTCCGACGCCGGTGTGAAGTTCCCGGAGTATGAGATTACTT 404
Query 356 CTGTT-GATGATTTTGGTCCTTCTTCCTTCGTTTTTGTCTCGCAGACGGGAACATTGAC- 413
|| || |||| ||||||||||||||| |||||||||||| |||| || |||||| ||||
Sbjct 405 CT-TTAGATGCTTTTGGTCCTTCTTCATTCGTTTTTGTCACGCAAACAGGAACAATGACG 463
Query 414 A--CCGAAATTGTTGGGTTATGTTTCAAAATCGGAGTGGTCGAGTATGAAAGATGACCAA 471
| ||||||||||| || ||||| || |||||| ||||| |||| ||||| | || |||
Sbjct 464 ACTCCGAAATTGTTAGGCTATGTATCGAAATCGCAGTGGACGAGAATGAATTACGAACAA 523
Query 472 AAGGAGGTGAAGATATATGATTACATGAAGAGTTGTGAGAACAAAGATTACTATGTGCCA 531
| |||| |||||||||| |||||||||||||| ||||| | || || || | | | |||
Sbjct 524 AGGGAGATGAAGATATACGATTACATGAAGAGCTGTGATAGCAGCGACTATTGTTTACCA 583
Query 532 TGGGATATTGATCTTGACAAGATT-GAGGCGGTTTTGGAAGATAAGCAGAAAGGG-TTTG 589
||||| ||||||||||| || ||| ||| ||||| ||||||||||| |||||| ||||
Sbjct 584 TGGGACATTGATCTTGA-AAAATTGGAGTTTGTTTTAGAAGATAAGCA-AAAGGGCTTTG 641
Query 590 TTGTTCTGGAGAAGGAAGGTGAGACTGTGAACGTAGTAACAAAAGACGATGTGGAGAGGG 649
| ||||| |||| ||| ||||||||||||||||| || ||||| |||||| | |||||||
Sbjct 642 TGGTTCTTGAGAGGGATGGTGAGACTGTGAACGTGGTGACAAAGGACGATATAGAGAGGG 701
Query 650 TTAAAGGATATCCCAAGTTAGGGTCAGGAACTGTTGGTGCAGACAAG-AAATGGATGGTT 708
|||||||||||||||||| ||| |||| || || ||| | ||| | | |||||||||
Sbjct 702 TTAAAGGATATCCCAAGTCAGGACCAGGGACCGTGGGTCCTGAC-GGTGAGTGGATGGTT 760
Query 709 GGTGCTGCTATAGGGACAAGGGAATCAGACAAGGAGAGGCTAGAGCACTTAG-TGAAAGC 767
||||| || || ||||| |||||||| || ||||||||||| ||||| || | || | ||
Sbjct 761 GGTGCAGCGATTGGGACGAGGGAATCTGATAAGGAGAGGCTGGAGCATTTGGTTG-ATGC 819
Query 768 TGGAGCT-AATGTTGTGGTGTTGGATAGTTCGCAAGGGAACTCGATTTACCAGCTTGAGA 826
||| | | |||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 820 TGG-GGTCAATGCCGTTGTGTTGGATAGTTCGCAAGGGAACTCTATTTACCAGCTTGAGA 878
Query 827 TGATCAAGTATGTGAAGAATACGTATCCGGAGTTGGATGTGGTCGGTGGGAATGTGGTGA 886
|||||||||||||||| ||||| || || | |||||||| | ||||| ||||| ||||
Sbjct 879 TGATCAAGTATGTGAAAAATACTTACCCTCAATTGGATGTCATTGGTGGCAATGTTGTGA 938
Query 887 CTATGTACCAGGCTGAGAACTTGATCAAAGCAGGAGTTGATGGGTTAAGAGTTGGTATGG 946
| ||||||||||| |||| |||||| ||||||||||||||||||| ||||| |||||||
Sbjct 939 CAATGTACCAGGCACAGAATTTGATCCAAGCAGGAGTTGATGGGTTGAGAGTCGGTATGG 998
Query 947 GATCTGGATCTATATGCACAACACAAGAGGTTTGTGCCGTTGGACGAGGACAGGCTACTG 1006
||||||| || ||||| || || |||||||||||||| ||||| || |||||||||||||
Sbjct 999 GATCTGGTTCGATATGTACCACTCAAGAGGTTTGTGCAGTTGGTCGTGGACAGGCTACTG 1058
Query 1007 CCGTGTACAAAGTCTCGA-C-ACTAGCTGCTCAGCA-CGGTG-TACCTGTTATCGCAGAT 1062
| |||||||| || | | | | | || |||||| | ||| | | || ||||| || |||
Sbjct 1059 CTGTGTACAAGGTTT-GTTCGA-TCGCCGCTCAG-AGCGG-GATTCCAGTTATAGCGGAT 1114
Query 1063 GGTGGCATCTCAAACTCAGGTCACATTGTGAAGGCTCTAGTTCTGGGAGCATCAACGGTG 1122
||||| |||||||| |||||||||||||| |||||||| || || ||||||||||| ||
Sbjct 1115 GGTGGTATCTCAAATTCAGGTCACATTGTAAAGGCTCTCGTCCTTGGAGCATCAACTGTT 1174
Query 1123 ATGATGGGAAGCTTCTTGGCTGGAAGCACCGAGGCTCCTGGAGCCTATGAATATC-GAAA 1181
|||||||| ||||| || |||||||| || |||||||| || | || || ||| |||
Sbjct 1175 ATGATGGGTAGCTTTTTAGCTGGAAGTACTGAGGCTCCCGGGGGTTACGAGTATAAGAA- 1233
Query 1182 CGGTAGGAG-AGTGAAGAAATACAGAGGTATGGGTTCATTAGAAGCAATGACCAAAGGAA 1240
||||| ||| | | ||||| ||| | || ||||| || ||||||||||||| |||||||
Sbjct 1234 CGGTAAGAGGA-TCAAGAAGTACCGTGGAATGGGATCGCTAGAAGCAATGACTAAAGGAA 1292
Query 1241 GCGACCAGAGATACTTGGGAGATACCGCGAAACTCAAGATTGCACAAGGAGTGGTTGGAG 1300
| ||||| |||||||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct 1293 GTGACCAAAGATACTTGGGAGATAAAACAAAACTCAAGATTGCTCAAGGAGTGGTTGGAG 1352
Query 1301 CGGTTGCAGATAAAGGCTCAGTGTTGAAGTTTATACCATACACAATGCATGCCGTGAAGC 1360
| || || |||||||| ||||| |||||| | ||||| ||||||||||| |||||||| |
Sbjct 1353 CAGTCGCGGATAAAGGTTCAGTATTGAAGCTGATACCTTACACAATGCACGCCGTGAAAC 1412
Query 1361 AAGGTTTTCAAGATCTCGGTGCTTCTTCTTTGCAGTCTGCTCACGAGCTATTGAGAG-AT 1419
||||||| ||||| |||||||||||||| ||||| |||||||| || || |||||| |
Sbjct 1413 AAGGTTTCCAAGACCTCGGTGCTTCTTCCTTGCAATCTGCTCATGACCTGTTGAGATCAG 1472
Query 1420 A-ATACCCTTAGACTCGAGGCTCGTACCGGTGCAGCACAGATAGAAGGTGGAATCCATGG 1478
| || || |||| || |||||||| || |||||||||||| | ||||| ||| | || ||
Sbjct 1473 ACAT-CC-TTAGGCTTGAGGCTCGAACTGGTGCAGCACAGGTCGAAGGAGGAGTTCACGG 1530
Query 1479 ACTGGTGTCTTACGAAAAGAAATCGTTTTA-GCTTTCCCCA 1518
||||| ||||| ||||||||||||||||| |||||| |||
Sbjct 1531 GCTGGTTTCTTATGAAAAGAAATCGTTTTAAGCTTTCGCCA 1571
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61630016410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5