BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16360.1
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471832 jgi|Araly1|471832|fgenesh2_kg.1__1786__AT1G16360.1 1657 0.0
> Ahg471832 jgi|Araly1|471832|fgenesh2_kg.1__1786__AT1G16360.1
Length=1123
Score = 1657 bits (897), Expect = 0.0
Identities = 1055/1130 (93%), Gaps = 15/1130 (1%)
Strand=Plus/Plus
Query 13 AAACATAATTTGTTGGCT-AACTTTGCTTCATCAGATTCAAGATTTACCCAACAGGAGCT 71
|||| |||| |||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 1 AAACCTAATCTGTTGGCTGAA-TTTGCTTCATTAGATTCAAGATTTACCCAACAGGAGCT 59
Query 72 TCCAGCATGCAAACCAATTCTTACTCCAAAATGGGTGATTCTGACTTTTCTTGTCTC-GG 130
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TCCAGCATGCAAACCCATTCTTACTCCAAAATGGGTGATTCTGACTTTTCTTGTCTCAGG 119
Query 131 GTGTTGTCTTTATTCCTCTGGGAGTGATTTGTCTATTTGCTTCTCAGGGTGTCATCGAAA 190
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 G-GTTGTCTTTATTCCTCTTGGAGTGATTTGCCTATTTGCTTCTCAGGGTGTCATCGAAA 178
Query 191 TTGTTGATCGATATGACACAGACTGCATTCCATTATCCTCTAGGGATAACAAAGTCCGAT 250
||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| |||
Sbjct 179 TTGTTTATCGATATGACATAGACTGCATTCCATTATCCTCTAGGGACAACAAAGTCAGAT 238
Query 251 ACATACAGGGCTTGGAAGATAAGAGGTGTAACAGAACAATAACGGTGACAAAAACTATGA 310
||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 239 ACATACAGGGCTTAGAAGATAAGAGGTGTAACAGAACAATAATGGTGACAAAAACTATGA 298
Query 311 AGAATCCGGTCTACGTATATTATCAGCTAGAGAACTATTACCAAAACCATCGACGGTATG 370
|||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 299 AGAATCCGGTGTATGTATATTACCAGCTTGAGAACTATTACCAAAACCATCGACGGTATG 358
Query 371 TGAAAAGTCGACAAGATGGACAACTGAGAAGTCCAAAAGATGAACACGAAACCAAATCAT 430
||||||||||||||||||||||| |||||||||| |||||||| ||||| |||||||
Sbjct 359 TGAAAAGTCGACAAGATGGACAATTGAGAAGTCCGAAAGATGAGCACGATGTGAAATCAT 418
Query 431 GTGC-CCCGGAGGATAC-ACTAGGTGGTCAACCTATTGTTCCTTGTGGTCTTGTTGCTTG 488
|||| ||| |||||||| | ||| |||| |||| ||||||||||||||||||||||||||
Sbjct 419 GTGCGCCC-GAGGATACTA-TAGATGGTGAACCCATTGTTCCTTGTGGTCTTGTTGCTTG 476
Query 489 GAGTTTGTTCAATGATACTTATGATTTCACTAGAAACAACCAAAAACTTCCAGTGAATAA 548
|||||||||||||||||||||||| |||||||||||||| |||||||| || ||||||||
Sbjct 477 GAGTTTGTTCAATGATACTTATGACTTCACTAGAAACAATCAAAAACTCCCTGTGAATAA 536
Query 549 GAAAGACATCTCGTGGAAGAGTGATAGAGAATCAAAGTTTGGTAAAAATGTCTTCCCAAA 608
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 537 GAAAGGCATCTCATGGAAGAGTGATAGAGAATCAAAGTTTGGTAAAAATGTCTTCCCGAA 596
Query 609 AAATTTCCAGAAAGGATCTCTCATCGGCGGTAAAAGTCTTGATCAAGATATTCCATTGAG 668
|||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||| ||
Sbjct 597 AAATTTCCAGAAAGGATCTCCCATCGGCGGTAAAAGTCTTGATCCTGATGTTCCATTAAG 656
Query 669 TGAGCAAGAAGATCTAATTGTCTGGATGCGAACCGCGGCTTTACCAACATTTAGAAAGCT 728
||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 657 TGAACAAGAAGATCTAATTGTCTGGATGCGAACTGCGGCTCTACCAACATTTAGAAAGCT 716
Query 729 GTATGGCAAAATAGACACTGATCTTCAAGCTGGAGATACGATAAAGGTCTTGTTGCAGAA 788
||| || |||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 717 GTACGGTAAAATAGATACTGATCTTCAAGCCGGAGATACGATAAAGGTCTTGTTACAGAA 776
Query 789 TAATTACAACACTTATAGCTTTAATGGGAAA-AAGAAGCTTGTGCTATCTACCACTAGCT 847
|||||||||||||||||||| ||| ||||| |||||||||||||| |||||||||||||
Sbjct 777 CAATTACAACACTTATAGCTTCAAT-GGAAAGAAGAAGCTTGTGCTCTCTACCACTAGCT 835
Query 848 GGCTCGGTGGAAGGAATGATTTCCTTGGGATTGCGTATTTGACTGTTGGTAGCATATGCT 907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GGCTCGGTGGAAGGAATGATTTCCTTGGGATTGCGTATTTGACTGTTGGTAGCATATGCT 895
Query 908 TGTTCTTGGCTGTTTCCTTCTCCGTCTTGTATCTAGCAAAACCAAGGCAACTGGGAGATC 967
|||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 896 TGTTCTTGGCTGTTTCCTTCTCTGTCTTGTATCTAGCAAAACCAAGGCAATTGGGAGATC 955
Query 968 CATCGTACTTGTCATGGAACAGAAGTGCTGGAGGTGGAAGATGATAGGA-TTCTCTTAAG 1026
|||||||||||||||||||||||||||||||||||||| ||||||| || || | |||||
Sbjct 956 CATCGTACTTGTCATGGAACAGAAGTGCTGGAGGTGGACGATGATAAGAGTTGTTTTAAG 1015
Query 1027 CTCTTGTTTGTTGTATT-TGGGATCTGTCACATACTTCTCCTTCTTTTGGTAAATAAATT 1085
|||||||||||||| || ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1016 CTCTTGTTTGTTGT-TTCTGGGATCTGTCACTTACTTCTCCTTCTATTGGTAAATAAATT 1074
Query 1086 CACTATGAGAATAGATGTTTACCGTTTATGAGAAATTAT-ATGTATAGAC 1134
| |||||||||||||| |||||||||||||||||| || ||||||||||
Sbjct 1075 CCCTATGAGAATAGATTTTTACCGTTTATGAGAAAA-ATTATGTATAGAC 1123
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44908796226
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5