BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16370.1
Length=1754
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471833 jgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1 1869 0.0
Ahg477106 jgi|Araly1|477106|fgenesh2_kg.2__2236__AT1G79410.1 802 0.0
> Ahg471833 jgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1
Length=1657
Score = 1869 bits (1012), Expect = 0.0
Identities = 1165/1237 (94%), Gaps = 18/1237 (1%)
Strand=Plus/Plus
Query 55 GAAACTAAACGATAATGGCTGATCCAATATCAGAACCATTGTTGTCTCATCTCACCGATG 114
|||||||||| ||||||| |||||| |||||||||||||||||||||| || || |||
Sbjct 1 GAAACTAAACAATAATGGATGATCC---ATCAGAACCATTGTTGTCTCATTTCGCCAATG 57
Query 115 ATTCTGGAGTCAACGAAAAAACCAGATTAGAAGCATTGACTTTCGACAAGATCGTCGAAC 174
|||||||||||||||| |||| | |||||||||||||||||||||||||||||
Sbjct 58 ATTCTGGAGTCAACGACAAAA-C--------AGCATTGACTTTCGACAAGATCGTCGAAC 108
Query 175 AAAGTCTATCAGATTTCGGATTCTGGCAATTTTTCCAGATTTCCCTCGTTGGACTAGCTT 234
| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 109 AGAGTCTATCAGATTTCGGATTCTGGCAATTTTTCCAGATATCCCTGGTTGGACTCGCTT 168
Query 235 TGCTCTTCGACGCTCAGCAGATATTCATCACCGTGTACACAGATGCTTATCCCACGTGGC 294
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TGCTCTTCGATGCTCAGCAGATATTCATCACCGTGTACACAGATGCTTATCCCACGTGGC 228
Query 295 ACTGTCTTAACCACACGATCTGTGATCCTTCAGCCTCCGACATCTGCAAGCTTCCAAGAT 354
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 229 ACTGTCTTAACCACACGATTTGTGATCCTTCAGCTTCCGACATCTGCAATCTTCCAAGAT 288
Query 355 CAGCTTGGGAATGGGACGGTGGCTCCCAGGGCAAATCCGTCATTTCCGAATTTGGCCTCG 414
|||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||||
Sbjct 289 CAGCTTGGGAATGGGACGGTGGATCCAAGGGCAAATCCGTCATTTCTGAATTCGGCCTCG 348
Query 415 AGTGCTCGAGCTCTTTACTCAGAGGTATGCCTAGTTCTGCTTTCTACATCGGTGCCATTG 474
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 349 AGTGCTCGAGGTCTTTACTCAGAGGTATGCCTAGTTCCGCTTTCTACATCGGTGCCATTG 408
Query 475 TTGGAGGGTTTTTTCTTGCTTTGATTCCAGACGATTCCTTGGGTCGCAAGAAACTAGTTT 534
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 409 TTGGAGGGTTTTTTCTAGCTTTGATCCCAGACGATTCCTTGGGTCGCAAGAAACTAGTTG 468
Query 535 TGTTCTCAACCTTTGCAATGTCAATCACTTCAATCTCTGTTATCTTCTCAACCAATGTAT 594
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 469 TGTTCTCAACCTTTGCAATGTCAATCACTTCAATCTGTGTTATCTTCTCAACCAATATAT 528
Query 595 GGATTTATACATTCCTTAAGTTTATCATTGGATTTTCGCGATCACAGACCTGGTCATACG 654
|||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||
Sbjct 529 GGATTTATACATTCCTAAAGTTTTTCATCAGATTTTCGCGATCACAGACCTGGTCATACG 588
Query 655 CGTTGGTTCTCATCAGTGAGCGAGTCTCCACCAGATGGAGACCGAGAGCTACGATGATTC 714
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 589 CGTTGGTTCTCATCAGTGAGCGAGTCTCCACCAGATGGAGACCTAGAGCTACAATGATTC 648
Query 715 CATTTACCCTATTCGTTTTAGGGTTTATGTCGTTGTCTGGAATCGCTTTCCTTGCACAAG 774
||||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 649 CATTTACCCTATTTGTTTTAGGGTTTATGTCGTTGTCTGGAATCGCTTACCTTGCTCAAG 708
Query 775 ATTCTTCATGGAGATATCTATATCTATACACATCAGTTCCAGCGGTATTTTACTGTATCT 834
||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||
Sbjct 709 ATTCTTCATGGAGATATCTCTATCTATACACATCTGTTCCAGCGATATTTTACTGTATCT 768
Query 835 TCCTCTACCTCTTCGCACTCGAATCGCCTCGGTGGCTTCACATGCAAGGAAAGGATAAAG 894
||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 769 TCCTCTACCTCTTTGCACTCGAATCACCTCGGTGGCTTCACATGCAAGGAAATGATAAAG 828
Query 895 AAGCCATTGATGTTCTCACAAAGATGTCACCGAAGGAA-AAAGCTTATTTGGAATCAGTG 953
|||||||||||||||||||||||||||| |||||| || |||||||||||||||||||||
Sbjct 829 AAGCCATTGATGTTCTCACAAAGATGTCGCCGAAG-AACAAAGCTTATTTGGAATCAGTG 887
Query 954 GTTTCTAAGTTACCCCTCAAGCAAGAAAACTTTGAACAAGCGCCAACTTACTCGATTAAG 1013
|||||||||||||||| | ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 888 GTTTCTAAGTTACCCCACGAGCAAGAAAACTTTGAACAAGTGCCAACTTACTCTATTAAG 947
Query 1014 GACTTCTTCTTCCGAAAATGGGCTTTTC-GTAGGATTTTAGTTGTTATGATCATAATGTT 1072
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 948 GACTTCTTCTTCCGAAAATGGGCTTTTCAG-AGGATTTTAGTTGTTATGATCATAATGTT 1006
Query 1073 TGGGTTGGGAATATCGTATTACGGCGTTCCTTTAGCAGCTAGAGACATAGACGTCAACAT 1132
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1007 TGGGTTGGGAATATCGTATTACGGTGTTCCTTTAGCAGCTAGAGACATAGACGTCAACAT 1066
Query 1133 CTACTTGAGTGAAACCCTAAATGCATTGGTGGAGTTGCCTACTTTTGTTATCACTCCGAT 1192
|||||||||||||||||||||||||||||||||| |||||||||| || |||||||| ||
Sbjct 1067 CTACTTGAGTGAAACCCTAAATGCATTGGTGGAGCTGCCTACTTTCGTCATCACTCCAAT 1126
Query 1193 CTTATTGGAGAGATTCAACAGAAGAAGCTCTGTTCTTGTGAATACCTTACTCGGTGGGGC 1252
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1127 CTTATTGGAGAGATTCAACAGAAGAAGCTCTGTTCTAGTGAATACCTTACTTGGTGGGGC 1186
Query 1253 ATCAGGG-GTGCTCTGTTTCGTTCTCAGCATTCTCGG 1288
||| ||| ||||||||||| ||||||||||| |||||
Sbjct 1187 ATC-GGGAGTGCTCTGTTTTGTTCTCAGCATCCTCGG 1222
Score = 678 bits (367), Expect = 0.0
Identities = 416/440 (95%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 1317 CTCGGAACATTCTTCTGCGCTAGAATCGGATTTAACCTTATGGCAGTTTTTATGGTTGAA 1376
|||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||
Sbjct 1218 CTCGGAACATTCTTCTGCGCAAGGATCGGATTCAACCTTATGGCAGTTTTTATGGTTGAA 1277
Query 1377 ATGTTTCCAACTTGTGTGAGAAGCTCGGCAACAATGATGTTTAGACAGGCTCTTGTCGTT 1436
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1278 ATGTTTCCAACTTGTGTGAGAAGTTCGGCAACAATGATGTTTAGACAGGCTCTTGTTGTT 1337
Query 1437 GGAGGAGCTTGTTGTCCGCTAATTGCTTCGATTGGAAGATACATACCCTCAGTATCGTTT 1496
|||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||||||
Sbjct 1338 GGAGGAGCTTGTTGTCCGTTAATTTCTTCGATTGGAAGATACATTCCGTCAGTATCGTTT 1397
Query 1497 GCGATTTTTGGAATTGCAATGTCTGGTTTAGGAATGTTCGTTTTGATTCTGCCTGAGACA 1556
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1398 GCGATTTTTGGAATTGCAATGTCAGGTTTAGGATTGTTCGTTTTGATTCTGCCTGAGACA 1457
Query 1557 AAAGGTTTGAGTCTCTGCGATTCGATGGAAGAACAAGAAAAGAGAGATCAAGCCGTAAAT 1616
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1458 AAAGGTTTGAGTCTCTGCGACTCAATGGAAGAACAAGAAAAGAGAGATCAAGCCGTAAAC 1517
Query 1617 ACCAGCCATGTTTGCTGAGAGTTTAAGAGTTTGTTTAGCTCAAACATTCTCCATTTTCAT 1676
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1518 ACTAGCCATGTTTGCTGAGAGTTTAAGAGTTTGTTTAGCTTAAACATTCTCCATTTTCAT 1577
Query 1677 ATGTTTTCTATTATGTGATGTTTGTCTTGATTTTA-A-GAGTAAACTATTTTAAGTTGTG 1734
|||||||| ||| |||||||||||||||||||||| | ||||||| ||||| ||||| ||
Sbjct 1578 ATGTTTTCAATTCTGTGATGTTTGTCTTGATTTTATAAGAGTAAAATATTTGAAGTTTTG 1637
Query 1735 TCAAGTAAAAACTAAAGAGT 1754
| ||||||||||||||||||
Sbjct 1638 TTAAGTAAAAACTAAAGAGT 1657
> Ahg477106 jgi|Araly1|477106|fgenesh2_kg.2__2236__AT1G79410.1
Length=1750
Score = 802 bits (434), Expect = 0.0
Identities = 1161/1507 (77%), Gaps = 69/1507 (5%)
Strand=Plus/Plus
Query 151 TGACTTTCGACAAGATCGTCGAACAAAGTC-TATCAGATTTCGGATTCTGGCAATTTTTC 209
||||||||||||||||| |||||||||| | | || ||||| ||||||| ||| || ||
Sbjct 105 TGACTTTCGACAAGATCCTCGAACAAAG-CTTGTCTGATTTTGGATTCTCGCAGTTCTTA 163
Query 210 CAGAT--TTCCCTCGTTGGACTAGCT-TTGCTCTTCGACGCTCAGCAGATATTCATCACC 266
||||| || |||||||| || ||| | | ||| ||||| ||||||||||||||||||
Sbjct 164 CAGATAGTT--CTCGTTGGGCTCGCTCTAAC-CTTTGACGCACAGCAGATATTCATCACC 220
Query 267 GTGTACACAGATGCTTATCCCACGTGGCACTGTCTTAACCACACGATCTGTGATCCTTCA 326
|| | ||||||||| |||||||||||||||||||| ||||||||||||| |||| ||
Sbjct 221 GTCTTCACAGATGCATATCCCACGTGGCACTGTCTCGACCACACGATCTGCAATCCGGCA 280
Query 327 GCCTCCGACATCTGCAAGCTTCCAAGATCAGCTTGGGAATGGGACGGTGGCTCCCAGGGC 386
| |||| ||||| ||| |||| | ||||||||||| ||||||||||| | | ||||
Sbjct 281 ACGACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGAGTGGGACGGTGGTTTCAAGGGT 340
Query 387 AAATCCGTCATTTCCGAATTTGGCCTCGAGTGCTCGAGCTCTTTACTCAGAGGTATGCCT 446
||||| |||||||| || || | ||||||||||| ||||| || | |||| || | ||
Sbjct 341 AAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCAAGCTCCTTCCGCAGAAGTCTACCA 400
Query 447 AGTTCTGCTTTCTACATCGGTGCCATTGTTGGAGGGTTTTTTCTT-GCTTTGATTCCAGA 505
||||| |||| || | ||| | || |||||| || | |||| ||| |||| || ||
Sbjct 401 AGTTCAACTTTTTATGTGGGTTCTATCGTTGGA-GGAGTCGTCTTGGCTCTGATCCCTGA 459
Query 506 CGATTCCTTGGGTCGCAAGAAACTAGTTTTGTTCTCAACCTTTGCAATGTCAATCACTTC 565
|| ||||||||| || ||| |||| |||| ||||| | ||||||||||| |||||
Sbjct 460 CGGTTCCTTGGGACGGAAGCAACTTCTTTTCTTCTCGAGTTTTGCAATGTCCCTCACTGG 519
Query 566 AATCTCTGTTATCTTCTCAACCAATGTATGGATTTA-TACATTCCTT-AAGTTTATCATT 623
|||||| || |||| || |||| ||||||| || | | || ||| || || | ||
Sbjct 520 AATCTCCATTTTCTTATCCTCCAACATATGGATCTACT-C-TTTCTTAAAATTCGTGATC 577
Query 624 GGATTTTCG--CGATCACAGACCT-GGTCATACGCGTTGGTTCTCATCAGTGAGCGAG-T 679
|| ||||| || || |||| || || |||||||||| ||||| || |||||||||| |
Sbjct 578 GG--TTTCGCCCGTTCCCAGA-CTGGGACATACGCGTTAGTTCTGATAAGTGAGCGAGTT 634
Query 680 CTCCACCAGATGGAGACCGA-GAGCTACGATGATTCCATTTACCCTATTCGTTTTAGGGT 738
| |||||| || |||||| | ||||||| |||||||| ||||| || || || |||||||
Sbjct 635 C-CCACCAAATTGAGACC-ACGAGCTACTATGATTCCGTTTACTCTGTTTGTGTTAGGGT 692
Query 739 TTATGTCGT-TGTCTGGAATCGCTTTCCTTGCACAAG-ATTCTTCATGG-AGATATCTAT 795
| ||||| | ||||||||||||||| ||||| | | | |||| ||| | || ||| |
Sbjct 693 TCATGTC-TCTGTCTGGAATCGCTTACCTTG-TCCGGCACGCTTCCTGGAAAAT-TCTCT 749
Query 796 ATCTATACACATCAGTTCCAGC-GGTATTTTACTGTATCTTCCTCTACCTCTTCGCACTC 854
|||||| |||||| ||||| || || | | || |||| ||| |||| |||| || ||
Sbjct 750 ATCTATGCACATCCGTTCCTGCAGG-AATCCACAGTATTTTCATCTATTTCTTTGCCCTA 808
Query 855 GAATCGCCTCGGTGGCTTCACATGCAAGGAAAGGATAAAGAAGCCATTGATGTTCTCACA 914
|| || || || ||||| || || |||| ||| | ||||||||||||| || |||| |
Sbjct 809 GAGTCCCCGCGTTGGCTCCATTTGGAAGGTAAGAACGAAGAAGCCATTGAAGTGCTCA-A 867
Query 915 AA-GATGTCACC-G-AAGGAAAAAGCTTATTTGGAATCAGTGGT-TTCTAAGTTACCCCT 970
|| ||| ||||| | || | |||| ||| |||||||| || | ||||| |||||| |
Sbjct 868 AAGGATTTCACCTGCAA--ACAAAGGTTACTTGGAATCCGT-ATCTTCTAGGTTACCTC- 923
Query 971 CAAGCAAGAAA-ACTTTGAACAAGCGCCAA-CTTACTCGATTAAGGACTTCTTC-TTCCG 1027
||| |||||| || | || ||| | ||| | ||||| || |||||||| ||| || |
Sbjct 924 CAA--AAGAAACAC-TAGACCAAACTTCAAGC-TACTCCATCAAGGACTTATTCATT-AG 978
Query 1028 AAAATGGGCTTTTCGTAGGA-TTTTAGTTGTTATGATCATAATGTTTGGGTTGGGAATAT 1086
|||||||||||||| | || | | ||||||||||||||||||||||||||||||| |
Sbjct 979 AAAATGGGCTTTTC-AAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGT 1037
Query 1087 CGTATTACGGCGTTCCTTTAGCAGCTAGAGACATAGACGTCAACATCTACTTGAGTGAAA 1146
| ||||| || ||||| ||||| | |||||||||| | || ||||| || ||||| |||
Sbjct 1038 CCTATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATTTGAGCGAAG 1097
Query 1147 CCCTAAATGC-ATTGGTGGAGTTGCCTACTTTTGTTATCACTCCGATCTTATTGGAGAGA 1205
||||||| || || ||||||||| || || |||||| | || ||||| || | |||| |
Sbjct 1098 CCCTAAACGCCAT-GGTGGAGTTACCAACATTTGTTGTTACACCGATATTGCTCGAGAAA 1156
Query 1206 TTCAACAGAAGAAGCTCTGTTCTTGTGAATACCTTACTCGGTGGGGCATCAGGGGTGCTC 1265
|||| ||| ||||||||||| ||||| ||| |||| | || || |||||||| ||||||
Sbjct 1157 TTCAGCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCTC 1216
Query 1266 TGTTTCGTTC-TCAGCATTCT-CGGCAAAACAGAGATCGCGTTT-GC-CTTCGAACTCGG 1321
||||||| | | ||| || | ||| | |||| | ||||| ||| || || |||||||||
Sbjct 1217 TGTTTCGC-CATGAGCCTT-TACGGGAGAACAAAAATCGC-TTTCGCTCT-CGAACTCGG 1272
Query 1322 AACATTCTTCTGCGCTAGAATCGGATTTAACCTTA-TGGCAGTTTTTATGGTTGAAATGT 1380
| ||||||| |||||| || ||||| || ||| |||| |||| ||||||||| | |
Sbjct 1273 TTCTTTCTTCTTCGCTAGGATTGGATTCAAT-TTAATGGCGGTTTATATGGTTGAGCTAT 1331
Query 1381 TTCCAACTTGTGTGAG-AAGCTCGGCAACAATGATGTTTAGACAGGCTCTTGTCGTTGGA 1439
| || || || ||||| || || ||||||||||| ||||||| || ||||| ||||||
Sbjct 1332 TCCCTACATGCGTGAGGAATAGCG-CAACAATGATGCTTAGACAAGCGCTTGTGGTTGGA 1390
Query 1440 GGAGCTTGTTGTCCGCTAATTGCTTCGATTGGAAGATACATACCCTCAGTATCGTTT-GC 1498
||||||||||| || || ||||||||| |||||||| | || || ||| | || ||| ||
Sbjct 1391 GGAGCTTGTTGCCCACTCATTGCTTCGCTTGGAAGAAATATTCCGTCACTCTC-TTTCGC 1449
Query 1499 GATTTTTGGAATTGCAATGTCTGGTTTAGGAATGTTCGTTTTGATTCTGCCTGAGACAAA 1558
| |||| ||| |||||||||| ||| | || | |||| || |||| |||||||| ||
Sbjct 1450 GGTTTTCGGATTTGCAATGTCGGGTCTCGGGTTATTCGCGCTGCTTCTTCCTGAGACCAA 1509
Query 1559 AGGTTTGAGTCTCTGCGATTCGATGGAAGAACAAGAA-AAGAGAGATCAAGCCGTAAATA 1617
||| | ||||| || ||| | |||||||||||||| || ||||| |||||| | || |
Sbjct 1510 AGGGTCAAGTCTTTGTGATACAATGGAAGAACAAGAGCAA-AGAGACCAAGCCTTGAAGA 1568
Query 1618 CCAGCCA 1624
| |||||
Sbjct 1569 CTAGCCA 1575
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65819943360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5