BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16370.1 Length=1754 Score E Sequences producing significant alignments: (Bits) Value Ahg471833 jgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1 1869 0.0 Ahg477106 jgi|Araly1|477106|fgenesh2_kg.2__2236__AT1G79410.1 802 0.0 > Ahg471833 jgi|Araly1|471833|fgenesh2_kg.1__1787__AT1G16370.1 Length=1657 Score = 1869 bits (1012), Expect = 0.0 Identities = 1165/1237 (94%), Gaps = 18/1237 (1%) Strand=Plus/Plus Query 55 GAAACTAAACGATAATGGCTGATCCAATATCAGAACCATTGTTGTCTCATCTCACCGATG 114 |||||||||| ||||||| |||||| |||||||||||||||||||||| || || ||| Sbjct 1 GAAACTAAACAATAATGGATGATCC---ATCAGAACCATTGTTGTCTCATTTCGCCAATG 57 Query 115 ATTCTGGAGTCAACGAAAAAACCAGATTAGAAGCATTGACTTTCGACAAGATCGTCGAAC 174 |||||||||||||||| |||| | ||||||||||||||||||||||||||||| Sbjct 58 ATTCTGGAGTCAACGACAAAA-C--------AGCATTGACTTTCGACAAGATCGTCGAAC 108 Query 175 AAAGTCTATCAGATTTCGGATTCTGGCAATTTTTCCAGATTTCCCTCGTTGGACTAGCTT 234 | |||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 109 AGAGTCTATCAGATTTCGGATTCTGGCAATTTTTCCAGATATCCCTGGTTGGACTCGCTT 168 Query 235 TGCTCTTCGACGCTCAGCAGATATTCATCACCGTGTACACAGATGCTTATCCCACGTGGC 294 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 169 TGCTCTTCGATGCTCAGCAGATATTCATCACCGTGTACACAGATGCTTATCCCACGTGGC 228 Query 295 ACTGTCTTAACCACACGATCTGTGATCCTTCAGCCTCCGACATCTGCAAGCTTCCAAGAT 354 ||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||| Sbjct 229 ACTGTCTTAACCACACGATTTGTGATCCTTCAGCTTCCGACATCTGCAATCTTCCAAGAT 288 Query 355 CAGCTTGGGAATGGGACGGTGGCTCCCAGGGCAAATCCGTCATTTCCGAATTTGGCCTCG 414 |||||||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||| Sbjct 289 CAGCTTGGGAATGGGACGGTGGATCCAAGGGCAAATCCGTCATTTCTGAATTCGGCCTCG 348 Query 415 AGTGCTCGAGCTCTTTACTCAGAGGTATGCCTAGTTCTGCTTTCTACATCGGTGCCATTG 474 |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 349 AGTGCTCGAGGTCTTTACTCAGAGGTATGCCTAGTTCCGCTTTCTACATCGGTGCCATTG 408 Query 475 TTGGAGGGTTTTTTCTTGCTTTGATTCCAGACGATTCCTTGGGTCGCAAGAAACTAGTTT 534 |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 409 TTGGAGGGTTTTTTCTAGCTTTGATCCCAGACGATTCCTTGGGTCGCAAGAAACTAGTTG 468 Query 535 TGTTCTCAACCTTTGCAATGTCAATCACTTCAATCTCTGTTATCTTCTCAACCAATGTAT 594 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 469 TGTTCTCAACCTTTGCAATGTCAATCACTTCAATCTGTGTTATCTTCTCAACCAATATAT 528 Query 595 GGATTTATACATTCCTTAAGTTTATCATTGGATTTTCGCGATCACAGACCTGGTCATACG 654 |||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||| Sbjct 529 GGATTTATACATTCCTAAAGTTTTTCATCAGATTTTCGCGATCACAGACCTGGTCATACG 588 Query 655 CGTTGGTTCTCATCAGTGAGCGAGTCTCCACCAGATGGAGACCGAGAGCTACGATGATTC 714 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 589 CGTTGGTTCTCATCAGTGAGCGAGTCTCCACCAGATGGAGACCTAGAGCTACAATGATTC 648 Query 715 CATTTACCCTATTCGTTTTAGGGTTTATGTCGTTGTCTGGAATCGCTTTCCTTGCACAAG 774 ||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 649 CATTTACCCTATTTGTTTTAGGGTTTATGTCGTTGTCTGGAATCGCTTACCTTGCTCAAG 708 Query 775 ATTCTTCATGGAGATATCTATATCTATACACATCAGTTCCAGCGGTATTTTACTGTATCT 834 ||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||| Sbjct 709 ATTCTTCATGGAGATATCTCTATCTATACACATCTGTTCCAGCGATATTTTACTGTATCT 768 Query 835 TCCTCTACCTCTTCGCACTCGAATCGCCTCGGTGGCTTCACATGCAAGGAAAGGATAAAG 894 ||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 769 TCCTCTACCTCTTTGCACTCGAATCACCTCGGTGGCTTCACATGCAAGGAAATGATAAAG 828 Query 895 AAGCCATTGATGTTCTCACAAAGATGTCACCGAAGGAA-AAAGCTTATTTGGAATCAGTG 953 |||||||||||||||||||||||||||| |||||| || ||||||||||||||||||||| Sbjct 829 AAGCCATTGATGTTCTCACAAAGATGTCGCCGAAG-AACAAAGCTTATTTGGAATCAGTG 887 Query 954 GTTTCTAAGTTACCCCTCAAGCAAGAAAACTTTGAACAAGCGCCAACTTACTCGATTAAG 1013 |||||||||||||||| | ||||||||||||||||||||| |||||||||||| |||||| Sbjct 888 GTTTCTAAGTTACCCCACGAGCAAGAAAACTTTGAACAAGTGCCAACTTACTCTATTAAG 947 Query 1014 GACTTCTTCTTCCGAAAATGGGCTTTTC-GTAGGATTTTAGTTGTTATGATCATAATGTT 1072 |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 948 GACTTCTTCTTCCGAAAATGGGCTTTTCAG-AGGATTTTAGTTGTTATGATCATAATGTT 1006 Query 1073 TGGGTTGGGAATATCGTATTACGGCGTTCCTTTAGCAGCTAGAGACATAGACGTCAACAT 1132 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1007 TGGGTTGGGAATATCGTATTACGGTGTTCCTTTAGCAGCTAGAGACATAGACGTCAACAT 1066 Query 1133 CTACTTGAGTGAAACCCTAAATGCATTGGTGGAGTTGCCTACTTTTGTTATCACTCCGAT 1192 |||||||||||||||||||||||||||||||||| |||||||||| || |||||||| || Sbjct 1067 CTACTTGAGTGAAACCCTAAATGCATTGGTGGAGCTGCCTACTTTCGTCATCACTCCAAT 1126 Query 1193 CTTATTGGAGAGATTCAACAGAAGAAGCTCTGTTCTTGTGAATACCTTACTCGGTGGGGC 1252 |||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 1127 CTTATTGGAGAGATTCAACAGAAGAAGCTCTGTTCTAGTGAATACCTTACTTGGTGGGGC 1186 Query 1253 ATCAGGG-GTGCTCTGTTTCGTTCTCAGCATTCTCGG 1288 ||| ||| ||||||||||| ||||||||||| ||||| Sbjct 1187 ATC-GGGAGTGCTCTGTTTTGTTCTCAGCATCCTCGG 1222 Score = 678 bits (367), Expect = 0.0 Identities = 416/440 (95%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 1317 CTCGGAACATTCTTCTGCGCTAGAATCGGATTTAACCTTATGGCAGTTTTTATGGTTGAA 1376 |||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||| Sbjct 1218 CTCGGAACATTCTTCTGCGCAAGGATCGGATTCAACCTTATGGCAGTTTTTATGGTTGAA 1277 Query 1377 ATGTTTCCAACTTGTGTGAGAAGCTCGGCAACAATGATGTTTAGACAGGCTCTTGTCGTT 1436 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| Sbjct 1278 ATGTTTCCAACTTGTGTGAGAAGTTCGGCAACAATGATGTTTAGACAGGCTCTTGTTGTT 1337 Query 1437 GGAGGAGCTTGTTGTCCGCTAATTGCTTCGATTGGAAGATACATACCCTCAGTATCGTTT 1496 |||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||||| Sbjct 1338 GGAGGAGCTTGTTGTCCGTTAATTTCTTCGATTGGAAGATACATTCCGTCAGTATCGTTT 1397 Query 1497 GCGATTTTTGGAATTGCAATGTCTGGTTTAGGAATGTTCGTTTTGATTCTGCCTGAGACA 1556 ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 1398 GCGATTTTTGGAATTGCAATGTCAGGTTTAGGATTGTTCGTTTTGATTCTGCCTGAGACA 1457 Query 1557 AAAGGTTTGAGTCTCTGCGATTCGATGGAAGAACAAGAAAAGAGAGATCAAGCCGTAAAT 1616 |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1458 AAAGGTTTGAGTCTCTGCGACTCAATGGAAGAACAAGAAAAGAGAGATCAAGCCGTAAAC 1517 Query 1617 ACCAGCCATGTTTGCTGAGAGTTTAAGAGTTTGTTTAGCTCAAACATTCTCCATTTTCAT 1676 || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1518 ACTAGCCATGTTTGCTGAGAGTTTAAGAGTTTGTTTAGCTTAAACATTCTCCATTTTCAT 1577 Query 1677 ATGTTTTCTATTATGTGATGTTTGTCTTGATTTTA-A-GAGTAAACTATTTTAAGTTGTG 1734 |||||||| ||| |||||||||||||||||||||| | ||||||| ||||| ||||| || Sbjct 1578 ATGTTTTCAATTCTGTGATGTTTGTCTTGATTTTATAAGAGTAAAATATTTGAAGTTTTG 1637 Query 1735 TCAAGTAAAAACTAAAGAGT 1754 | |||||||||||||||||| Sbjct 1638 TTAAGTAAAAACTAAAGAGT 1657 > Ahg477106 jgi|Araly1|477106|fgenesh2_kg.2__2236__AT1G79410.1 Length=1750 Score = 802 bits (434), Expect = 0.0 Identities = 1161/1507 (77%), Gaps = 69/1507 (5%) Strand=Plus/Plus Query 151 TGACTTTCGACAAGATCGTCGAACAAAGTC-TATCAGATTTCGGATTCTGGCAATTTTTC 209 ||||||||||||||||| |||||||||| | | || ||||| ||||||| ||| || || Sbjct 105 TGACTTTCGACAAGATCCTCGAACAAAG-CTTGTCTGATTTTGGATTCTCGCAGTTCTTA 163 Query 210 CAGAT--TTCCCTCGTTGGACTAGCT-TTGCTCTTCGACGCTCAGCAGATATTCATCACC 266 ||||| || |||||||| || ||| | | ||| ||||| |||||||||||||||||| Sbjct 164 CAGATAGTT--CTCGTTGGGCTCGCTCTAAC-CTTTGACGCACAGCAGATATTCATCACC 220 Query 267 GTGTACACAGATGCTTATCCCACGTGGCACTGTCTTAACCACACGATCTGTGATCCTTCA 326 || | ||||||||| |||||||||||||||||||| ||||||||||||| |||| || Sbjct 221 GTCTTCACAGATGCATATCCCACGTGGCACTGTCTCGACCACACGATCTGCAATCCGGCA 280 Query 327 GCCTCCGACATCTGCAAGCTTCCAAGATCAGCTTGGGAATGGGACGGTGGCTCCCAGGGC 386 | |||| ||||| ||| |||| | ||||||||||| ||||||||||| | | |||| Sbjct 281 ACGACCGATATCTGTAAGATTCCCCGGTCAGCTTGGGAGTGGGACGGTGGTTTCAAGGGT 340 Query 387 AAATCCGTCATTTCCGAATTTGGCCTCGAGTGCTCGAGCTCTTTACTCAGAGGTATGCCT 446 ||||| |||||||| || || | ||||||||||| ||||| || | |||| || | || Sbjct 341 AAATCAGTCATTTCAGAGTTCGATCTCGAGTGCTCAAGCTCCTTCCGCAGAAGTCTACCA 400 Query 447 AGTTCTGCTTTCTACATCGGTGCCATTGTTGGAGGGTTTTTTCTT-GCTTTGATTCCAGA 505 ||||| |||| || | ||| | || |||||| || | |||| ||| |||| || || Sbjct 401 AGTTCAACTTTTTATGTGGGTTCTATCGTTGGA-GGAGTCGTCTTGGCTCTGATCCCTGA 459 Query 506 CGATTCCTTGGGTCGCAAGAAACTAGTTTTGTTCTCAACCTTTGCAATGTCAATCACTTC 565 || ||||||||| || ||| |||| |||| ||||| | ||||||||||| ||||| Sbjct 460 CGGTTCCTTGGGACGGAAGCAACTTCTTTTCTTCTCGAGTTTTGCAATGTCCCTCACTGG 519 Query 566 AATCTCTGTTATCTTCTCAACCAATGTATGGATTTA-TACATTCCTT-AAGTTTATCATT 623 |||||| || |||| || |||| ||||||| || | | || ||| || || | || Sbjct 520 AATCTCCATTTTCTTATCCTCCAACATATGGATCTACT-C-TTTCTTAAAATTCGTGATC 577 Query 624 GGATTTTCG--CGATCACAGACCT-GGTCATACGCGTTGGTTCTCATCAGTGAGCGAG-T 679 || ||||| || || |||| || || |||||||||| ||||| || |||||||||| | Sbjct 578 GG--TTTCGCCCGTTCCCAGA-CTGGGACATACGCGTTAGTTCTGATAAGTGAGCGAGTT 634 Query 680 CTCCACCAGATGGAGACCGA-GAGCTACGATGATTCCATTTACCCTATTCGTTTTAGGGT 738 | |||||| || |||||| | ||||||| |||||||| ||||| || || || ||||||| Sbjct 635 C-CCACCAAATTGAGACC-ACGAGCTACTATGATTCCGTTTACTCTGTTTGTGTTAGGGT 692 Query 739 TTATGTCGT-TGTCTGGAATCGCTTTCCTTGCACAAG-ATTCTTCATGG-AGATATCTAT 795 | ||||| | ||||||||||||||| ||||| | | | |||| ||| | || ||| | Sbjct 693 TCATGTC-TCTGTCTGGAATCGCTTACCTTG-TCCGGCACGCTTCCTGGAAAAT-TCTCT 749 Query 796 ATCTATACACATCAGTTCCAGC-GGTATTTTACTGTATCTTCCTCTACCTCTTCGCACTC 854 |||||| |||||| ||||| || || | | || |||| ||| |||| |||| || || Sbjct 750 ATCTATGCACATCCGTTCCTGCAGG-AATCCACAGTATTTTCATCTATTTCTTTGCCCTA 808 Query 855 GAATCGCCTCGGTGGCTTCACATGCAAGGAAAGGATAAAGAAGCCATTGATGTTCTCACA 914 || || || || ||||| || || |||| ||| | ||||||||||||| || |||| | Sbjct 809 GAGTCCCCGCGTTGGCTCCATTTGGAAGGTAAGAACGAAGAAGCCATTGAAGTGCTCA-A 867 Query 915 AA-GATGTCACC-G-AAGGAAAAAGCTTATTTGGAATCAGTGGT-TTCTAAGTTACCCCT 970 || ||| ||||| | || | |||| ||| |||||||| || | ||||| |||||| | Sbjct 868 AAGGATTTCACCTGCAA--ACAAAGGTTACTTGGAATCCGT-ATCTTCTAGGTTACCTC- 923 Query 971 CAAGCAAGAAA-ACTTTGAACAAGCGCCAA-CTTACTCGATTAAGGACTTCTTC-TTCCG 1027 ||| |||||| || | || ||| | ||| | ||||| || |||||||| ||| || | Sbjct 924 CAA--AAGAAACAC-TAGACCAAACTTCAAGC-TACTCCATCAAGGACTTATTCATT-AG 978 Query 1028 AAAATGGGCTTTTCGTAGGA-TTTTAGTTGTTATGATCATAATGTTTGGGTTGGGAATAT 1086 |||||||||||||| | || | | ||||||||||||||||||||||||||||||| | Sbjct 979 AAAATGGGCTTTTC-AAAGAGTCACACTTGTTATGATCATAATGTTTGGGTTGGGAATGT 1037 Query 1087 CGTATTACGGCGTTCCTTTAGCAGCTAGAGACATAGACGTCAACATCTACTTGAGTGAAA 1146 | ||||| || ||||| ||||| | |||||||||| | || ||||| || ||||| ||| Sbjct 1038 CCTATTATGGAGTTCCATTAGCGGTTAGAGACATAAAAGTGAACATTTATTTGAGCGAAG 1097 Query 1147 CCCTAAATGC-ATTGGTGGAGTTGCCTACTTTTGTTATCACTCCGATCTTATTGGAGAGA 1205 ||||||| || || ||||||||| || || |||||| | || ||||| || | |||| | Sbjct 1098 CCCTAAACGCCAT-GGTGGAGTTACCAACATTTGTTGTTACACCGATATTGCTCGAGAAA 1156 Query 1206 TTCAACAGAAGAAGCTCTGTTCTTGTGAATACCTTACTCGGTGGGGCATCAGGGGTGCTC 1265 |||| ||| ||||||||||| ||||| ||| |||| | || || |||||||| |||||| Sbjct 1157 TTCAGCAGGAGAAGCTCTGTGCTTGTAAATTGCTTAATTGGAGGAGCATCAGGAGTGCTC 1216 Query 1266 TGTTTCGTTC-TCAGCATTCT-CGGCAAAACAGAGATCGCGTTT-GC-CTTCGAACTCGG 1321 ||||||| | | ||| || | ||| | |||| | ||||| ||| || || ||||||||| Sbjct 1217 TGTTTCGC-CATGAGCCTT-TACGGGAGAACAAAAATCGC-TTTCGCTCT-CGAACTCGG 1272 Query 1322 AACATTCTTCTGCGCTAGAATCGGATTTAACCTTA-TGGCAGTTTTTATGGTTGAAATGT 1380 | ||||||| |||||| || ||||| || ||| |||| |||| ||||||||| | | Sbjct 1273 TTCTTTCTTCTTCGCTAGGATTGGATTCAAT-TTAATGGCGGTTTATATGGTTGAGCTAT 1331 Query 1381 TTCCAACTTGTGTGAG-AAGCTCGGCAACAATGATGTTTAGACAGGCTCTTGTCGTTGGA 1439 | || || || ||||| || || ||||||||||| ||||||| || ||||| |||||| Sbjct 1332 TCCCTACATGCGTGAGGAATAGCG-CAACAATGATGCTTAGACAAGCGCTTGTGGTTGGA 1390 Query 1440 GGAGCTTGTTGTCCGCTAATTGCTTCGATTGGAAGATACATACCCTCAGTATCGTTT-GC 1498 ||||||||||| || || ||||||||| |||||||| | || || ||| | || ||| || Sbjct 1391 GGAGCTTGTTGCCCACTCATTGCTTCGCTTGGAAGAAATATTCCGTCACTCTC-TTTCGC 1449 Query 1499 GATTTTTGGAATTGCAATGTCTGGTTTAGGAATGTTCGTTTTGATTCTGCCTGAGACAAA 1558 | |||| ||| |||||||||| ||| | || | |||| || |||| |||||||| || Sbjct 1450 GGTTTTCGGATTTGCAATGTCGGGTCTCGGGTTATTCGCGCTGCTTCTTCCTGAGACCAA 1509 Query 1559 AGGTTTGAGTCTCTGCGATTCGATGGAAGAACAAGAA-AAGAGAGATCAAGCCGTAAATA 1617 ||| | ||||| || ||| | |||||||||||||| || ||||| |||||| | || | Sbjct 1510 AGGGTCAAGTCTTTGTGATACAATGGAAGAACAAGAGCAA-AGAGACCAAGCCTTGAAGA 1568 Query 1618 CCAGCCA 1624 | ||||| Sbjct 1569 CTAGCCA 1575 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 65819943360 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5