BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G16380.1 Length=2358 Score E Sequences producing significant alignments: (Bits) Value Ahg312615 jgi|Araly1|312615|fgenesh1_pm.C_scaffold_1001395 3790 0.0 Ahg909571 jgi|Araly1|909571|Al_scaffold_0002_2652 1314 0.0 > Ahg312615 jgi|Araly1|312615|fgenesh1_pm.C_scaffold_1001395 Length=2358 Score = 3790 bits (2052), Expect = 0.0 Identities = 2259/2361 (96%), Gaps = 6/2361 (0%) Strand=Plus/Plus Query 1 ATGGATCCAAAGATGTTGTTTTGTTTGCCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1 ATGGATCCAAAGATGTTGTTTTGTTTACCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60 Query 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTATTCCTA 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTCTTCCTT 120 Query 121 AAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGTTTG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 121 AAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGTTTG 180 Query 181 CTCACAATAATCCGCAAAGTCCACGAATTTTTCCTCCAGAAAGATTCAGCAAGCTATTAC 240 |||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| Sbjct 181 CTCACAATAATCCGCAAAGTCCACGAGTTCTTCCTCCAGAAAGATTCAGCGAGCTATTAC 240 Query 241 ATCTTTTTCTCATTCCTTTTACGAACAGCCTTT-GTGTTCTTGATCGGTCTCGAGATCGA 299 ||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| Sbjct 241 ATCTTTTTCTCATTCGTTTTACGAACA-TCTTTCATGTTCTTGATCGGTCTCGAGATCGA 299 Query 300 TCTTGACTTCATGAAACGAAACTTGAAGAACTCCATTGTCATAACTTTGGGCTCCTTAGT 359 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | Sbjct 300 TCTTGACTTCATAAAACGAAACTTAAAGAACTCCATTGTCATAACTTTGGGCTCCTTACT 359 Query 360 CATTTCTGGCATCATCTGGCTCCCTTTCCTCTGGTTTCTCATCCGTTTCATGCAGATCAA 419 || ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| Sbjct 360 CACCTCTGGCATCATCTGGCTCCCTTTCCTCTGGTTTATCATCCATTTCATGCAGATCAA 419 Query 420 AGGCGATTTCTTAACATTTTACTTAGCCTTCCTCATTACCTTGTCCAACACGGCAGCTCC 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 420 AGGCGATTTCTTAACATTTTACTTAGCCTTCCTCATTACCTTGTCCAACACGGCAGCTCC 479 Query 480 TGTCGTCATCCGTTCGATCATCGATTGGAAACTGCACACATCTGAGATCGGACGGCTAGC 539 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 480 TGTCGTCATCCGTTCGATCATCGATTGGAAACTCCACACATCTGAGATCGGACGGCTAGC 539 Query 540 AATCTCATGCGGATTGTTCATAGAGATAACCAACATATTTATCTACACTATCGTCCTTTC 599 ||||||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 540 AATCTCATGTGGATTGTTCATCGAGATAACCAACATATTTCTCTACACTATCGTCCTTTC 599 Query 600 TTTCATCTCCGGGACTATGACTGCTGATATTTTTATCTACTCATTTGCCACAGGAGTTAT 659 ||||||||| ||||||||||| || ||||||||||||||| |||||||||| |||||||| Sbjct 600 TTTCATCTCAGGGACTATGACCGCCGATATTTTTATCTACACATTTGCCACCGGAGTTAT 659 Query 660 AATCTTGACTAATAGATTCTTAGCTTCATGGCTCCCAAAAAGAAACCCTAAAGAGAAATA 719 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 660 AATCTTGATTAATAGATTCTTAGCTTCATGGCTCCCAAAAAGAAACCCTAAAGAGAAATA 719 Query 720 TCTCTCCAAAGCTGAAACGCTTGCTTTCATCATCCTTATTCTAATCATCGCGTTAACCAT 779 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 720 TCTCTCCAAAGCTGAAACGCTTGCTTTCTTCATCATTATTCTAATCATCGCGTTAACCAT 779 Query 780 CGAATCCAGCAACTTAAACTCAACGCTTTTTGTGTTTATCATCGGATTAATGTTTCCAAG 839 |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| || Sbjct 780 TGAATCCAGCAACTTAAACTCCACGCTTTTTGTGTTTTTCATCGGATTAATGTTTCCGAG 839 Query 840 AGAAGGAAAAACTTACAGAACGTTGATCCAACGGTTGAGTTACCCGATTCACGAGTTTGT 899 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 840 AGAAGGAAAAACTTACAGAACGATGATCCAACGGTTGAGTTACCCGATTCACGAGTTTGT 899 Query 900 CCTTCCGGTTTACTTTGGTTACATCGGATTTAGATTCAGCGTCAATTCGTTAACCAAACG 959 |||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 900 TCTTCCGGTTTACTTTGGTTACATCGGGTTTAGATTTAGCGTGAATTCGTTAACCAAACG 959 Query 960 CCACTACCTCGTCCTTGGTATGACTGTGGCTTTAAGCCTACTGGGGAAGCTTCTAGGAGT 1019 ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| Sbjct 960 CCACTACCTCGTCCTTGCTATGACAGTGGCTTTAAGCCTACTGGGGAAGCTTCTAGGAGT 1019 Query 1020 TTTATTCGCTTGTTCATTCTTGAAGATCCCAAAGCAGTATTGGCTTTTCTTGTCAACCAT 1079 ||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||| || Sbjct 1020 TTTATGCGCTTGTTCATTCCTAAAGATCCCAAAGAAGTATTGGCTTTTCTTGTCAACTAT 1079 Query 1080 GCTTTCCGTCAAAGGTCATATAGGTCTTGTTCTTCTCGACTCTAACTTGATGTACAAGAA 1139 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1080 GCTTTCCGTCAAAGGTCATATAGGTCTTGTTCTTCTCGACTCTAACTTGATTTACAAGAA 1139 Query 1140 ATGGTTTACTCCGGTAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTTGTT 1199 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1140 ATGGTTTACTCCGGTAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTTGTT 1199 Query 1200 AAGCGGAGTTATAACATCTTTGTTGCTTAGAAGT-CAAGAAAAGAGTTTCGCACATATAA 1258 |||||||||||| || ||||||||||||||| || |||||||||||||||||||| |||| Sbjct 1200 AAGCGGAGTTATGACGTCTTTGTTGCTTAGA-GTGCAAGAAAAGAGTTTCGCACACATAA 1258 Query 1259 AAACATCACTTGAGTTATTTGACACTACCGAGGAGCTACGAGTGTTGACGTGCGTCTATG 1318 |||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||| Sbjct 1259 AAACATCACTTGAGTTTTTTGACACTAAAGAGGAGTTACGAGTGTTGACGTGCGTCTATG 1318 Query 1319 GCGTTCGTCATGCTCGTGGATCGATCTCTTTAGTCTCTGCTCTAAGTGGCTTTTCTCCTG 1378 | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| Sbjct 1319 GTGTTCGTCATGCTCGTGGATCAATCTCTTTAGTCTCTGCTCTAAGTGGCTTCTCTCCTG 1378 Query 1379 GAACTTCTTCTTCGCCGTTCACGCCTTACCTTATGCACCTCATACCGCTCCCGAAGAAGC 1438 || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1379 GAGCTTCTTCTTCGCCGTTCACGCCTTATCTTATGCACCTCATACCGCTCCCGAAGAAGC 1438 Query 1439 GGAAAACTGAATTGTTGTACCACGAATTAGACGAAGATGCAGGAAATTCCAACGGCGGAG 1498 ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 1439 GGAAAACGGAATTGTTGTACCACGAATTAGACGAAGATGGAGGAAATTCCAACGGTGGAG 1498 Query 1499 ACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTTTACTA 1558 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1499 ACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTTTACTA 1558 Query 1559 GAGACAGAAAAATAATGGTCCGGCAGGTGAAACTTGTGGCGCCGATGGAGAATATGCACG 1618 |||||||||||| ||| ||||||| |||||||| ||||| |||||||||| |||||||| Sbjct 1559 AAGACAGAAAAATCATGATCCGGCAAGTGAAACTCGTGGCACCGATGGAGACTATGCACG 1618 Query 1619 AAGAGATCTGTAACGCCACTGAAGATCTTCGTGTATCGATCGTGTTTCTACC-TTTCCAT 1677 |||||||||||||||| |||||||||||||| || ||||| |||||||| || |||| || Sbjct 1619 AAGAGATCTGTAACGCGACTGAAGATCTTCGCGTCTCGATTGTGTTTCTTCCCTTTC-AT 1677 Query 1678 AAACACCAGAGGATCGACGGGAAAACCACGAATGACGGGGAAGTTTTTCGACATATGAAC 1737 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1678 AAACACCAGAGGATCGACGGGAAAACCACCAATGACGGGGAAGTTTTTCGACATATGAAC 1737 Query 1738 CGGAAGGTTCTAAAGCAAGCTCAATGTTCGATTGGTATCTTTGTGGATAGAAACATAACA 1797 ||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||| Sbjct 1738 CGGAAGGTTCTAAAGCAAGCTCAGTGTTCGATAGGTATCTTTGTTGATAGAAACATAACC 1797 Query 1798 GGGTTTCACCAGCTTCACGGGTCTGATTCGGTACAACACGTTGCTGCATTGTTCTTCGGT 1857 |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| Sbjct 1798 GGGTTTCACCAGCTTCACGGCTCTGATTCGGTACAACACGTTGCGGCGTTGTTCTTCGGT 1857 Query 1858 GGTCCTGATGATCGTGAGGCTCTGTCCTTGTGCAAGTGGCTTACCAATAACTCTCAGATT 1917 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 GGTCCTGATGACCGTGAGGCTCTGTCCTTGTGCAAGTGGCTTACCAATAACTCTCAGATT 1917 Query 1918 CACCTCACTGTCATACAGTTTGTGGCGGATGACTCAAAGACAGAGAAAATTGTCGGAGAC 1977 ||||||||||| |||||||||||||| ||||||||||||| |||||| |||| || ||| Sbjct 1918 CACCTCACTGTAATACAGTTTGTGGCCGATGACTCAAAGATGGAGAAACTTGTTGGTGAC 1977 Query 1978 GCGGTGACCAAGGAAAACAACGAAGTATTCTTGGAGATTGTTAGTGAAGATCAAACCGAA 2037 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1978 GCGGTGACCAAGGAAAACAACGAAGTATTCTTGGAGATTGTTAGTAAAGATCAAACCGAA 2037 Query 2038 AACGAAACAGATCGAATCTTCTTAGAAGAATTCTATCACAGATTTGTGACGACGGGGCAA 2097 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 2038 GACGAAACAGATCGAATCTTCTTAGAAGAATTCTATAACAGATTTGTGACGACGGGGCAA 2097 Query 2098 GTTGGATTCATAGAGAAGCGAGTGAGCAACGGAATGCAGACGCTGACAATTCTAAGAGAG 2157 ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| Sbjct 2098 GTTGGATTCATAGAGAAGCGAGTGAGCAACGGAGTGCAGACGCTGACAATTCTGAGAGAG 2157 Query 2158 ATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGATTGTCCAATGACT 2217 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2158 ATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGATTGTCCAATGACT 2217 Query 2218 TCAGGAATGAATGATTGGGAAGAGTGTCCGGAATTAGGAACGGTCGGAGATTTCTTGGCT 2277 ||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2218 TCAGGAATGAACGATTGGGAAGAGTGTCCGGAATTAGGAACAGTCGGAGATTTCTTGGCT 2277 Query 2278 TCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACATAGAAACTCATTT 2337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2278 TCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACATAGAAACTCATTT 2337 Query 2338 GATAGCTTTGTAGATGAATAG 2358 ||||||||||||||||| ||| Sbjct 2338 GATAGCTTTGTAGATGATTAG 2358 > Ahg909571 jgi|Araly1|909571|Al_scaffold_0002_2652 Length=2352 Score = 1314 bits (711), Expect = 0.0 Identities = 1886/2434 (77%), Gaps = 158/2434 (6%) Strand=Plus/Plus Query 1 ATGGATCCAAAGATGTTGTTTTGTTTGCCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60 |||||||||||| |||||||||| || || ||||||||| | | |||||||| || ||| Sbjct 1 ATGGATCCAAAGTTGTTGTTTTGCTTACCTCAAGGAGATGAACTCTTTAATCCCCTTAAT 60 Query 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTA-TTCCT 119 || ||||||||||||||||||||||||||||||||||||||||| ||||| || ||| | Sbjct 61 ACCATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTGTTCTATCTCCTTCTT 120 Query 120 AAAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGT-- 177 ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 121 AAA-CCCTGTGGCCAAGCTGGTCCCGTTGCCCAGATTCTTGCTGGGATTGTGTTGAGTCC 179 Query 178 T-T---GCTCACAATAATC-CGCAAAGTCCACGAATTTTTCCTCCAGAAAGATTCAGCAA 232 | | |||| ||| ||| | ||||| | |||||||||||||||||| | ||||| Sbjct 180 TGTTCTGCTCTCAAGAATATCT-AAAGTTAAGGAATTTTTCCTCCAGAAAAACGCAGCA- 237 Query 233 GCT-ATTACATCTTT-TTCTCATTC-CTTTTACGAACAGCCTTTG-TGTTCTTGATCGGT 288 | | ||||| ||||| ||||| ||| || | ||| ||| | ||| |||||||||| ||| Sbjct 238 GATTATTAC-TCTTTCTTCTCGTTCGCTCT-ACGGACATC-TTTCATGTTCTTGATTGGT 294 Query 289 CTCGA-GATCGATCTTGACTTCATGA-AACGAAACTTGAAGAA--CT-CCATTGTCATAA 343 || || | | ||||| | ||||||| || ||| || ||||| || || | | |||| Sbjct 295 CTTGAAG-TGGATCTACATTTCATGAGAAGGAAT-TTCAAGAAAGCTGCCGT-G--ATAA 349 Query 344 CTTTGGGCTCCTTAGTCATTT-CTGGCATCATCTGGCTCCCTTTCCTCTGGT-TTCT-CA 400 | ||| |||| || | ||| | | | || || | || ||| ||| | | || | || Sbjct 350 CCTTGAGCTCATTCTTGGTTTGC-GCCCTCCTCAGTTTCGCTT-CCT-TAATGTTATTCA 406 Query 401 TCCGTTTCAT-GCAGATCAAAGGCGATTTCTTAACATTTTACTTAGC-CTTCCTCATTAC 458 ||| ||| | | |||||||| || | ||| || |||| ||| | |||| || |||| Sbjct 407 TCCCTTTGTTTGG-GATCAAAGAAGACTACTTTACGTTTTTCTTGGTTCTTC-TCGTTAC 464 Query 459 CTTGTCCAACACGGCAGCTCCTGTCGTCA-TCCGTTCGATCA-TCGATTGGAAACTGCA- 515 |||| | ||||||||| |||||||||| | ||||||| ||| | ||||||||||| || Sbjct 465 CTTGACTAACACGGCATCTCCTGTCGT-AGTCCGTTCAATCGCT-GATTGGAAACT-CAA 521 Query 516 CACATCTGAGATCGGACGGCT-AGCAATCTCATGCG-GATTGTTCATAGAGATAACCAA- 572 |||||||||||||||||| || | |||||||||| | | |||||||| || || | ||| Sbjct 522 CACATCTGAGATCGGACGACTGA-CAATCTCATGTGCG-TTGTTCATCGA-ATTATCAAA 578 Query 573 CATATTTATCTACACTATCGTCCTTTCTTTCATCTCCGGGA-CTATGACT-GCTGA-TAT 629 | | || |||||||| | || | | |||||||| || | |||||| | | | | | | Sbjct 579 CGTGGTTCTCTACACTGTAATCATCGCGTTCATCTCTGG-ATCTATGA-TAGGT-ACTCT 635 Query 630 TTTTATCTACTCATTT-GCCACAGGAGTTA-TAATCTTGA-CTAATAGATTCTTAGCTTC 686 || ||| || ||| || || ||| | ||||||||| | || || ||||||||| | Sbjct 636 CTTCCTCTT-TCTTTTCGCAACCGGA-TCCCTAATCTTGATC-AACAGTTTCTTAGCTCC 692 Query 687 ATGGCTCCCAAAAAGAAACCCTAAAGAGAAATATCTCTCCAAAG-CTGAAACGCTTGCTT 745 |||||| ||||| || |||||||||||||| || ||||| |||| ||||||| || | || Sbjct 693 ATGGCTTCCAAAGAGGAACCCTAAAGAGAAGTACCTCTC-AAAGGCTGAAACTCTAGTTT 751 Query 746 TCATCATCCTTA-TTCTAATCATCGCGT-TAACCATCGAATCC-AGCAACT-TAAACTCA 801 || ||||| || |||| ||||||| || |||| ||||||||| | | | | | || || Sbjct 752 TCTTCATC-TTCCTTCTCATCATCG-GTATAACTATCGAATCCTA-CGA-TGTCAATTCC 807 Query 802 ACGCTTTTTGTGTTT-ATCATCGGATTAATGTTTCCAAGAGAAGGAAAAACTTACAGAAC 860 || ||| || ||| | ||| ||| ||||||||||| || ||||||| ||| ||||||| Sbjct 808 TCGGTTTCGGT-TTTCACCATTGGAATAATGTTTCCACGACAAGGAAAGACTCACAGAAC 866 Query 861 GTTGATCCAACGG-TTGAGTTACCCGATTCACGAGTTTGTCCTTCCGGTTTACTTTGGTT 919 |||||| |||||| || ||||| ||||| ||||||||||| ||||| ||||||||||||| Sbjct 867 GTTGATTCAACGGCTT-AGTTATCCGATCCACGAGTTTGTTCTTCCCGTTTACTTTGGTT 925 Query 920 ACATCGGATTTAGATTCAGCGTCAATT-CGTTAACCAAACGCCACTACCTCG-TCCTTGG 977 |||| ||||| ||||||||| ||| | ||||||||||||| ||||||| || | | Sbjct 926 ACATTGGATTCAGATTCAGCATCA-TCGCGTTAACCAAACGATTTTACCTCGGTC-TAGT 983 Query 978 TATGACT-GTGGCTT-TAAGCC-TACTGGGGAAGCTTCTAGGAGTTTTATTCGCTTGTTC 1034 ||| | | || || ||| || || | ||||| || | || || || ||||||| Sbjct 984 TATTA-TAGTAA-TTGTAA-CCATAGTTGGGAAATTTATTGGTGTAATAAGCGCTTGT-- 1038 Query 1035 AT-T-CTTGAAGATCCCAAAGCAGTATTGGCTTTTCTTGTCAACCATGCTTTCCGTCAAA 1092 || | | |||||||||| ||| |||||||||||||||| | ||||| || || || ||| Sbjct 1039 ATGTACCTGAAGATCCCTAAGAAGTATTGGCTTTTCTTACCCACCATTCTCTCTGTTAAA 1098 Query 1093 GGTCATATAGGTCTTGTTCTTCTCGACTCTAACT--TGATGTACAAGAAATGGTTTACTC 1150 || ||| | |||||| ||||||| ||||| |||| | | | |||||||||| || | Sbjct 1099 GGCCATGTGGGTCTTCTTCTTCTAGACTCAAACTACTCC-GAA-AAGAAATGGTGGAC-C 1155 Query 1151 -CGG-TAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTT-GTTAAGCGGAG 1207 | || ||||||||||| | || || ||| | ||||||| ||| | || |||||| | Sbjct 1156 ACAACTA-TTCATGATATGATGGTGGCTGCTTTGGTGATCACGACGCTAGT-AAGCGGTG 1213 Query 1208 TTATAACATCTTTGTTGCTTAGAAGTCAAGA-A-AAG-AGTTTCGC--ACATATAAAAAC 1262 || | | || || ||||||| ||| ||||| | ||| | ||| || || | || | | Sbjct 1214 TTCTGGCGTCGTTCTTGCTTA-AAG-CAAGAGAGAAGGACTTT-GCTTACG-AGAAGA-C 1268 Query 1263 ATCACTTGAGTTATTTGA-CACTACCGAGGAGCTACGAGTGTTGA-CGTGCGTCTATGGC 1320 || ||||| | | | ||| | |||||| |||| || || | | |||| |||||| Sbjct 1269 TTCGCTTGAATC-TCACAACACGAACGAGGAATTACGCGTTTT-ATCATGCGCCTATGGA 1326 Query 1321 GTTCGTCATGCTCGTGGAT-CGATCTCT-TTAGTCTCTGCTCTA-AGTGGCTTTTCTCCT 1377 || ||||||||||| || | |||||||| || ||||| || || || || || ||| | Sbjct 1327 GTCCGTCATGCTCGCGG-TGCGATCTCTCTT-GTCTCGGC-CTTGAGCGG-TT--CTCGT 1380 Query 1378 GGAACTTCTTCTTCGCCGTTCACGCCT-TACCTTATGCACCTCATACCGCTCCCGAAGAA 1436 ||| | ||| | | | |||||| ||| | | |||||||||| |||| ||||| ||||| Sbjct 1381 GGAGCCTCTGAT-C-C-GTTCACACCTCTGC-TTATGCACCTTGTACCCCTCCCCAAGAA 1436 Query 1437 GCGGAAAA-CTGAATTGTTGTACCACGAATTA-GACGAAGATGCAGGAAATTCCAACGGC 1494 || |||| | |||||| |||| || ||| | |||||||||| ||| ||| | || || Sbjct 1437 ACG-AAAATCGGAATTGATGTATCATGAAC-ACGACGAAGATGGAGGCAATGCGAATGGA 1494 Query 1495 GGA-GACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTT 1553 | | ||||| | || ||||| || ||||| |||||||||| || ||||| |||||||| Sbjct 1495 G-ATGACGA--ATTT-GGGACCAACGAAGGTTTAGAGATCAACGATTCGATTGATTCGTT 1550 Query 1554 TACTAGAGACAGAAAAATAATGGTCCGGCAGGTGAAACTTGTGGCGCCGATGGAGAATAT 1613 | | | |||||| ||||| || ||| || |||||||| ||| ||| |||| ||||| Sbjct 1551 TGCCAAAGACAGCAAAATCTTGATCCAACAAGTGAAACTCGTGACGCAGATGCTTAATAT 1610 Query 1614 GCACGAAGAGATCTGTAACGCCACTGAAGATCTTCGTGTATCGATCGTGTTTCTACC-TT 1672 |||||||||||| |||||||| || || |||||||| || ||||| |||||||| || || Sbjct 1611 GCACGAAGAGATATGTAACGCAACAGAGGATCTTCGAGTTTCGATTGTGTTTCTTCCGTT 1670 Query 1673 TCCATAAACACCAGAGGATCGACGGGAAAACCACGAATGACGGGGAAGTTTTTC-GACAT 1731 || ||||||||||||| ||||| ||||| || || || || |||||| |||| | |||| Sbjct 1671 TC-ATAAACACCAGAGAATCGATGGGAAGACTACAAACGATGGGGAACTTTT-CAGACAG 1728 Query 1732 ATGAACCGGAAGGTTCTAAAGCAAGCTCAATGTTCGATTGGTATCTTTGTGGATAGAAAC 1791 |||||||| || ||||||| ||| |||| |||||||||||||| |||||||| ||||| Sbjct 1729 ATGAACCGTAATGTTCTAAGGCACGCTCCGTGTTCGATTGGTATTTTTGTGGACCGAAAC 1788 Query 1792 ATAACAGGGTTTCACCAGCTTCACGGGTCTGATTCGGTACAACACGTTGCTGCATTGTTC 1851 ||||| || ||||| |||| ||||||| |||||| ||||||||||| || ||||||||| Sbjct 1789 ATAACCGGATTTCAGCAGCCGCACGGGTTTGATTCTGTACAACACGTCGCAGCATTGTTC 1848 Query 1852 TTCGGTGGTCCTGATGATCGTGAGGCTCTGTCCT-TGTGCAAGTGGCTTACCAATAACTC 1910 || |||||||| ||||||||||||||||| | || ||||||||||||| | || ||| | Sbjct 1849 TTTGGTGGTCCGGATGATCGTGAGGCTCT-TGCTCTGTGCAAGTGGCTCGCGAACAACAC 1907 Query 1911 TCAGATTCACCTCACTGTCATACAGTTTGTGGCGGATGACTCAAAGACAGAGAAAATTGT 1970 || |||||| ||||| || |||||||| || | || || |||||| |||||| ||| Sbjct 1908 TCTGATTCATCTCACAGTTATACAGTTCGTATCCGAGGAATCAAAGGCAGAGACTCCTGT 1967 Query 1971 CGGAGACGCGGTGAC-CAAGGAAAACAACGAAGTATTCTTGGA-GATTGTTAGTGAAG-A 2027 ||| | ||| |||| | || | || || || || ||| |||| | || | | |||| | Sbjct 1968 TGGAAATGCGATGACACGAG-ATAATAAAGAGGTTTTCATGGAAG-TTCTG-G-GAAGGA 2023 Query 2028 -TCAAACCGAA-AACGAAACAGATCGAATCTTCTTAGAAGAATTCTATCACAGATTTGTG 2085 |||||| ||| || ||||||||||| | ||||||||||||||||||| |||||||||| Sbjct 2024 ATCAAACTGAACAA-GAAACAGATCGGAGCTTCTTAGAAGAATTCTATAACAGATTTGTA 2082 Query 2086 ACGACGGGGCAAGTTGGATTCATAGAGAAGCGAGTGAGCAACGGAATGCAGACGCTGACA 2145 |||||||| ||||| || ||||||||||||| |||||||| ||| ||| |||||||| Sbjct 2083 ACGACGGGACAAGTGGGGTTCATAGAGAAGCTTGTGAGCAATGGACCGCACACGCTGACG 2142 Query 2146 ATTCTAAGAGAGATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGAT 2205 |||||||||||||| || ||||||||||||||||||||||| ||||| | |||||||||| Sbjct 2143 ATTCTAAGAGAGATTGGAGAGATGTATTCACTGTTTGTGGTCGGAAAGAGCAGAGGAGAT 2202 Query 2206 TGTCCAATGACT-TCAGGAATGAATGATTGGGAAGAGTGTCCGGAATTAGGAACGGTCGG 2264 || || ||||| | || |||||| |||||||||||||||||||| | ||||| ||||| Sbjct 2203 TGCCCTATGACGGTGAG-AATGAAAGATTGGGAAGAGTGTCCGGAGCTCGGAACTGTCGG 2261 Query 2265 AGATTTCTTGGCTTCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACA 2324 |||||||||||||| || || | |||||||||| || |||||||||||||||||||| Sbjct 2262 TGATTTCTTGGCTTCGTCTT-TA-G-ATGTAAATGCGTCAGTATTAGTAGTTCAAAGACA 2318 Query 2325 TAGAAACTCATTTGATAGCTTTGTAGATGAATAG 2358 ||| | ||| |||||||||| ||||||| ||| Sbjct 2319 AAGACATTCACATGATAGCTTTATAGATGATTAG 2352 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 88826451340 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5