BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16380.1
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312615 jgi|Araly1|312615|fgenesh1_pm.C_scaffold_1001395 3790 0.0
Ahg909571 jgi|Araly1|909571|Al_scaffold_0002_2652 1314 0.0
> Ahg312615 jgi|Araly1|312615|fgenesh1_pm.C_scaffold_1001395
Length=2358
Score = 3790 bits (2052), Expect = 0.0
Identities = 2259/2361 (96%), Gaps = 6/2361 (0%)
Strand=Plus/Plus
Query 1 ATGGATCCAAAGATGTTGTTTTGTTTGCCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGATCCAAAGATGTTGTTTTGTTTACCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60
Query 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTATTCCTA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTCTTCCTT 120
Query 121 AAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGTTTG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGTTTG 180
Query 181 CTCACAATAATCCGCAAAGTCCACGAATTTTTCCTCCAGAAAGATTCAGCAAGCTATTAC 240
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 181 CTCACAATAATCCGCAAAGTCCACGAGTTCTTCCTCCAGAAAGATTCAGCGAGCTATTAC 240
Query 241 ATCTTTTTCTCATTCCTTTTACGAACAGCCTTT-GTGTTCTTGATCGGTCTCGAGATCGA 299
||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 241 ATCTTTTTCTCATTCGTTTTACGAACA-TCTTTCATGTTCTTGATCGGTCTCGAGATCGA 299
Query 300 TCTTGACTTCATGAAACGAAACTTGAAGAACTCCATTGTCATAACTTTGGGCTCCTTAGT 359
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 300 TCTTGACTTCATAAAACGAAACTTAAAGAACTCCATTGTCATAACTTTGGGCTCCTTACT 359
Query 360 CATTTCTGGCATCATCTGGCTCCCTTTCCTCTGGTTTCTCATCCGTTTCATGCAGATCAA 419
|| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 360 CACCTCTGGCATCATCTGGCTCCCTTTCCTCTGGTTTATCATCCATTTCATGCAGATCAA 419
Query 420 AGGCGATTTCTTAACATTTTACTTAGCCTTCCTCATTACCTTGTCCAACACGGCAGCTCC 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 AGGCGATTTCTTAACATTTTACTTAGCCTTCCTCATTACCTTGTCCAACACGGCAGCTCC 479
Query 480 TGTCGTCATCCGTTCGATCATCGATTGGAAACTGCACACATCTGAGATCGGACGGCTAGC 539
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 480 TGTCGTCATCCGTTCGATCATCGATTGGAAACTCCACACATCTGAGATCGGACGGCTAGC 539
Query 540 AATCTCATGCGGATTGTTCATAGAGATAACCAACATATTTATCTACACTATCGTCCTTTC 599
||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 540 AATCTCATGTGGATTGTTCATCGAGATAACCAACATATTTCTCTACACTATCGTCCTTTC 599
Query 600 TTTCATCTCCGGGACTATGACTGCTGATATTTTTATCTACTCATTTGCCACAGGAGTTAT 659
||||||||| ||||||||||| || ||||||||||||||| |||||||||| ||||||||
Sbjct 600 TTTCATCTCAGGGACTATGACCGCCGATATTTTTATCTACACATTTGCCACCGGAGTTAT 659
Query 660 AATCTTGACTAATAGATTCTTAGCTTCATGGCTCCCAAAAAGAAACCCTAAAGAGAAATA 719
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AATCTTGATTAATAGATTCTTAGCTTCATGGCTCCCAAAAAGAAACCCTAAAGAGAAATA 719
Query 720 TCTCTCCAAAGCTGAAACGCTTGCTTTCATCATCCTTATTCTAATCATCGCGTTAACCAT 779
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 720 TCTCTCCAAAGCTGAAACGCTTGCTTTCTTCATCATTATTCTAATCATCGCGTTAACCAT 779
Query 780 CGAATCCAGCAACTTAAACTCAACGCTTTTTGTGTTTATCATCGGATTAATGTTTCCAAG 839
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||
Sbjct 780 TGAATCCAGCAACTTAAACTCCACGCTTTTTGTGTTTTTCATCGGATTAATGTTTCCGAG 839
Query 840 AGAAGGAAAAACTTACAGAACGTTGATCCAACGGTTGAGTTACCCGATTCACGAGTTTGT 899
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 840 AGAAGGAAAAACTTACAGAACGATGATCCAACGGTTGAGTTACCCGATTCACGAGTTTGT 899
Query 900 CCTTCCGGTTTACTTTGGTTACATCGGATTTAGATTCAGCGTCAATTCGTTAACCAAACG 959
|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct 900 TCTTCCGGTTTACTTTGGTTACATCGGGTTTAGATTTAGCGTGAATTCGTTAACCAAACG 959
Query 960 CCACTACCTCGTCCTTGGTATGACTGTGGCTTTAAGCCTACTGGGGAAGCTTCTAGGAGT 1019
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct 960 CCACTACCTCGTCCTTGCTATGACAGTGGCTTTAAGCCTACTGGGGAAGCTTCTAGGAGT 1019
Query 1020 TTTATTCGCTTGTTCATTCTTGAAGATCCCAAAGCAGTATTGGCTTTTCTTGTCAACCAT 1079
||||| ||||||||||||| | |||||||||||| |||||||||||||||||||||| ||
Sbjct 1020 TTTATGCGCTTGTTCATTCCTAAAGATCCCAAAGAAGTATTGGCTTTTCTTGTCAACTAT 1079
Query 1080 GCTTTCCGTCAAAGGTCATATAGGTCTTGTTCTTCTCGACTCTAACTTGATGTACAAGAA 1139
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1080 GCTTTCCGTCAAAGGTCATATAGGTCTTGTTCTTCTCGACTCTAACTTGATTTACAAGAA 1139
Query 1140 ATGGTTTACTCCGGTAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTTGTT 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ATGGTTTACTCCGGTAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTTGTT 1199
Query 1200 AAGCGGAGTTATAACATCTTTGTTGCTTAGAAGT-CAAGAAAAGAGTTTCGCACATATAA 1258
|||||||||||| || ||||||||||||||| || |||||||||||||||||||| ||||
Sbjct 1200 AAGCGGAGTTATGACGTCTTTGTTGCTTAGA-GTGCAAGAAAAGAGTTTCGCACACATAA 1258
Query 1259 AAACATCACTTGAGTTATTTGACACTACCGAGGAGCTACGAGTGTTGACGTGCGTCTATG 1318
|||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||
Sbjct 1259 AAACATCACTTGAGTTTTTTGACACTAAAGAGGAGTTACGAGTGTTGACGTGCGTCTATG 1318
Query 1319 GCGTTCGTCATGCTCGTGGATCGATCTCTTTAGTCTCTGCTCTAAGTGGCTTTTCTCCTG 1378
| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 1319 GTGTTCGTCATGCTCGTGGATCAATCTCTTTAGTCTCTGCTCTAAGTGGCTTCTCTCCTG 1378
Query 1379 GAACTTCTTCTTCGCCGTTCACGCCTTACCTTATGCACCTCATACCGCTCCCGAAGAAGC 1438
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1379 GAGCTTCTTCTTCGCCGTTCACGCCTTATCTTATGCACCTCATACCGCTCCCGAAGAAGC 1438
Query 1439 GGAAAACTGAATTGTTGTACCACGAATTAGACGAAGATGCAGGAAATTCCAACGGCGGAG 1498
||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1439 GGAAAACGGAATTGTTGTACCACGAATTAGACGAAGATGGAGGAAATTCCAACGGTGGAG 1498
Query 1499 ACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTTTACTA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 ACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTTTACTA 1558
Query 1559 GAGACAGAAAAATAATGGTCCGGCAGGTGAAACTTGTGGCGCCGATGGAGAATATGCACG 1618
|||||||||||| ||| ||||||| |||||||| ||||| |||||||||| ||||||||
Sbjct 1559 AAGACAGAAAAATCATGATCCGGCAAGTGAAACTCGTGGCACCGATGGAGACTATGCACG 1618
Query 1619 AAGAGATCTGTAACGCCACTGAAGATCTTCGTGTATCGATCGTGTTTCTACC-TTTCCAT 1677
|||||||||||||||| |||||||||||||| || ||||| |||||||| || |||| ||
Sbjct 1619 AAGAGATCTGTAACGCGACTGAAGATCTTCGCGTCTCGATTGTGTTTCTTCCCTTTC-AT 1677
Query 1678 AAACACCAGAGGATCGACGGGAAAACCACGAATGACGGGGAAGTTTTTCGACATATGAAC 1737
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1678 AAACACCAGAGGATCGACGGGAAAACCACCAATGACGGGGAAGTTTTTCGACATATGAAC 1737
Query 1738 CGGAAGGTTCTAAAGCAAGCTCAATGTTCGATTGGTATCTTTGTGGATAGAAACATAACA 1797
||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 1738 CGGAAGGTTCTAAAGCAAGCTCAGTGTTCGATAGGTATCTTTGTTGATAGAAACATAACC 1797
Query 1798 GGGTTTCACCAGCTTCACGGGTCTGATTCGGTACAACACGTTGCTGCATTGTTCTTCGGT 1857
|||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||
Sbjct 1798 GGGTTTCACCAGCTTCACGGCTCTGATTCGGTACAACACGTTGCGGCGTTGTTCTTCGGT 1857
Query 1858 GGTCCTGATGATCGTGAGGCTCTGTCCTTGTGCAAGTGGCTTACCAATAACTCTCAGATT 1917
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GGTCCTGATGACCGTGAGGCTCTGTCCTTGTGCAAGTGGCTTACCAATAACTCTCAGATT 1917
Query 1918 CACCTCACTGTCATACAGTTTGTGGCGGATGACTCAAAGACAGAGAAAATTGTCGGAGAC 1977
||||||||||| |||||||||||||| ||||||||||||| |||||| |||| || |||
Sbjct 1918 CACCTCACTGTAATACAGTTTGTGGCCGATGACTCAAAGATGGAGAAACTTGTTGGTGAC 1977
Query 1978 GCGGTGACCAAGGAAAACAACGAAGTATTCTTGGAGATTGTTAGTGAAGATCAAACCGAA 2037
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1978 GCGGTGACCAAGGAAAACAACGAAGTATTCTTGGAGATTGTTAGTAAAGATCAAACCGAA 2037
Query 2038 AACGAAACAGATCGAATCTTCTTAGAAGAATTCTATCACAGATTTGTGACGACGGGGCAA 2097
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2038 GACGAAACAGATCGAATCTTCTTAGAAGAATTCTATAACAGATTTGTGACGACGGGGCAA 2097
Query 2098 GTTGGATTCATAGAGAAGCGAGTGAGCAACGGAATGCAGACGCTGACAATTCTAAGAGAG 2157
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 2098 GTTGGATTCATAGAGAAGCGAGTGAGCAACGGAGTGCAGACGCTGACAATTCTGAGAGAG 2157
Query 2158 ATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGATTGTCCAATGACT 2217
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 ATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGATTGTCCAATGACT 2217
Query 2218 TCAGGAATGAATGATTGGGAAGAGTGTCCGGAATTAGGAACGGTCGGAGATTTCTTGGCT 2277
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2218 TCAGGAATGAACGATTGGGAAGAGTGTCCGGAATTAGGAACAGTCGGAGATTTCTTGGCT 2277
Query 2278 TCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACATAGAAACTCATTT 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2278 TCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACATAGAAACTCATTT 2337
Query 2338 GATAGCTTTGTAGATGAATAG 2358
||||||||||||||||| |||
Sbjct 2338 GATAGCTTTGTAGATGATTAG 2358
> Ahg909571 jgi|Araly1|909571|Al_scaffold_0002_2652
Length=2352
Score = 1314 bits (711), Expect = 0.0
Identities = 1886/2434 (77%), Gaps = 158/2434 (6%)
Strand=Plus/Plus
Query 1 ATGGATCCAAAGATGTTGTTTTGTTTGCCAGAAGGAGATGCATTGTTTAATCCACTCAAT 60
|||||||||||| |||||||||| || || ||||||||| | | |||||||| || |||
Sbjct 1 ATGGATCCAAAGTTGTTGTTTTGCTTACCTCAAGGAGATGAACTCTTTAATCCCCTTAAT 60
Query 61 ACAATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTCTTCTACCTA-TTCCT 119
|| ||||||||||||||||||||||||||||||||||||||||| ||||| || ||| |
Sbjct 61 ACCATGTTTATTCAAATGGCTTGCATTCTCGTCTTCTCTCAATTGTTCTATCTCCTTCTT 120
Query 120 AAAACCCTGTGGCCAAGCCGGTCCCGTTGCCCAGATTCTCGCTGGGATTGTGTTGAGT-- 177
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AAA-CCCTGTGGCCAAGCTGGTCCCGTTGCCCAGATTCTTGCTGGGATTGTGTTGAGTCC 179
Query 178 T-T---GCTCACAATAATC-CGCAAAGTCCACGAATTTTTCCTCCAGAAAGATTCAGCAA 232
| | |||| ||| ||| | ||||| | |||||||||||||||||| | |||||
Sbjct 180 TGTTCTGCTCTCAAGAATATCT-AAAGTTAAGGAATTTTTCCTCCAGAAAAACGCAGCA- 237
Query 233 GCT-ATTACATCTTT-TTCTCATTC-CTTTTACGAACAGCCTTTG-TGTTCTTGATCGGT 288
| | ||||| ||||| ||||| ||| || | ||| ||| | ||| |||||||||| |||
Sbjct 238 GATTATTAC-TCTTTCTTCTCGTTCGCTCT-ACGGACATC-TTTCATGTTCTTGATTGGT 294
Query 289 CTCGA-GATCGATCTTGACTTCATGA-AACGAAACTTGAAGAA--CT-CCATTGTCATAA 343
|| || | | ||||| | ||||||| || ||| || ||||| || || | | ||||
Sbjct 295 CTTGAAG-TGGATCTACATTTCATGAGAAGGAAT-TTCAAGAAAGCTGCCGT-G--ATAA 349
Query 344 CTTTGGGCTCCTTAGTCATTT-CTGGCATCATCTGGCTCCCTTTCCTCTGGT-TTCT-CA 400
| ||| |||| || | ||| | | | || || | || ||| ||| | | || | ||
Sbjct 350 CCTTGAGCTCATTCTTGGTTTGC-GCCCTCCTCAGTTTCGCTT-CCT-TAATGTTATTCA 406
Query 401 TCCGTTTCAT-GCAGATCAAAGGCGATTTCTTAACATTTTACTTAGC-CTTCCTCATTAC 458
||| ||| | | |||||||| || | ||| || |||| ||| | |||| || ||||
Sbjct 407 TCCCTTTGTTTGG-GATCAAAGAAGACTACTTTACGTTTTTCTTGGTTCTTC-TCGTTAC 464
Query 459 CTTGTCCAACACGGCAGCTCCTGTCGTCA-TCCGTTCGATCA-TCGATTGGAAACTGCA- 515
|||| | ||||||||| |||||||||| | ||||||| ||| | ||||||||||| ||
Sbjct 465 CTTGACTAACACGGCATCTCCTGTCGT-AGTCCGTTCAATCGCT-GATTGGAAACT-CAA 521
Query 516 CACATCTGAGATCGGACGGCT-AGCAATCTCATGCG-GATTGTTCATAGAGATAACCAA- 572
|||||||||||||||||| || | |||||||||| | | |||||||| || || | |||
Sbjct 522 CACATCTGAGATCGGACGACTGA-CAATCTCATGTGCG-TTGTTCATCGA-ATTATCAAA 578
Query 573 CATATTTATCTACACTATCGTCCTTTCTTTCATCTCCGGGA-CTATGACT-GCTGA-TAT 629
| | || |||||||| | || | | |||||||| || | |||||| | | | | | |
Sbjct 579 CGTGGTTCTCTACACTGTAATCATCGCGTTCATCTCTGG-ATCTATGA-TAGGT-ACTCT 635
Query 630 TTTTATCTACTCATTT-GCCACAGGAGTTA-TAATCTTGA-CTAATAGATTCTTAGCTTC 686
|| ||| || ||| || || ||| | ||||||||| | || || ||||||||| |
Sbjct 636 CTTCCTCTT-TCTTTTCGCAACCGGA-TCCCTAATCTTGATC-AACAGTTTCTTAGCTCC 692
Query 687 ATGGCTCCCAAAAAGAAACCCTAAAGAGAAATATCTCTCCAAAG-CTGAAACGCTTGCTT 745
|||||| ||||| || |||||||||||||| || ||||| |||| ||||||| || | ||
Sbjct 693 ATGGCTTCCAAAGAGGAACCCTAAAGAGAAGTACCTCTC-AAAGGCTGAAACTCTAGTTT 751
Query 746 TCATCATCCTTA-TTCTAATCATCGCGT-TAACCATCGAATCC-AGCAACT-TAAACTCA 801
|| ||||| || |||| ||||||| || |||| ||||||||| | | | | | || ||
Sbjct 752 TCTTCATC-TTCCTTCTCATCATCG-GTATAACTATCGAATCCTA-CGA-TGTCAATTCC 807
Query 802 ACGCTTTTTGTGTTT-ATCATCGGATTAATGTTTCCAAGAGAAGGAAAAACTTACAGAAC 860
|| ||| || ||| | ||| ||| ||||||||||| || ||||||| ||| |||||||
Sbjct 808 TCGGTTTCGGT-TTTCACCATTGGAATAATGTTTCCACGACAAGGAAAGACTCACAGAAC 866
Query 861 GTTGATCCAACGG-TTGAGTTACCCGATTCACGAGTTTGTCCTTCCGGTTTACTTTGGTT 919
|||||| |||||| || ||||| ||||| ||||||||||| ||||| |||||||||||||
Sbjct 867 GTTGATTCAACGGCTT-AGTTATCCGATCCACGAGTTTGTTCTTCCCGTTTACTTTGGTT 925
Query 920 ACATCGGATTTAGATTCAGCGTCAATT-CGTTAACCAAACGCCACTACCTCG-TCCTTGG 977
|||| ||||| ||||||||| ||| | ||||||||||||| ||||||| || | |
Sbjct 926 ACATTGGATTCAGATTCAGCATCA-TCGCGTTAACCAAACGATTTTACCTCGGTC-TAGT 983
Query 978 TATGACT-GTGGCTT-TAAGCC-TACTGGGGAAGCTTCTAGGAGTTTTATTCGCTTGTTC 1034
||| | | || || ||| || || | ||||| || | || || || |||||||
Sbjct 984 TATTA-TAGTAA-TTGTAA-CCATAGTTGGGAAATTTATTGGTGTAATAAGCGCTTGT-- 1038
Query 1035 AT-T-CTTGAAGATCCCAAAGCAGTATTGGCTTTTCTTGTCAACCATGCTTTCCGTCAAA 1092
|| | | |||||||||| ||| |||||||||||||||| | ||||| || || || |||
Sbjct 1039 ATGTACCTGAAGATCCCTAAGAAGTATTGGCTTTTCTTACCCACCATTCTCTCTGTTAAA 1098
Query 1093 GGTCATATAGGTCTTGTTCTTCTCGACTCTAACT--TGATGTACAAGAAATGGTTTACTC 1150
|| ||| | |||||| ||||||| ||||| |||| | | | |||||||||| || |
Sbjct 1099 GGCCATGTGGGTCTTCTTCTTCTAGACTCAAACTACTCC-GAA-AAGAAATGGTGGAC-C 1155
Query 1151 -CGG-TAGTTCATGATATGTTCGTTGCGGCTCTAGTGATCATGACTTT-GTTAAGCGGAG 1207
| || ||||||||||| | || || ||| | ||||||| ||| | || |||||| |
Sbjct 1156 ACAACTA-TTCATGATATGATGGTGGCTGCTTTGGTGATCACGACGCTAGT-AAGCGGTG 1213
Query 1208 TTATAACATCTTTGTTGCTTAGAAGTCAAGA-A-AAG-AGTTTCGC--ACATATAAAAAC 1262
|| | | || || ||||||| ||| ||||| | ||| | ||| || || | || | |
Sbjct 1214 TTCTGGCGTCGTTCTTGCTTA-AAG-CAAGAGAGAAGGACTTT-GCTTACG-AGAAGA-C 1268
Query 1263 ATCACTTGAGTTATTTGA-CACTACCGAGGAGCTACGAGTGTTGA-CGTGCGTCTATGGC 1320
|| ||||| | | | ||| | |||||| |||| || || | | |||| ||||||
Sbjct 1269 TTCGCTTGAATC-TCACAACACGAACGAGGAATTACGCGTTTT-ATCATGCGCCTATGGA 1326
Query 1321 GTTCGTCATGCTCGTGGAT-CGATCTCT-TTAGTCTCTGCTCTA-AGTGGCTTTTCTCCT 1377
|| ||||||||||| || | |||||||| || ||||| || || || || || ||| |
Sbjct 1327 GTCCGTCATGCTCGCGG-TGCGATCTCTCTT-GTCTCGGC-CTTGAGCGG-TT--CTCGT 1380
Query 1378 GGAACTTCTTCTTCGCCGTTCACGCCT-TACCTTATGCACCTCATACCGCTCCCGAAGAA 1436
||| | ||| | | | |||||| ||| | | |||||||||| |||| ||||| |||||
Sbjct 1381 GGAGCCTCTGAT-C-C-GTTCACACCTCTGC-TTATGCACCTTGTACCCCTCCCCAAGAA 1436
Query 1437 GCGGAAAA-CTGAATTGTTGTACCACGAATTA-GACGAAGATGCAGGAAATTCCAACGGC 1494
|| |||| | |||||| |||| || ||| | |||||||||| ||| ||| | || ||
Sbjct 1437 ACG-AAAATCGGAATTGATGTATCATGAAC-ACGACGAAGATGGAGGCAATGCGAATGGA 1494
Query 1495 GGA-GACGATGAGTTCGGGACTAATGAAGGACTAGAGATCAATGACTCGATCGATTCGTT 1553
| | ||||| | || ||||| || ||||| |||||||||| || ||||| ||||||||
Sbjct 1495 G-ATGACGA--ATTT-GGGACCAACGAAGGTTTAGAGATCAACGATTCGATTGATTCGTT 1550
Query 1554 TACTAGAGACAGAAAAATAATGGTCCGGCAGGTGAAACTTGTGGCGCCGATGGAGAATAT 1613
| | | |||||| ||||| || ||| || |||||||| ||| ||| |||| |||||
Sbjct 1551 TGCCAAAGACAGCAAAATCTTGATCCAACAAGTGAAACTCGTGACGCAGATGCTTAATAT 1610
Query 1614 GCACGAAGAGATCTGTAACGCCACTGAAGATCTTCGTGTATCGATCGTGTTTCTACC-TT 1672
|||||||||||| |||||||| || || |||||||| || ||||| |||||||| || ||
Sbjct 1611 GCACGAAGAGATATGTAACGCAACAGAGGATCTTCGAGTTTCGATTGTGTTTCTTCCGTT 1670
Query 1673 TCCATAAACACCAGAGGATCGACGGGAAAACCACGAATGACGGGGAAGTTTTTC-GACAT 1731
|| ||||||||||||| ||||| ||||| || || || || |||||| |||| | ||||
Sbjct 1671 TC-ATAAACACCAGAGAATCGATGGGAAGACTACAAACGATGGGGAACTTTT-CAGACAG 1728
Query 1732 ATGAACCGGAAGGTTCTAAAGCAAGCTCAATGTTCGATTGGTATCTTTGTGGATAGAAAC 1791
|||||||| || ||||||| ||| |||| |||||||||||||| |||||||| |||||
Sbjct 1729 ATGAACCGTAATGTTCTAAGGCACGCTCCGTGTTCGATTGGTATTTTTGTGGACCGAAAC 1788
Query 1792 ATAACAGGGTTTCACCAGCTTCACGGGTCTGATTCGGTACAACACGTTGCTGCATTGTTC 1851
||||| || ||||| |||| ||||||| |||||| ||||||||||| || |||||||||
Sbjct 1789 ATAACCGGATTTCAGCAGCCGCACGGGTTTGATTCTGTACAACACGTCGCAGCATTGTTC 1848
Query 1852 TTCGGTGGTCCTGATGATCGTGAGGCTCTGTCCT-TGTGCAAGTGGCTTACCAATAACTC 1910
|| |||||||| ||||||||||||||||| | || ||||||||||||| | || ||| |
Sbjct 1849 TTTGGTGGTCCGGATGATCGTGAGGCTCT-TGCTCTGTGCAAGTGGCTCGCGAACAACAC 1907
Query 1911 TCAGATTCACCTCACTGTCATACAGTTTGTGGCGGATGACTCAAAGACAGAGAAAATTGT 1970
|| |||||| ||||| || |||||||| || | || || |||||| |||||| |||
Sbjct 1908 TCTGATTCATCTCACAGTTATACAGTTCGTATCCGAGGAATCAAAGGCAGAGACTCCTGT 1967
Query 1971 CGGAGACGCGGTGAC-CAAGGAAAACAACGAAGTATTCTTGGA-GATTGTTAGTGAAG-A 2027
||| | ||| |||| | || | || || || || ||| |||| | || | | |||| |
Sbjct 1968 TGGAAATGCGATGACACGAG-ATAATAAAGAGGTTTTCATGGAAG-TTCTG-G-GAAGGA 2023
Query 2028 -TCAAACCGAA-AACGAAACAGATCGAATCTTCTTAGAAGAATTCTATCACAGATTTGTG 2085
|||||| ||| || ||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 2024 ATCAAACTGAACAA-GAAACAGATCGGAGCTTCTTAGAAGAATTCTATAACAGATTTGTA 2082
Query 2086 ACGACGGGGCAAGTTGGATTCATAGAGAAGCGAGTGAGCAACGGAATGCAGACGCTGACA 2145
|||||||| ||||| || ||||||||||||| |||||||| ||| ||| ||||||||
Sbjct 2083 ACGACGGGACAAGTGGGGTTCATAGAGAAGCTTGTGAGCAATGGACCGCACACGCTGACG 2142
Query 2146 ATTCTAAGAGAGATCGGGGAGATGTATTCACTGTTTGTGGTAGGAAAAAACAGAGGAGAT 2205
|||||||||||||| || ||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 2143 ATTCTAAGAGAGATTGGAGAGATGTATTCACTGTTTGTGGTCGGAAAGAGCAGAGGAGAT 2202
Query 2206 TGTCCAATGACT-TCAGGAATGAATGATTGGGAAGAGTGTCCGGAATTAGGAACGGTCGG 2264
|| || ||||| | || |||||| |||||||||||||||||||| | ||||| |||||
Sbjct 2203 TGCCCTATGACGGTGAG-AATGAAAGATTGGGAAGAGTGTCCGGAGCTCGGAACTGTCGG 2261
Query 2265 AGATTTCTTGGCTTCATCAAATATGGATGTAAATGCTTCTGTATTAGTAGTTCAAAGACA 2324
|||||||||||||| || || | |||||||||| || ||||||||||||||||||||
Sbjct 2262 TGATTTCTTGGCTTCGTCTT-TA-G-ATGTAAATGCGTCAGTATTAGTAGTTCAAAGACA 2318
Query 2325 TAGAAACTCATTTGATAGCTTTGTAGATGAATAG 2358
||| | ||| |||||||||| ||||||| |||
Sbjct 2319 AAGACATTCACATGATAGCTTTATAGATGATTAG 2352
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88826451340
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5