BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16390.1
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471835 jgi|Araly1|471835|fgenesh2_kg.1__1789__AT1G16390.1 2527 0.0
> Ahg471835 jgi|Araly1|471835|fgenesh2_kg.1__1789__AT1G16390.1
Length=1773
Score = 2527 bits (1368), Expect = 0.0
Identities = 1667/1803 (92%), Gaps = 54/1803 (3%)
Strand=Plus/Plus
Query 1 AAATCAAGTCAAACAT--AA--AAGT---AAACAAAACCCTATCTCTTCCTATATATGGC 53
||||||| |||||||| || |||| ||| |||||||||||||||||||||||||||
Sbjct 1 AAATCAATTCAAACATAAAATTAAGTACAAAAGAAAACCCTATCTCTTCCTATATATGGC 60
Query 54 CGACTCGACTCGGCCGCTTCTCTCAGATTTCAACTCGTCCGAGTCAAATCTTCCGCCACC 113
||||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||
Sbjct 61 CGACTCGACACGGCCGCTTCTCTCCGATTCCAACTCGTCCGAGTCAAATCTTCCACCACC 120
Query 114 AAGATCCCTTGAGGAGACGATAGAGCGATGCATTGGAGACTTCGGGTGGGCACAGTTTCT 173
|| ||||||||| ||||||||||||| |||||| ||| |||||||||||||||| || ||
Sbjct 121 AAAATCCCTTGACGAGACGATAGAGCAATGCATCGGAAACTTCGGGTGGGCACAATTCCT 180
Query 174 CCAAGCCGCTTTAGTCTCATTCGCTTGGTTCTTCGACGCTCAACAAACATTCATCACCGT 233
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 181 CCAAGCCGCTTTAGTCTCATTCGCTTGGGTCTTCGACGCTCAACAAACATTCATCACTGT 240
Query 234 CTTCACCGACTCACAACCCATGTGGCACTGTGA-C-AACTCGGACCGAGTCGACTCAGTA 291
|||||||||||||||||||| ||||||||| | | || ||||| |||||||||||||||
Sbjct 241 CTTCACCGACTCACAACCCACATGGCACTGT-ACCGAA-TCGGAACGAGTCGACTCAGTA 298
Query 292 TGCAACACATCCTCCTCCAACCTCTGCACCTTACCCAACCAAACCTGGTCTTGGGACTTG 351
|||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 299 TGCAACACGTCATCCTCCAACCTCTGCACCTTACCCAACAAAACCTGGTCTTGGGACTTC 358
Query 352 AACCCACACGTTTCAATCATTTCCGAGTGGGGGCTACAATGCGCCGGCTCGTTCCTCAAG 411
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 AACCCTCACGTGTCAATCATTTCCGAGTGGGGGCTACAATGCGCCGGCTCGTTCCTCAAG 418
Query 412 GGATTTCCTGCAAGCTCATTCTTCCTCGGCTGTCTAATCGGCGGCTTAGCTCTCTCTACA 471
|| || ||||||||||| || ||||| |||||||||||||||||||||| ||| ||||||
Sbjct 419 GGGTTGCCTGCAAGCTCCTTTTTCCTTGGCTGTCTAATCGGCGGCTTAGTTCTTTCTACA 478
Query 472 CTCGCCGACTCATCGCTCGGTCGTAAGAACATGCTCTTGTTGTCGTGTCTCATAATGTCT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 CTCGCCGACTCATCGCTCGGTCGTAAGAACATGCTCTTGTTGTCGTGTCTCATAATGTCT 538
Query 532 CTCTCTTCCATGTTAACAGCTTTCTCAACGAGCATTTGGGTTTATGCGTTTTTGAGATTC 591
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTTTCTTCGATGTTAACAGCTTTCTCAACGAGCATTTGGGTTTATGCGTTTTTGAGATTC 598
Query 592 TTGAACGGGTGTGGCCGAGCCACGATCGGGACTTGCGCGCTTGTTCTATCAACGGAGTTA 651
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 599 TTGAACGGGTGTGGCCGAGCCACGATCGGGACTTGCGCGCTCGTTTTATCAACGGAGTTA 658
Query 652 GTCGGTAAAAAATGGCGAGGACAAGTTGGAGCGATGGGTTTCTTTTGCTTCACGCTAGGG 711
||||||||||||||||||||| |||| || || ||||||||||||||||||||| |||||
Sbjct 659 GTCGGTAAAAAATGGCGAGGAAAAGTCGGTGCTATGGGTTTCTTTTGCTTCACGTTAGGG 718
Query 712 TTTTTATCGCTTCCGATGTTAGGTTACATTAATGAA-GGGAATTCTTGGAGGAATCTGTA 770
||||||||||| ||||||||||||||||||||| || |||||||| |||||| |||| ||
Sbjct 719 TTTTTATCGCTGCCGATGTTAGGTTACATTAAT-AACGGGAATTCGTGGAGGTATCTTTA 777
Query 771 TGTTTGGACATCGATACCGACTTTAATCTATTGCTGTTTAGTTCGGAGTTTCGTCCGGGA 830
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||| ||||
Sbjct 778 TGTTTGGACATCGATACCGACTTTAATCTATTGCTGTTTAATTCGGATTTTCGTCAGGGA 837
Query 831 ATCTCCTAGATGGCTTATCGTAAAGGGTCGTAAAGAAGAAGCCGTCTCAATTCTCCAAAG 890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 ATCTCCTAGATGGCTTATCGTAAAGGGTCGTAAAGAAGAAGCCGTCTCAATTCTCCAAAG 897
Query 891 CATTGCTTCTAATGCAATCACTATGAGCTTCACAAACTTATGTTTTGA-AGTAGAAAATG 949
||||||||||||||||||||||||||||||||| |||||||||||||| | ||||| | |
Sbjct 898 CATTGCTTCTAATGCAATCACTATGAGCTTCACGAACTTATGTTTTGATA-TAGAAGAGG 956
Query 950 ATCAATCCAAGTCAAATCCTGATGTTTATGATGCGTTAAAGATCTTGGTGAGGAAAAGTT 1009
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 957 ATCAATCCAAGTCAAATCCTGATGTTTACGACGCGTTAAAGATCTTGGTGAGGAAAAGTT 1016
Query 1010 GGTCGTTTAGAAGATTATTAGCGGCAATGGTGGTTGGATTCGGTATCGGTATGGTTTATT 1069
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1017 GGTCGTTTAGGAGATTATTAGCGGCAATGGTGGTTGGATTTGGTATCGGTATGGTTTATT 1076
Query 1070 ATGGAATGCCATTAGCTTTAACGAATCTAAACTTCAATCTTTACTTAGGGGTTGTGTTCA 1129
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1077 ACGGAATGCCATTAGCTTTAACGAATCTAAACTTCAATCTTTACTTAGGTGTTGTATTCA 1136
Query 1130 ACGCCTTGTCTGAGTTCCCAGCTTTTCTGATAACGTTTTTCTTCATTGATAAAATCAATA 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ACGCCTTGTCTGAGTTCCCAGCTTTTCTGATAACGTTTTTCTTCATTGATAAAATCAATA 1196
Query 1190 GGAGAGATGCGTTGATCGGATTTACAGCTCTAAGTGGAATCTCTAGCGCTCTAATCGCGG 1249
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1197 GAAGAGATGCGTTGATCGGATTTACAGCTCTAAGTGGAATCTCTAGCGCTCTGATCGCGG 1256
Query 1250 TGTTAGGACAACAACTAGGGTCATTACAGATTGTGTTAGAGCTCGTTTCGTTTTTCAGCG 1309
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 1257 TGTTAGGACAACAACTAGGGGCATTACAGATTGTGTTAGAGCTCGTTTCGTTTTTCAGTG 1316
Query 1310 CATGCACCGCATTTAACATGACGCTTATTTACACAATTGAAATGTTTCCGACATGTGTGA 1369
| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1317 CGTGCACCGCATTTAACATGACGCTTATATACACAATTGAGATGTTTCCGACATGTGTGA 1376
Query 1370 GGAACTCGGCGATTTCGATGGTGAGGCAAGCATTGGTGTTTGGCGGCGTGTTTAGTCCAG 1429
|||||||||||||| ||||||||||||| || |||||||||||||||| ||||||||||
Sbjct 1377 GGAACTCGGCGATTGCGATGGTGAGGCAGGCGCTGGTGTTTGGCGGCGTTTTTAGTCCAG 1436
Query 1430 TGATGGTTGCTGCTGGTCGGGAAAATCAGTTTTGGTCGTATGGGTTGTTTGGTTTGATCA 1489
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1437 TGATGGTTGCTGCTGGTCGCGAAAATCAGTTTTGGTCGTATGGGTTGTTTGGTTTGGTCA 1496
Query 1490 TAGGATTGTGTGGATTGTTTGTGTTTGGATTGCCGGAGACTAGAGGAAGTGTTTTATGCG 1549
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1497 TAGCATTGTGTGGATTGTTTGTGTTTGGATTGCCGGAGACTAGAGGAAGTGTTCTATGCG 1556
Query 1550 ACACTATGGACGAGGAGGAGTATAAGACTTTGGCAAAAAGACAATTTATTGGTTGATACT 1609
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1557 ACACTATGGACGAGGAGGAGTATAAGACTTTGGCAAAGAGACAATTTATTGGTTGATA-- 1614
Query 1610 TGATACTGTTGTCTTTTGTTGTAATGG-TTAAAAAGTTTGCAGGCTTAAACCAGTTCGGT 1668
| | ||||||||||| | || ||||| | | || | ||||
Sbjct 1615 -G-T---GTTGTCTTTTGC---A--GGCTTAAAC------C-G--TT-------T-CGGT 1647
Query 1669 ATTGATTCAAAT-CAATTCTGATTTTAATACTTAT-AAACCACG---GG-TTAACTCCTT 1722
|||||||||||| | |||||| ||||||||||||| |||||||| || ||||||||||
Sbjct 1648 ATTGATTCAAATGCCATTCTGGTTTTAATACTTATGAAACCACGTACGGGTTAACTCCTT 1707
Query 1723 ACATTATAAGTGACTGTCTCATCT--G-TACCGGACCATAAACCAAATTCAACCAACCAT 1779
||||| ||||||||||||| ||| | ||||||||||||||||||||||| ||||||||
Sbjct 1708 GCATTACAAGTGACTGTCTCCTCTATGATACCGGACCATAAACCAAATTCATCCAACCAT 1767
Query 1780 AAT 1782
|||
Sbjct 1768 AAT 1770
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67229282425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5