BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16400.1
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312617 jgi|Araly1|312617|fgenesh1_pm.C_scaffold_1001397 2444 0.0
Ahg920545 jgi|Araly1|920545|scaffold_101826.1 2281 0.0
> Ahg312617 jgi|Araly1|312617|fgenesh1_pm.C_scaffold_1001397
Length=1614
Score = 2444 bits (1323), Expect = 0.0
Identities = 1524/1621 (94%), Gaps = 14/1621 (1%)
Strand=Plus/Plus
Query 73 ATGATGATGAAGATTAGCTTTAACACATGC-TTTCAAATCTTACTAGGATTTATCGTCTT 131
|||||||||| ||| ||||||||||||| | ||||||||| |||||| |||||| ||||
Sbjct 1 ATGATGATGATGATGAGCTTTAACACAT-CATTTCAAATCATACTAGTCTTTATCCTCTT 59
Query 132 CATCGCATCAATCACTTTACTAGGTCGAATATTCTCAAGGCCTTCCAAAACCAA-AGACC 190
||||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||
Sbjct 60 CATCGCATCAATCACTTTACTAGGTCGAATACTCTCAAGGCCCTCCAAAA-CAAGAGACC 118
Query 191 GGTGTCGCCAGCTTCCTCCT-GGCCGACCAGGATGGCCCATCCTCGGCAATCTACCCGAA 249
| | |||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||
Sbjct 119 GATCTCGCCAGCTTCCTCCTGGGCC-ACCAGGATGGCTCATCCTCGGCAATCTACCCGAA 177
Query 250 CTAATCATGACTCGTCCTAGGTCCAAATATTTCCACCTTGCCATGAAAGAGCTAAAAACG 309
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 178 CTAATCATGACTCGTCCTAGGTCGAAATATTTCCACCTTGCCATGAAAGAGCTAAAAACA 237
Query 310 GATATCGCATGTTTCAACTTTGCCGGAACCCACACCATCACCATAAACTCCGACGAGATC 369
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 238 GATATTGCATGTTTCAATTTTGCCGGAACCCACACCATCACCATAACCTCCGACGAGATC 297
Query 370 GCTAGAGAAGCTTTTAGAGAGCGAGACGCAGATTTGGCAGACCGGCCTCAACTTTCCATC 429
||| |||||| ||||||||| ||||||| |||||||||||||||||||||||||||| |
Sbjct 298 ACTAAAGAAGCGTTTAGAGAGAGAGACGCCGATTTGGCAGACCGGCCTCAACTTTCCAGC 357
Query 430 GTAGAGTCCATTGGAGACAATTACAAAACAATGGGAACCTCATCGTACGGTGAACATTTC 489
|||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||
Sbjct 358 ATAGAGTCCATTGGAGACAATTACAAATCAATGGGAACCTCCCCGTACGGTGAACAATTC 417
Query 490 ATGAAGATGAAAAAAGTGATCACAACGGAAATTATGTCCGTTAAAACGTTGAATATGTTG 549
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 418 ATGAAGATGAAAAAAGTGATTACAACGGAAATTATGTCCGTTAAAACGTTGAACATGTTG 477
Query 550 GAAGCTGCGAGAACCATCGAAGCGGATAATCTCATTGCTTACATTCACTCGATGTATCAA 609
|||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 478 GAAGCTGCAAGAACCATCGAAGCTGATAATTTCATTGCTTACATTCACTCGATGTATCAA 537
Query 610 CGGTCGGAGACGGTCGACGTTAGAGAACTTTCGAGAGTTTATGGTTACGCAGTGACCATG 669
|||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 538 CGGTCGGAGACGGTCGACGTTAGAGAGCTCTCGAGGGTTTATGGTTACGCAGTGACCATG 597
Query 670 AGAATGTTGTTTGGAAGGAGACATGTCACGAAAGAAAACATGTTTTCGGATGATGGGAGA 729
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 598 AGGATGTTGTTTGGAAGGAGACATGTCACGAAAGAAAACGTGTTTTCGGATGATGGGAGA 657
Query 730 CTAGGAAAAGCCGAAAAACATCATCTTGAGGTGATTTTCAACACTCTAAACTGTTTGCCA 789
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTAGGAAAAGCAGAAAAACATCATCTTGAGGTGATTTTCAACACTCTAAACTGTTTGCCA 717
Query 790 GGTTTTAGTCCCGTGGATTACGTGGACCGATGGTTAG-GTGGTTGGAATATTGATGGTGA 848
||||||||||||||||||||||||| ||||||| | | |||||||||||||||||| |
Sbjct 718 AGTTTTAGTCCCGTGGATTACGTGGAAAGATGGTT-GAGAGGTTGGAATATTGATGGTCA 776
Query 849 AGAGGAGA-GAGCGAAAGTGAATGTTAATCTTGTTCGTAGTTACAACAATCCCATAATAG 907
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 777 AGAGGAGATG-GCGAAAGTGAATGTTAATCTTGTTCGTAGTTACAACAATCCCATAATCG 835
Query 908 ACGAGAGGGTCGAAATT-TGGAGGGAAAAAGGTGGTAAGGCTGCTGTGGAAGATTGGCTT 966
|||||||| | | |||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 ACGAGAGGATTG-AATTATGGAGGGAAAAAGGTGGTAAGGCTGCTGTTGAAGATTGGCTT 894
Query 967 GATACGTTCATTACGCTAAAAGATCAAAACGGAAACTACTTGGTTACGCCAGACGAAATC 1026
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 895 GATACGTTCATTACGTTAAAAGATCAAAACGGAAACTACTTGGTCACGCCAGACGAAATC 954
Query 1027 AAAGCTCAATGCGTCGAATTTTGTATAGCAGCGATCGATAATCCGGCAAATAACATGGAG 1086
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 955 AAAGCTCAATGCGTTGAATTTTGTATAGCAACGATCGATAATCCGGCAAATAACATGGAG 1014
Query 1087 TGGACACTTGGGGAAATGTTAAAGAACCCGGAGATTCTTAGAAAAGCTCTGAAGGAGTTG 1146
|||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1015 TGGACACTTGCGGAAATGTTAAAGAACCCGGAGATTCTCAGAAAAGCTCTGAAAGAGTTA 1074
Query 1147 GATGAAGTAGTTGGAAAAGACAGGCTTGTGCAAGAATCAGACATACGAAATCTAAACTAC 1206
|| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 1075 GAGGAAGTAGTTGGAAAAGACAGGCTTGTGCAAGAATCTGACATACCAAATCTAAACTAC 1134
Query 1207 TTAAAAGCTTGTTGCAGAGAAACATTCAGGATTCACCCAAGCGCTCATTATGTCCCACCT 1266
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1135 TTAAAAGCTTGTTGCAGAGAAACATTCAGGATTCACCCAAGCGCTCATTATGTCCCTCCT 1194
Query 1267 CATGTTGCCCGTCAAGATACCACCCTTGGGGGTTATTTTATTCCCAAAGGTAGCCACATT 1326
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1195 CATGTGGCCCGTCAAGATACCACCCTCGGGGGTTATTTTATTCCCAAAGGTAGCCACATT 1254
Query 1327 CATGTATGCCGCCCTGGGCTAGGCCGGAACCCTAAAATATGGAAAGATCCATTAGCATAC 1386
||||||| ||||||||| |||||||||||||||||||||||||||||||||| | |||
Sbjct 1255 CATGTATCCCGCCCTGGATTAGGCCGGAACCCTAAAATATGGAAAGATCCATTGGTATAT 1314
Query 1387 GAACCGGAGCGTCACCTCCAAGGAGACGGAATCACAAAAGAGGTTACTCTGGTCGAAACA 1446
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1315 GAACCGGAGCGTCACCTCCAAGGAGAGGGAATCACAAAAGAGGTTACTCTGGTGGAAACA 1374
Query 1447 GAGATGCGTTTTGTCTCATTTAGCACTGGTAGACGTGGCTGCGTCGGTGTCAAAGTCGGG 1506
||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 1375 GAGATGCGTTTTGTCTCGTTTAGCACTGGTCGTCGTGGCTGCGTCGGTGTCAAAGTCGGG 1434
Query 1507 ACAATTATGATGGCTATGATGTTGGCTAGGTTTCTTCAAGGTTTTAACTGGAAACTCCAT 1566
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1435 ACAATTATGATGGTTATGATGTTGGCTAGGTTTCTTCAAGGGTTTAACTGGAAACTCTAC 1494
Query 1567 CGAGATT-TCGGACCGTTAAGCCTCGAGGAAGATGATGCATCATTGCTTATGGCTAAGCC 1625
| || || | |||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1495 CAAGGTTGT-GGACCGCTAAGCCTCGAGGAAGATGATGCATCATTGCTGATGGCTAAGCC 1553
Query 1626 TCTTCTTTTGTCTGTTGAGCCACGCTTGGCATCAAACCTTTATCCAAAATTCCGTCCTTA 1685
|||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1554 TCTTCTTTTGTCCGTTGAGCCACGCTTGGCACCAAACCTTTATCCAAAATTCCGCCCTTA 1613
Query 1686 A 1686
|
Sbjct 1614 A 1614
> Ahg920545 jgi|Araly1|920545|scaffold_101826.1
Length=1660
Score = 2281 bits (1235), Expect = 0.0
Identities = 1478/1597 (93%), Gaps = 10/1597 (1%)
Strand=Plus/Plus
Query 103 TTTCAAATCTTACTAGGATTTATCGTCTTCATCGCATCAATCACTTTACTAGGTCGAATA 162
||||||||| |||||| |||||| ||| ||| ||||||||||||||||| |||||||||
Sbjct 54 TTTCAAATCCTACTAGTCTTTATCCTCTCCATGGCATCAATCACTTTACTGGGTCGAATA 113
Query 163 TTCTCAAGGCCTTCCAAAACCAAAGACCGGTGTCGCCAGCTTCCTCCTGGCCGACCAGGA 222
||||||| || ||||||||||||||| | |||||||||||| ||||||| |||||||
Sbjct 114 CTCTCAAGACCCACCAAAACCAAAGACCAATCTCGCCAGCTTCCGCCTGGCCCACCAGGA 173
Query 223 TGGCCCATCCTCGGCAATCTACCCGAACTAATCATGACTCGTCCTAGGTCCAAATATTTC 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 TGGCCCATCCTCGGCAATCTACCCGAACTAATCATGACTCGTCCTAGGTCCAAATATTTC 233
Query 283 CACCTTGCCATGAAAGAGCTAAAAACGGATATCGCATGTTTCAACTTTGCCGGAACCCAC 342
| |||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 234 CGCCTTGCCATGAAAGAGCTAAAAACAGATATTGCATGTTTCAATTTTGCCGGAACCCAC 293
Query 343 ACCATCACCATAAACTCCGACGAGATCGCTAGAGAAGCTTTTAGAGAGCGAGACGCAGAT 402
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |||
Sbjct 294 ACCATCACCATAAACTCCGACGAGATCGCTAGAGAAGCGTTTAGAGAGAGAGACGCCGAT 353
Query 403 TTGGCAGACCGGCCTCAACTTTCCATCGTAGAGTCCATTGGAGACAATTACAAAACAATG 462
|||||||||||||||||||||| |||| | ||| | || ||||||||||||||| |||||
Sbjct 354 TTGGCAGACCGGCCTCAACTTTTCATCATGGAGACAATCGGAGACAATTACAAATCAATG 413
Query 463 GGAACCTCATCGTACGGTGAACATTTCATGAAGATGAAAAAAGTGATCACAACGGAAATT 522
|||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct 414 GGAATCTCGCCGTACGGTGAACAATTCATGAAGATGAAAAGAGTGATCACAACGGAAATT 473
Query 523 ATGTCCGTTAAAACGTTGAATATGTTGGAAGCTGCGAGAACCATCGAAGCGGATAATCTC 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 474 ATGTCCGTTAAAACGTTGAATATGTTGGAAGCTGCGAGAACCATCGAAGCGGATAATCTC 533
Query 583 ATTGCTTACATTCACTCGATGTATCAACGGTCGGAGACGGTCGACGTTAGAGAACTTTCG 642
||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 534 ATTGCTTACGTTCACTCCATGTATCAACGGTCCGAGACGGTCGATGTTAGAGAACTCTCG 593
Query 643 AGAGTTTATGGTTACGCAGTGACCATGAGAATGTTGTTTGGAAGGAGACATGTCACGAAA 702
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 594 AGGGTTTATGGTTACGCAGTGACCATGAGAATGTTGTTTGGAAGGAGACATGTCACGAAA 653
Query 703 GAAAACATGTTTTCGGATGATGGGAGACTAGGAAAAGCCGAAAAACATCATCTTGAGGTG 762
|||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 654 GAAAACGTGTTTTCCGATGATGGGAGACTAGGAAAAGCGGAAAAACATCATCTTGAGGTG 713
Query 763 ATTTTCAACACTCTAAACTGTTTGCCAGGTTTTAGTCCCGTGGATTACGTGGACCGATGG 822
|||||||||||||| |||||||| ||| ||||||||| | |||||||||||| ||||||
Sbjct 714 ATTTTCAACACTCTTAACTGTTTACCATCTTTTAGTCCAGCGGATTACGTGGAACGATGG 773
Query 823 TT-AGGTGGTTGGAATATTGATGGTGAAGAGGAGAGAGCGAAAGTGAAT-GTTAATC-TT 879
|| || ||||||||| |||||||| ||||| |||| | | ||||||| || || | ||
Sbjct 774 TTGAGA-GGTTGGAATGTTGATGGTCAAGAGAAGAGGGTTACAGTGAATTGT-AA-CATT 830
Query 880 GTTCGTAGTTACAACAATCCCATAATAGACGAGAGGGTCGAAATT-TGGAGGGAAAAAGG 938
|||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||
Sbjct 831 GTTCGTAGTTACAACAATCCCATAATTGACGAGAGGGTCGAG-TTATGGAGGGAAAAAGG 889
Query 939 TGGTAAGGCTGCTGTGGAAGATTGGCTTGATACGTTCATTACGCTAAAAGATCAAAACGG 998
||||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 890 TGGTAAGGCTGCTGTTGAAGATTGGCTTGATACGTTCATTACGTTAAAAGATCGAAACGG 949
Query 999 AAACTACTTGGTTACGCCAGACGAAATCAAAGCTCAATGCGTCGAATTTTGTATAGCAGC 1058
||| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 950 AAAGTACTTGGTCACGCCAGACGAAATCAAAGCTCAATGCGTTGAATTTTGTATAGCAGC 1009
Query 1059 GATCGATAATCCGGCAAATAACATGGAGTGGACACTTGGGGAAATGTTAAAGAACCCGGA 1118
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1010 GATCGATAATCCGGCAAATAACATGGAGTGGACACTTGCGGAAATGTTAAAGAACCCGGA 1069
Query 1119 GATTCTTAGAAAAGCTCTGAAGGAGTTGGATGAAGTAGTTGGAAAAGACAGGCTTGTGCA 1178
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1070 GATTCTTAGAAATGCTCTCAAGGAGTTAGATGAAGTAGTTGGAAAAGACAGGCTTGTGCG 1129
Query 1179 AGAATCAGACATACGAAATCTAAACTACTTAAAAGCTTGTTGCAGAGAAACATTCAGGAT 1238
|||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1130 AGAATCAGACATACCAAATCTAAACTACTTAAAAGCTTGTTGTAGAGAAACCTTCAGGAT 1189
Query 1239 TCACCCAAGCGCTCATTATGTCCCA-CCTCATGTTGCCCGTCAAGATACCACCCTTGGGG 1297
||||||||| |||||||||||||| || ||| |||||||||||||||||||||||||||
Sbjct 1190 TCACCCAAGTGCTCATTATGTCCCTTCC-CATCTTGCCCGTCAAGATACCACCCTTGGGG 1248
Query 1298 GTTATTTTATTCCCAAAGGTAGCCACATTCATGTATGCCGCCCTGGGCTAGGCCGGAACC 1357
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 1249 GTTATTTTATTCCCAAAGGTAGCCACATTCATGTATCCCGCCCTGGACTAGGCCGGAACC 1308
Query 1358 CTAAAATATGGAAAGATCCATTAGCATACGAACCGGAGCGTCACCTCCAAGGAGACGGAA 1417
|||||||||||||||||||||| | |||| |||| |||||||||||||||||||||||||
Sbjct 1309 CTAAAATATGGAAAGATCCATTGGTATACAAACCCGAGCGTCACCTCCAAGGAGACGGAA 1368
Query 1418 TCACAAAAGAGGTTACTCTGGTCGAAACAGAGATGCGTTTTGTCTCATTTAGCACTGGTA 1477
|||||||||||||||||||||| |||| |||||||||||||||||| |||||||| |||
Sbjct 1369 TCACAAAAGAGGTTACTCTGGTGGAAAAAGAGATGCGTTTTGTCTCGTTTAGCACCGGTC 1428
Query 1478 GACGTGGCTGCGTCGGTGTCAAAGTCGGGACAATTATGATGGCTATGATGTTGGCTAGGT 1537
||||||||||| ||||||| ||||||||||| || ||||||| |||||||||||||||||
Sbjct 1429 GACGTGGCTGCATCGGTGTTAAAGTCGGGACGATCATGATGGTTATGATGTTGGCTAGGT 1488
Query 1538 TTCTTCAAGGTTTTAACTGGAAACTCCATCGAGATTTCGGACCGTTAAGCCTCGAGGAAG 1597
|||||||||| ||||||||||| |||||| |||||| ||||| ||||||||||||||||
Sbjct 1489 TTCTTCAAGGGTTTAACTGGAATCTCCATAAAGATTTTGGACCATTAAGCCTCGAGGAAG 1548
Query 1598 ATGATGCATCATTGCTTATGGCTAAGCCTCTTCTTTTGTCTGTTGAGCCACGCTTGGCAT 1657
|| ||||||||||||| |||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1549 ATAATGCATCATTGCTGATGGCTAAACCTCTTCTCTTGTCCGTTGAGCCACGCTTGGCAC 1608
Query 1658 CAAACCTTTATCCAAAATTCCGTCCTTAAAAACAAGA 1694
|||||||||||||||||||||| |||||| || ||||
Sbjct 1609 CAAACCTTTATCCAAAATTCCGCCCTTAAGAAGAAGA 1645
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70543133740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5