BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16420.1
Length=1338
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471839 jgi|Araly1|471839|fgenesh2_kg.1__1793__AT1G16420.1 1718 0.0
> Ahg471839 jgi|Araly1|471839|fgenesh2_kg.1__1793__AT1G16420.1
Length=1302
Score = 1718 bits (930), Expect = 0.0
Identities = 1164/1275 (91%), Gaps = 24/1275 (2%)
Strand=Plus/Plus
Query 1 ATAAAGAAAAAACAAAGGTATAATTCATTCATTCGTCAATGGCGAAGAAAGCACTTTTGA 60
|||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 ATAAAGGGAAAACAAAGGTTTAATTCATTCATTCGTCAATGGCGAAGAAAGCAGTTTTGA 60
Query 61 TAGGAATCAACTACCCAGGAACCGCGGTGGAGTTACGTGGCTGTGTCAACGACGTCCACC 120
||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 61 TAGGAATCAACTACCCAGGGACCGCGGTGGAGTTACGCGGCTGTGTCAACGACGTCCGCC 120
Query 121 GGATGCAGAAATGCCTAATCGAGCTTTACGGGTTCGCCAACAAGGACATCGTCATAATGA 180
|||||||||||||||||||||| |||||||| ||||| |||||||||||| |||| |||
Sbjct 121 GGATGCAGAAATGCCTAATCGAACTTTACGGATTCGCTAACAAGGACATCACCATACTGA 180
Query 181 TAGACACAGACAAATCATGTATACAACCTACGGGCAAGAATATCTGCGACGAACTGGA-T 239
| |||||||| |||||||||||||||||||| |||||||| ||| ||||||| | || |
Sbjct 181 TCGACACAGATAAATCATGTATACAACCTACAGGCAAGAACATCCACGACGAA-TTGACT 239
Query 240 A-ATCTCATCGCATCAGGGCAATCTGGCGATTTTCTGGTCTTTCATTACAGTGGACATGG 298
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGA-CTCATCGCATCAGGGCAATCTGGCGATTTTCTGGTCTTTCATTACAGTGGACATGG 298
Query 299 CACGAGAATCCCTCCTGGGATAGAAGACTCAGAAGACCCTACAGGGTTTGACGAGTGTAT 358
|||||||||||| |||||||||| ||| | || ||| ||||||||||||||||||||||
Sbjct 299 CACGAGAATCCCGCCTGGGATAGGAGAATTAGGCGACTCTACAGGGTTTGACGAGTGTAT 358
Query 359 CACTCCGTGCGATATGAATCTAATAAAGGACCA-GCAATTTAGAGAAATGGTGTCACGTG 417
|||||| ||||||||||||||||| |||||||| | | ||||||||||||||||||| ||
Sbjct 359 CACTCCTTGCGATATGAATCTAATTAAGGACCATG-ATTTTAGAGAAATGGTGTCACATG 417
Query 418 TAAAAGAAGGTTGTCAGTTGACGATAATCTCGGACTCTTGTCATAGTGGTGGTCTCATCC 477
|||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 418 TAAAAGAAGGCTGTCAATTGACGATAATCTCGGACTCTTGTCACAGTGGTGGTCTCATCG 477
Query 478 AGGAAGTAAAGGAGCAGATCGGTGAAAGCCATATGAAGCCGGTCGATAAAGTTAAGGAGC 537
||||||||||||||||||| || ||||||||| |||||||| || || | || |||||||
Sbjct 478 AGGAAGTAAAGGAGCAGATTGGGGAAAGCCATGTGAAGCCGATCAATGAGGTAAAGGAGC 537
Query 538 AGATCGAGGAAAGCCATATGAAGCAGCCAAAACTCGGGATTGCTAGTTACTTCCTTAACA 597
||||||| ||||||||| |||||| ||||||||| ||||||||||||||||| |||| ||
Sbjct 538 AGATCGACGAAAGCCATGTGAAGCCGCCAAAACTTGGGATTGCTAGTTACTTGCTTAGCA 597
Query 598 TTGTGATGAATTTGTTAGCGACTTGTGGAGTCTCAAAATCTCAGAGAGACCGTGGAGGTG 657
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 598 TTGTGATGAATTTGTTAGCGACTTGTGGAATCTCAAAATCTCAGAGAGACCGTGGAGGTG 657
Query 658 GCGAAGAAAGCTTTAGAGGAGAGATAGAATTAGAGAAAGAC---GAAACGCTTGATATAA 714
|| ||||||||||||| |||||||||||||||| || || |||||| |||||||||
Sbjct 658 GCCAAGAAAGCTTTAGCGGAGAGATAGAATTAGCGAGCGATTATGAAACGTTTGATATAA 717
Query 715 AAACAAGATATCTACCTTTCGAAAGCTACTTAAGTCTTCTCAAGGAACAAACCGGGCAAA 774
|||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 718 AAACTAGATATCTACCTTTCGAAAGCTACGTAAGTCTTCTCAAGCAACAAACCGGGCAAA 777
Query 775 CCAATATCGAACCT-GTGAGAATTAGACAGACACTTCTCAAATTATTCGGTGAAGACCCA 833
||||||||||| || | |||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 778 CCAATATCGAATCTCG-GAGAATCAGACAGACACTTCTCAAATTATTCGGTGAAGACTCA 836
Query 834 AGCCCGAATCGTCAGAGAGGTTTAAGTGACCTAGGAAACTGCGAGGTTGATGCAGGTGAT 893
||||||| || ||||||||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 837 AGCCCGATTCATCAGAGAGGTTTAAGTGACCTAGGAAACTTCGATGTTAATGCAGGTGAT 896
Query 894 TCTGGAGCTTCAAGATTGAATGCCGTTACCGACAATGGGATTCTATTAAGTGGATGTCAA 953
|||||||| || ||| || ||||| || | | |||||||| |||||||||||||||
Sbjct 897 TCTGGAGCCCCAGGATCGATTGCCG--AC--A-AG-GGGATTCTGTTAAGTGGATGTCAA 950
Query 954 ACAGATCAGAGATCAGAGGATGTTTATGTGACAAGAACTGGAAAAGCTTATGGAGCATTC 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 951 ACAGATCAGAGATCAGAGGATGTTTATGTGACAAGAACTGGAAAAGCTTATGGGGCATTC 1010
Query 1014 AGTGATGCGATTCAGATGATATTGTCCG-CGCCGAGAAAGGATAAGAAGAAGATTACGAA 1072
|||||||||||||||| ||||||||| | ||||||| ||||| |||||||||||||||||
Sbjct 1011 AGTGATGCGATTCAGACGATATTGTC-GACGCCGAGGAAGGAGAAGAAGAAGATTACGAA 1069
Query 1073 CAAAGAATTGGTTTCCGAAGCTAGAGTGTTTCTCAAGAAACGGGGGTATAGTCAACGACC 1132
||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1070 CAAAGAAGTGGTTTCCGAAGCTAGAGTGCTTCTCAAGAAACGGGGGTTTAGTCAACGACC 1129
Query 1133 AGGCTTGTATTGTCATGACCGTTTTGTTGATAAACCATTTATATGCTACTAAAACACAAG 1192
||||||||||||||||||||||| |||| |||||||||| |||||||| ||| ||||||
Sbjct 1130 AGGCTTGTATTGTCATGACCGTTATGTTAATAAACCATTCATATGCTA--AAA-CACAAG 1186
Query 1193 AAGTTCATCTGGAA-AGTTTTGTTTGATGGTGCATTTGAAGTTATTTCTTTTTGTGATTT 1251
||||||||||| || | |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1187 AAGTTCATCTG-AAGACTTTTGTTTGATGGTGCATTTCAAGTTATTTCTTTTTGTGATTT 1245
Query 1252 AAGATTTTTATGTAG 1266
|||||||||||||||
Sbjct 1246 AAGATTTTTATGTAG 1260
Score = 69.4 bits (37), Expect = 6e-11
Identities = 41/43 (95%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 1296 GTCTCTCAGTGACTTGTGATTCAAGTAATATACAGTTTTATTT 1338
|||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1260 GTCTCTCAGTGACTTGTGATTCAAGTAATATACAATTTTTTTT 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50055390021
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5