BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16430.1
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
Ahg312620 jgi|Araly1|312620|fgenesh1_pm.C_scaffold_1001400 682 0.0
Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1 586 6e-167
> Ahg312620 jgi|Araly1|312620|fgenesh1_pm.C_scaffold_1001400
Length=453
Score = 682 bits (369), Expect = 0.0
Identities = 424/450 (94%), Gaps = 6/450 (1%)
Strand=Plus/Plus
Query 17 ATGAACAAAGGCGGTGGTTCCGGTGGAGGAAGCGGACCAACAGCTGCTGCGGCAGCCGCT 76
|||||||||||||||||||||||||||||||||||||| || | || ||||||||||||
Sbjct 1 ATGAACAAAGGCGGTGGTTCCGGTGGAGGAAGCGGACCGAC-G--GCCGCGGCAGCCGCT 57
Query 77 GC-G--TTACAGAAGCAAAAGGCGTTGTTGCAGAGAGTTGATACTGACATCACATCTGTC 133
|| | |||||||| |||||||| ||| ||||||| || || ||||||||||||||||||
Sbjct 58 GCTGCCTTACAGAAACAAAAGGCCTTGATGCAGAGGGTAGAGACTGACATCACATCTGTC 117
Query 134 GTCGATAACTTCAATCAAATCGTCAATGTCGCAAGGGTGAGTGATCCGCCAATGAAGAAC 193
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 GTCGATAACTTCACTCAAATCGTCAATGTCGCAAGGGTGAGTGATCCACCAATGAAGAAC 177
Query 194 TCTCAGGAAGCATACATGATGGAGATGCGAGCATCAAGATTGGTTCAAGCAGCTGATTCT 253
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 178 TCTCAGGAAGCATACATGATGGAGATGCGAGCGTCAAGATTGGTTCAAGCAGCTGATTCT 237
Query 254 CTTTTGAAACTTGTATCAGAGCTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCATTA 313
||||||||||| || || || |||||||||||||||||||||||||||||||||||| ||
Sbjct 238 CTTTTGAAACTCGTTTCGGAACTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCACTA 297
Query 314 AACGATCATGTAGAACAAAGAATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGA 373
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AATGATCATGTAGAACAAAGAATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGA 357
Query 374 TTGTTGGCTAGAATTGCTGATGATGCATCTGCTAGTCTTAAAGAGCTTGAGTCTCACTAT 433
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 358 TTGTTGGCTAGAATTGCTGATGATGCATCTGCTAGCCTTAAAGAACTTGAGTCTCACTAT 417
Query 434 TACTCTTCTGCTCAGAGATCGACTCTAGAC 463
||||||||||||||||||| ||||||||||
Sbjct 418 TACTCTTCTGCTCAGAGATTGACTCTAGAC 447
> Ahg470845 jgi|Araly1|470845|fgenesh2_kg.1__799__AT1G07950.1
Length=666
Score = 586 bits (317), Expect = 6e-167
Identities = 389/425 (92%), Gaps = 0/425 (0%)
Strand=Plus/Plus
Query 35 TCCGGTGGAGGAAGCGGACCAACAGCTGCTGCGGCAGCCGCTGCGTTACAGAAGCAAAAG 94
|||||||||||||| || ||||| ||||| || || ||||| || |||||||||||||||
Sbjct 40 TCCGGTGGAGGAAGTGGCCCAACGGCTGCCGCCGCCGCCGCGGCTTTACAGAAGCAAAAG 99
Query 95 GCGTTGTTGCAGAGAGTTGATACTGACATCACATCTGTCGTCGATAACTTCAATCAAATC 154
||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||
Sbjct 100 GCGTTGTTGCAGAGAGTAGAGACTGACATCACATCTGTCGTCGATAACTTCACGCAAATC 159
Query 155 GTCAATGTCGCAAGGGTGAGTGATCCGCCAATGAAGAACTCTCAGGAAGCATACATGATG 214
|||||||| ||||||||||||||||||| |||||||||| |||||||| |||||||||
Sbjct 160 GTCAATGTTTCAAGGGTGAGTGATCCGCCGGTGAAGAACTCGCAGGAAGCTTACATGATG 219
Query 215 GAGATGCGAGCATCAAGATTGGTTCAAGCAGCTGATTCTCTTTTGAAACTTGTATCAGAG 274
||||||||||| || ||| ||||||||||||||||||||||||||||||| | ||| ||
Sbjct 220 GAGATGCGAGCTTCTAGACTGGTTCAAGCAGCTGATTCTCTTTTGAAACTCGAATCGGAA 279
Query 275 CTGAAGCAAACCGCGATTTTTTCAGGATTTGCATCATTAAACGATCATGTAGAACAAAGA 334
||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 280 CTGAAGCAAACAGCGATTTTTTCAGGATTTGCATCGCTAAACGATCATGTAGAACAAAGA 339
Query 335 ATTGCAGAGTTTGATCAAGAGGCCGAGAAGACGAATCGATTGTTGGCTAGAATTGCTGAT 394
|| | ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct 340 ATAGGAGAGTTTGATCAAGAGGCCGAGAAGACAAATGGATTGTTGGCTAGAATAGCTGAT 399
Query 395 GATGCATCTGCTAGTCTTAAAGAGCTTGAGTCTCACTATTACTCTTCTGCTCAGAGATCG 454
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 400 GATGCATCTGCCAGTCTTAAAGAGCTCGAGTCTCACTATTACTCTTCTGCTCAGAGATTG 459
Query 455 ACTCT 459
|||||
Sbjct 460 ACTCT 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21176351895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5