BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16440.1
Length=1566
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1 2084 0.0
Ahg316818 jgi|Araly1|316818|fgenesh1_pm.C_scaffold_2001851 822 0.0
> Ahg471840 jgi|Araly1|471840|fgenesh2_kg.1__1794__AT1G16440.1
Length=1298
Score = 2084 bits (1128), Expect = 0.0
Identities = 1244/1301 (96%), Gaps = 3/1301 (0%)
Strand=Plus/Plus
Query 231 ATGAGCTCCCAAAGCAACAACAGCGAAAGCACATCCACTAATAATTCCTCTAAGCCTCAC 290
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAGCTCACAAAGCAACAACAGCGAAAGCACATCCTCTAATAATTCCTCTAAGCCTCAC 60
Query 291 ACGGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTT 350
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 ACAGGAGGAGATATTAGGTGGGACGCAGTGAATTCCTTGAAATCTAGAGGAATCAAGCTT 120
Query 351 GGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGCTACGGAGATATCGGTAGTGTTTAT 410
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 121 GGAATCAGCGATTTTCGTGTTTTGAAACGGCTAGGGTACGGAGATATCGGAAGTGTTTAT 180
Query 411 CTTGTTGAACTCAAAGGGGCAAATCCCACGACGTATTTCGCGATGAAAGTGATGGACAAG 470
||||||||||||||||| |||||||| || || ||||||||||||||||| ||||| |||
Sbjct 181 CTTGTTGAACTCAAAGGCGCAAATCCGACTACATATTTCGCGATGAAAGTAATGGATAAG 240
Query 471 GCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACTGAAAGAGAGATCTTGTCT 530
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 241 GCTTCTCTTGTGAGCAGGAACAAGCTGTTGAGAGCTCAGACGGAGAGAGAGATCTTGTCT 300
Query 531 CAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTAT 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CAGCTTGATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTAT 360
Query 591 TGCTTGGTGATGGAGTTTTGTAGTGGTGGAAATCTCTATTCCTTGAGACAGAAGCAACCC 650
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 361 TGCTTGGTCATGGAGTTTTGTAGCGGCGGAAATCTCTATTCCTTGAGACAGAAGCAACCT 420
Query 651 AACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTATTAGCATTA 710
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 421 AACAAGTGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTGTTAGCGTTA 480
Query 711 GAGTACTTACATATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTTCTGGTT 770
||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 481 GAGTATTTACACATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTACTGGTT 540
Query 771 CGAGACGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAAC 830
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CGAGATGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAAT 600
Query 831 CCAACACTTGTCAAATCTTTCAACGGCGGTGGAACCACCGGAATCATTGACGACAATGCG 890
||||||||||||||||||||||||||||| |||||||| |||||| |||| |||||||||
Sbjct 601 CCAACACTTGTCAAATCTTTCAACGGCGGCGGAACCACGGGAATCGTTGAAGACAATGCG 660
Query 891 GCGGTACAAGGATGTTACCAACCATCCGCATTCTTCCCACGAATGCTCCAATCCTCGAAG 950
||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 661 GCGGTCCAAGGATGTTACCAACCATCCACATTCTTCCCACGAATGCTCCAATCATCGAAG 720
Query 951 AAAAACCGTAAATCCAAATCCGATTTCGATGGATCGTTACCAGAACTCATGGCAGAGCCG 1010
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 721 AAAAACCGTAAATCCAAATCCGATTTCGATGGATCATTACCAGAACTCATGGCAGAGCCG 780
Query 1011 ACAAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATC 1070
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 ACGAACGTGAAATCAATGTCTTTTGTCGGAACACACGAGTATTTAGCGCCGGAGATTATC 840
Query 1071 AAAAACGAAGGTCACGGAAGCGCCGTCGATTGGTGGACGTTCGGGATATTCATCTACGAG 1130
|||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||
Sbjct 841 AAAAACGAAGGTCACGGAAGCGCCGTAGATTGGTGGACGTTTGGGATTTTCATCTACGAG 900
Query 1131 CTTCTTCATGGAGCAACACCATTTAAAGGACAAGGAAACAAAGCCACGCTTTATAATGTA 1190
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 901 CTTCTTCATGGAGCAACGCCATTTAAAGGACAAGGAAACAAAGCGACGCTTTATAATGTA 960
Query 1191 ATCGGACAACCTCTTAGATTCCCGGAATATTCTCAGGTTAGCTCGACGGCGAAGGATTTG 1250
|||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct 961 ATCGGACAACCTCTGAGATTCCCGGAATATTCTCAGGTTAGCTCAAAGGCAAAGGATTTA 1020
Query 1251 ATCAAAGGTTTATTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACG 1310
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 ATCAAAGGTTTGTTGGTAAAAGAGCCGCAAAACAGAATTGCGTATAAGCGAGGCGCGACG 1080
Query 1311 GAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACA 1370
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 GAGATCAAGCAACATCCATTTTTTGAAGGTGTGAATTGGGCGTTGATTCGTGGAGAAACG 1140
Query 1371 CCGCCACATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAGGAGAAGGAGTCT 1430
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1141 CCGCCGCATTTGCCGGAGCCGGTGGATTTCTCGTGTTATGTGAAGAAAGAGAAGGAGTCT 1200
Query 1431 TTGCCGCCGGCGGCAACGGAAAAGAAGAGCAAGATGTTTGATGAAGCTAATAAGAGCGGT 1490
|||||| |||||||||| |||||||||||||| | || |||||||||| | |||||||
Sbjct 1201 TTGCCGGCGGCGGCAACCGAAAAGAAGAGCAAAACGTGTGATGAAGCTCA---GAGCGGT 1257
Query 1491 AGTGATCCTGATTACATTGTTTTTGAATATTTTTAGCCATA 1531
||||||||||||||||||||||||||||||||||||| |||
Sbjct 1258 AGTGATCCTGATTACATTGTTTTTGAATATTTTTAGCTATA 1298
> Ahg316818 jgi|Araly1|316818|fgenesh1_pm.C_scaffold_2001851
Length=1677
Score = 822 bits (445), Expect = 0.0
Identities = 1014/1278 (79%), Gaps = 81/1278 (6%)
Strand=Plus/Plus
Query 242 AAGCAACAACAGCGAAAGCACATCCACTAATAATTCCTCTAAGCCTCACACGGGAGGAGA 301
|||||||| || || ||||| | | || |||| |||||||||| ||||| || || ||
Sbjct 324 AAGCAACAGCATTGAGAGCAC-TTC-CT-CTAATCCCTCTAAGCCACACACAGGTGGTGA 380
Query 302 TATTAGGTGGGACGCAGTGAAT-TCCTTGAAATCTAGAGGAATCAAGCTTGGAATCAGCG 360
||||||||||| || || ||| | |||| || | |||| || |||| || |||||||
Sbjct 381 CATTAGGTGGGATGCTGTCAATAT-GTTGACCTCCAAAGGAGTCCAGCTCGGGATCAGCG 439
Query 361 ATTTTCGTG-TT-TTGAAACGGCTAGGCTACGGAGATATCGGTAGTGTTTATCTTGTTGA 418
||||||| | || || |||||||| || || ||||| || || |||||||| || || ||
Sbjct 440 ATTTTCG-GCTTCTT-AAACGGCTCGGTTATGGAGACATTGGGAGTGTTTACCTAGTCGA 497
Query 419 ACTCAAAGGGGCAAATCCCACGACGTATTTCGCGATGAAAGTGATGGACAAGGCTTCTCT 478
||| || || || || || || |||||||| ||||||||||||||||| ||||| ||
Sbjct 498 GCTC--AGAGG--AA-CCAAC-ACCTATTTCGCCATGAAAGTGATGGACAAAGCTTC-CT 550
Query 479 T-G-TGAGCAGGAACAAGCTGTTGAGAGCTCAGACTGAAAGAGAGATCTTGTCTCAGCTT 536
| | | |||||||||||||||||| ||||||| || || |||||||||||||||||||||
Sbjct 551 TAGCT-AGCAGGAACAAGCTGTTGCGAGCTCAAACAGAGAGAGAGATCTTGTCTCAGCTT 609
Query 537 GATCATCCTTTCTTGCCTACTCTTTACTCTCACTTCGAAACTGATAAATTCTATTGCTTG 596
||||| || ||| |||| ||||| ||||| || || ||||| ||||| |||||||||||
Sbjct 610 GATCACCCCTTCCTGCCCACTCTATACTCGCATTTTGAAACAGATAAGTTCTATTGCTTA 669
Query 597 GTGATGGAGTTTTGTAGTGGTGGAAATCTCTATTCCTTGAGACAGAAGCAACCCAACAAG 656
|| |||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 670 GTCATGGAGTTTTGTGGTGGTGGTAATCTCTATTCCTTGAGACAGAAGCAACCAAACAAA 729
Query 657 TGTTTCACAGAAGACGCTGCAAGGTTCTTTGCATCAGAAGTGTTATTAGCATTAGAGTAC 716
||||||||||| ||||| ||||| |||||||| || |||||| |||| ||||| ||||||
Sbjct 730 TGTTTCACAGAGGACGCCGCAAGATTCTTTGCTTCTGAAGTGCTATTGGCATTGGAGTAC 789
Query 717 TTACATATGCTCGGAATCGTATACCGAGATTTAAAGCCAGAGAACGTTCTGGTTC-GAGA 775
|| || ||||||||||| || ||||| || || |||||||| || ||||| | || ||||
Sbjct 790 TTGCACATGCTCGGAATTGTTTACCGTGACTTGAAGCCAGAAAATGTTCTAG-TCAGAGA 848
Query 776 CGACGGTCACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAACCCAAC 835
|||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 849 CGACGGACACATTATGCTCTCCGATTTCGATTTATCCCTCCGATGTTCAGTCAGTCCAAC 908
Query 836 ACTTGTCAAATC-T--T-T---CAA-C-G--G-CGGTGGAACC--A--C---CGGAATC- 875
|| |||||||| | | | || | | | ||| |||| | | | ||| |
Sbjct 909 CCTCGTCAAATCATCCTCTGTTCACGCCGCCGGCGGCGGAAGCGGAAGCAGTCGGCCTGT 968
Query 876 A--T-TGA-CGAC-A--ATGCGGCGGTACAAGGATGT-TACCAACCATCCGCATTCTTCC 927
| | | | |||| | | |||||||| ||||| ||| | |||||| || |||||||||
Sbjct 969 AGGTCTAATCGACGAGGACGCGGCGGTGCAAGGTTGTAT-CCAACCGTCAACATTCTTCC 1027
Query 928 CACGAATGCTCCAATCCTCGAAGAAAAACCGTAAATCCAAATCCGATTTCG-A-TG---G 982
| || || | || || ||||||| || || ||| | ||||| ||||||| | | |
Sbjct 1028 CGCGGATTTTACAGTCGTCGAAGAGGAATCGAAAAGCGAAATCGGATTTCGGACTCTTCG 1087
Query 983 AT--CGT-T--A--CCAGAACTCATGGCAGAGCCGACAAACGTGAAATCAATGTCTTTTG 1035
| || | | |||||||||||||| ||||| || ||||| ||||||||||| || |
Sbjct 1088 TTAACGGATCCATGCCAGAACTCATGGCGGAGCCAACGAACGTCAAATCAATGTCATTCG 1147
Query 1036 TCGGAACACACGAGTATTTAGCGCCGGAGATTATCAAAAACGAAGGTCACGGAAGCGCCG 1095
|||||||||||||||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1148 TCGGAACACACGAGTATTTAGCACCGGAGATTATCCGTGGTGAAGGACACGGAAGCGCCG 1207
Query 1096 TCGATTGGTGGACGTTCGGGATATTCATCTACGAGCTTCT-TCATGGAGCAACACCATTT 1154
| ||||||||||| ||||| || ||||||||||||||||| | ||||||| || || |||
Sbjct 1208 TAGATTGGTGGACCTTCGGAATTTTCATCTACGAGCTTCTCT-ATGGAGCGACGCCGTTT 1266
Query 1155 AAAGGACAAGGAAACAAAGCCACGCTTTATAATGTAATCGGACAACCTCTTA-GATTCCC 1213
||||||||||||||| || |||||| | || || ||||||||| || ||| |||||||
Sbjct 1267 AAAGGACAAGGAAACCGTGCAACGCTTCACAACGTGATCGGACAAGCT-TTAAGATTCCC 1325
Query 1214 GGAATATTC-TCAGGTTAGCTCGACGGCGA-AGGATTTGATCAAAGGTTTATTGGTAAAA 1271
|| ||| ||| || |||||| |||||| || || | |||||||| ||||| || |||
Sbjct 1326 TGAGG-TTCCTCATGTGAGCTCGGCGGCGAGAG-ATCTCATCAAAGGATTATTAGTTAAA 1383
Query 1272 GAGCCGCAAAA-CAGAATTGCGTATAAGCGAGGCGCGACGGAGATCAAGCAACATCCATT 1330
|| || ||||| | |||| || || || || |||||||||||||||||||| ||||| ||
Sbjct 1384 GAACCACAAAAAC-GAATCGCTTACAAACGTGGCGCGACGGAGATCAAGCAGCATCCGTT 1442
Query 1331 TTTTGAAGGTGTGAATTGGGCGTTGATTCGTG-GAGAAACACCGCCACATTTGCCGGAGC 1389
||| |||||||||||||||||| ||||||| | | | ||| ||||| ||| | || || |
Sbjct 1443 TTTCGAAGGTGTGAATTGGGCGCTGATTCG-GAGTGCAACGCCGCCGCATGTACCAGAAC 1501
Query 1390 CGGTGGATTTCTCGTGTTATGTGAAG-AAGGAGAAGGAGTCTTTGCCGCC-G--G-CGGC 1444
|||||||||| |||||||| | ||| ||||| || |||||| || || | | | ||||
Sbjct 1502 CGGTGGATTTTTCGTGTTACGC-AAGCAAGGATAAAGAGTCTATGGCGGCTGTTGACGGC 1560
Query 1445 AACGGAAAAGAAGAGCAA 1462
|||||| ||||| |||
Sbjct 1561 GGCGGAAA-GAAGAACAA 1577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58658977300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5