BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16445.1
Length=856
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471841 jgi|Araly1|471841|fgenesh2_kg.1__1795__AT1G16445.1 1354 0.0
> Ahg471841 jgi|Araly1|471841|fgenesh2_kg.1__1795__AT1G16445.1
Length=857
Score = 1354 bits (733), Expect = 0.0
Identities = 819/860 (95%), Gaps = 7/860 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTGGGTTCTTTCAAG-CAGAGATGTCAATTTTATCCTCTACGTTGGCGCGCTC 59
||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 1 ATGGCGGCTGGGTTCTTTC-AGTCAGAGATGTCAATGTTATCCTCTACGTTGGCGCGCTC 59
Query 60 ATACTCGT-TACCTATCCGCAAAACGCTTATGACCTTCGATTTTCGAATTGCAATGCAAC 118
|||||| | | || ||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 60 ATACTC-TATTCCCATCCGCAAAACGCTTATGACCTTCGGTTTTCGAATTGCAGTGCAAC 118
Query 119 GAAACCCTTGTCTCAGAATTCGACGTTCTTGTGTAGCTGCTTTTAGCTCGACTCCTTCGC 178
|||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 119 GAAACCCTTGTCCCAGAATTCGACGTTCTCGTGTAGCTGCTTTTAGCTCGTCTCCTTCGC 178
Query 179 ATTCACGAAATTTTCCAATTCGAGGACTAGAGGATGTTTTTGTTGGTTATCTATTTGGGA 238
|||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 179 ATTCACGAGATTTCCCAATTCGAGGAGTAGAGGATGTTTTTGTTGGTTATCTATTTGGGA 238
Query 239 GGAAGAAGGCAACGGAAGTAGCTCATGTTGTGTGGGAGCAGGTAATCCAAAAGGGGGATA 298
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GGAAGAAGGCAACAGAAGTAGCTCATGTTGTGTGGGAGCAGGTAATCCAAAAGGGGGATA 298
Query 299 CGGTCATTGATGCTACCTGTGGAAACGGGAACGATACTTTAGCAATGTTGAAGATGGTTA 358
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 TGGTCATTGATGCTACGTGTGGAAACGGGAACGATACTTTAGCAATGTTGAAGATGGTTA 358
Query 359 TGCATGATTCTGTTGGTTGTGGTGGTTATGTCTATGCTATGGACATTCAAAAAGATGCCA 418
|| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TGAATGATTCTGTTGGTTGTGGTGGCTATGTCTATGCTATGGACATTCAAAAAGATGCCA 418
Query 419 TTGAAAGCACTTCATCTTTGCTCGATCAAGCCGTTGGTTCAAAAGAGAAGGAATGCGTCA 478
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGAGAGCACTTCATCTTTGCTGGATCAAGCCGTTGGTTCAAAAGAGAAGGAATGCGTCA 478
Query 479 AACTTTTTAACCTCTGTCATAGTAAAATGGGAGAGATTGTCCCTGAAAACGCCCG-AGTG 537
||||||||||| |||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 479 AACTTTTTAACATCTGTCATAGTAAAATGGGAGAGATTGTCCCTGAAAACTCCCGTA-TA 537
Query 538 AGGATGGTTGCATTCAATCTGGGGTATCTTCCAGGAGGCAACAAGTCGATAATCACTCTC 597
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 538 AGGATGGTTGCATTCAATCTGGGGTATCTTCCAGGGGGCAACAAGTCGATAATCACTGTC 597
Query 598 TCGGATACAACATTATCGGCATTGAAAGCTGCTGAGAGAATCTTAAAGCCCGGTGGTCTC 657
||||||||||| ||| |||||||||| ||||||||||||||||||| ||||||||| |||
Sbjct 598 TCGGATACAACTTTAGCGGCATTGAAGGCTGCTGAGAGAATCTTAATGCCCGGTGGCCTC 657
Query 658 ATCAGTTTGGTGGTTTACATTGGCCATCCTGGTGGAAGAGAAGAGTTAGAAGTGGTTGAA 717
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 ATCAGCTTGGTGGTTTACATTGGCCATCCTGGTGGAAGAGAAGAGTTAGAAGTGGTTGAA 717
Query 718 GCTTTTGGGTCGGGTTTACCGGTCAGTGATTGGATCTGCTGCAAATTCCAAATGTTGAAC 777
|||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct 718 GCTTTTGGGTCGAGTTTACCTGTCAGTGATTGGGTCTGCTGCAAATTCCAAATGTTGAAC 777
Query 778 CGACCGTTAGCTCCAGTTCTTGTTTTCATGTTCAAGAGAGAAAACTGAAAAG-TGATTTA 836
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 778 CGACCGTTAGCTCCAGTTCTTGTTTTCATGTTCAAGAGAGAAAACTGAAAAACTGATTTA 837
Query 837 TTTTGATCCACCAGAAGCTT 856
|||||||| |||||||||||
Sbjct 838 TTTTGATCTACCAGAAGCTT 857
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31680144027
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5