BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16460.2
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471843 jgi|Araly1|471843|fgenesh2_kg.1__1797__AT1G16460.1 1960 0.0
Ahg927340 jgi|Araly1|927340|scaffold_202901.1 835 0.0
Ahg950310 jgi|Araly1|950310|scaffold_802197.1 231 8e-60
> Ahg471843 jgi|Araly1|471843|fgenesh2_kg.1__1797__AT1G16460.1
Length=1416
Score = 1960 bits (1061), Expect = 0.0
Identities = 1296/1405 (92%), Gaps = 33/1405 (2%)
Strand=Plus/Plus
Query 1 ACTAGTGATCAGTGATAATCTATTAATCATCTAGGTGGCAGAAGCAGCATCGTTGAGAAC 60
|||||||||||||||| | | |||||| | |||||||| |||||||||||||||||||
Sbjct 15 ACTAGTGATCAGTGATCACCCGGTAATCACCCAGGTGGCAAAAGCAGCATCGTTGAGAAC 74
Query 61 GAAGAAGCTTGAAAAAGTTGCGAGCTCAGAGAATC---TGGAAGTAGCAAAATTTGGCGG 117
||||||||||||||||||||||||||| ||||||| ||| ||||||||||| ||||||
Sbjct 75 GAAGAAGCTTGAAAAAGTTGCGAGCTCGGAGAATCTGGTGGCAGTAGCAAAATCTGGCGG 134
Query 118 CTTTAACTCAGCAATTTG-T----T-C-T-GTA--CAT--GAAGAGAGCATTCAGCTCAC 165
|||||| ||| ||| ||| | | | | ||| | | ||||||||||||||| ||||
Sbjct 135 CTTTAAGTCAACAA-TTGTTCCACTACATGGTATTC-TGAGAAGAGAGCATTCAGGTCAC 192
Query 166 AGTTACGCTCTGCCTATCCAGCTTCTAAATCTACTCACTTTGGTCGAGTCATGGCTTCTT 225
||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 193 AGTTACGCTTTGCCTATTCAGCTTCTAAATCTACTCACGTTGGTCGAGTCATGGCTTCTT 252
Query 226 CTGGATCTGAGGCAAAAGCTAATTACG---CA-CC-C-ATATCTACCAATGAACCTGTTG 279
||||||||| |||||||| |||||||| || || | |||||||||||||||||||| |
Sbjct 253 CTGGATCTGGGGCAAAAGTTAATTACGCAACATCCTCTATATCTACCAATGAACCTGTCG 312
Query 280 TGTCTGTTGATTGGCTCCACTCTAATCTTGGAGATGCTGATATAAAGGTTTTGGATGCCT 339
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 313 TGTCTGTTGATTGGCTTCACTCTAATCTTAGAGATGCTGATATAAAGGTTTTGGATGCCT 372
Query 340 CATGGTACATGGCACATGAGCAAAGAAATCCAATCCAAGAGTATCAAGTTGCTCATATTC 399
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 373 CATGGTACATGCCACATGAGCAAAGAAATCCAATCCAAGAGTATCATGTTGCTCATATTC 432
Query 400 CAGGTGCTCTCTTCTTTGATTTGAATGGAATAGCAGATCGAAAAACAAATTTACGACACA 459
|||||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||
Sbjct 433 CAGGTGCTCTCTTCTTTGATGTGGATGGAATATCAGATCGAAAAACAAATTTACTACACA 492
Query 460 TGCTACCATCTGAGGAAGCTTTTGCTGCTGGTTGTTCTGCTCTTGGAATCGAGAACAACG 519
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 493 TGCTACCATCCGAGGAAGCTTTTGCTGCTGGTTGTTCTGCTCTTGGAATCGAGAACAAAG 552
Query 520 ATGGAGTGGTTGTGTATGATGGAATGGGGCTCTTTAGTGCAGCTCGTGTATGGTGGATGT 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ATGGAGTGGTTGTGTATGATGGAATGGGGCTCTTTAGTGCAGCTCGTGTATGGTGGATGT 612
Query 580 TTAGAGTCTTTGGACATGACAAAGTATGGGTACTTGATGGAGGCTTGCCGAAATGGCGTG 639
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 TTAGAATCTTTGGACATGACAAAGTATGGGTACTTGATGGAGGCTTGCCGAAATGGCGTG 672
Query 640 CTTCAGGCTATGACGTTGAATCCAGTGTTTCAAATGATGCCATTTTGAAAGCCAGTGCAG 699
|||| |||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 673 CTTCCGGCTATGATGTTGAATCCAGTGCTTCAAGTGATGCCATTTTGAAAGCCAGTGCAG 732
Query 700 CAACTGAGGCTATAGAGAAGATCTA-TCAAGGACAAACAATTAGCCCAATAACTTTTCAG 758
||||||||||||||||||| || || |||||||||||||||||| |||||||||||||||
Sbjct 733 CAACTGAGGCTATAGAGAAAAT-TAATCAAGGACAAACAATTAGTCCAATAACTTTTCAG 791
Query 759 ACGAAGTTCCGGCCACATCTTGTATTGGCACTTGATCAGGTGAAGGAAAACATCGAGGAT 818
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 792 ACGAAGTTCCGGCCACATCTTGTATTGGCACTTGATCAGGTGAAGCAAAACATCGAGGAT 851
Query 819 AAGACTTATCAGCACATCGATGCGCGTTCAAAGGCTAGATTTGACGGTATTGCTCCAGAA 878
|||||||||||||||||||||| ||| ||||| |||||||||||||||||||||||||||
Sbjct 852 AAGACTTATCAGCACATCGATGGGCGATCAAAAGCTAGATTTGACGGTATTGCTCCAGAA 911
Query 879 CCTTGGAAGGGTTTACCGAGTGGTCATATACCCGGTAGCAAGTGTGTCCCTTTTCCCCTA 938
||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 912 CCTCGGAAGGGAATACCGAGTGGTCATATACCCGGTAGCAAGTGTGTACCTTTTCCCCAA 971
Query 939 ATGTTTGATTCCTCTCAAACACTGTTACCAGCAGAGGAGCTGAAGAAGCAGTTTGAACAG 998
||||||||||||||||||||| || | |||||||||||||||||||||| |||||||||
Sbjct 972 ATGTTTGATTCCTCTCAAACAATGCTGCCAGCAGAGGAGCTGAAGAAGCGGTTTGAACAA 1031
Query 999 GAAGACATATCTCTGGACAGTCCGATTGCGGCCTCATGTGGAACCGGTGTAACAGCTTGT 1058
|||||||| || |||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 1032 GAAGACATTTCACTGGACAGTCCGATCGTGGCCTCATGTGGAACCGGTGTAACAGCTTGT 1091
Query 1059 ATTTTGGCATTGGGACTTTATCGTCTGGGAAAAACTAATGTGGCAATCTATGATGGGTCT 1118
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1092 ATTGTGGCATTGGGACTTTATCGTCTGGGAAAAACCGATGTGGCAATCTATGATGGGTCT 1151
Query 1119 TGGACTGAATGGGCAACTGCACCAAACTTGCCCATAGTGGGTTCTTCTTCATAAGAAAGT 1178
||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||
Sbjct 1152 TGGACTGAATGGGCAACCGAACCAAACTTGCCCATAATGGGTTCTTCTTCATAAGAAAGT 1211
Query 1179 CCAAGAAAAAGCTACAAGATCACAAGCCAGTGGATATATATTTATAAG-CTTAGCTTGGT 1237
||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||
Sbjct 1212 CCAAGAAAAAGCTACAAGATCACAAGCCAGTTGATAT-TC---ATAAGGCTTAGCTTGGT 1267
Query 1238 TCAATCCATTTCTGTGTTAAACTTTAACAAATTGCTGGGAGGGTTGTATT---AGTATTA 1294
||||||||||| ||| ||||| |||| | |||||||||||||||||| || | |||||
Sbjct 1268 TCAATCCATTTGTGTTTTAAATTTTAGCCAATTGCTGGGAGGGTTGTCTTGTTATTATTA 1327
Query 1295 TACATCAGTATTCAGGATTCTTGAGTTTGGTCTCATCTTTGTGGAGATTGATTAAAAGTC 1354
|||||||||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||
Sbjct 1328 TACATCAGTATTCAAGATTCTTGAGTTTGGTCTCTTCTCTGTGGAGATTGATAAAAAGTC 1387
Query 1355 TTAATGTTCTTGTTGTTTGTTACAC 1379
|| ||||||||||||| ||||||||
Sbjct 1388 TTTATGTTCTTGTTGTCTGTTACAC 1412
> Ahg927340 jgi|Araly1|927340|scaffold_202901.1
Length=1180
Score = 835 bits (452), Expect = 0.0
Identities = 806/974 (83%), Gaps = 36/974 (4%)
Strand=Plus/Plus
Query 208 GTCGAGTCATGGCTTCTTCTGGA-TCTGAGGCAAAAGCTAATTA--CG-CA-C--CCATA 260
|||||| |||||||||| ||||| | |||| ||||||| ||| || || | |||||
Sbjct 184 GTCGAGCCATGGCTTCTACTGGAGT-TGAGACAAAAGCCGGTTACTCGACATCATCCATA 242
Query 261 TCTACCAATGAACCTGTTGTGTCTGTTGATTGGCTCCACT-CTAATCTTGGAGATG-CTG 318
|| |||| |||||||||||| |||||||||||||| || | |||||||| |||| | |||
Sbjct 243 TCAACCAGTGAACCTGTTGTTTCTGTTGATTGGCTTCA-TGCTAATCTTAGAGA-GCCTG 300
Query 319 ATATAAAGGTTTTGGATGCCTCATGGTACATGGCAC-ATGAGCAAAGAAATCCAATCCAA 377
|| | ||| |||||||||| ||||||||||| || | ||||||| |||||||||||||||
Sbjct 301 ATTTGAAGATTTTGGATGCTTCATGGTACAT-GCCCGATGAGCAGAGAAATCCAATCCAA 359
Query 378 GAGTATCAAGTTGCTCATATTCCAGGTGCTCTCTTCTTTGATTTGAATGGAATAGCAGAT 437
|| ||||| || ||||||||||| | |||||||||||||||||| |||||||| |||||
Sbjct 360 GAATATCAGGTCGCTCATATTCCCCGCGCTCTCTTCTTTGATTTGGATGGAATATCAGAT 419
Query 438 CGAAAAACAAATTTACGACACATGCTACCATCTGAGGAAGCTTTTGCTGCTGGTTGTTCT 497
|||| ||| | ||| | ||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 420 CGAAGAACTAGTTTGCCACATATGTTACCCTCTGAGGAAGCTTTTGCTGCTGGTTGTTCT 479
Query 498 GCTCTTGGAATCGAGAACAACGATGGAGTGGTTGTGTATGATGGAATGGGGCTCTTTAGT 557
||||||||||| || ||||| |||| ||||||||| |||||||||| |||| ||||||||
Sbjct 480 GCTCTTGGAATTGATAACAAAGATGAAGTGGTTGTCTATGATGGAAAGGGGATCTTTAGT 539
Query 558 GCAGCTCGTGTATGGTGGATGTTTAGAGTCTTTGGACATGACAAAGTATGGGTACTTGAT 617
||||| ||||||||||||||||| |||| ||||||||||| ||| | ||||| || |||
Sbjct 540 GCAGCCCGTGTATGGTGGATGTTCCGAGTTTTTGGACATGAAAAAATTTGGGTGCTCGAT 599
Query 618 GGAGG-CTTGCCGAA-ATGGCGTGCTTCAGGCTATGACGTTGAATCCAGTGTTTCAAATG 675
||||| || || || ||||||||| ||||| ||||| |||||||| |||| ||| ||
Sbjct 600 GGAGGGCTA-CC-AAGATGGCGTGCATCAGGTTATGATGTTGAATCTAGTGCATCAGGTG 657
Query 676 ATGCCATTTTGAAAGCCAGTGCAGCAACTGAGGCTATAGAGAAGATCTATCAAGGACAAA 735
|||| ||| ||||||||||||| |||| ||||||||||||||| || |||||||||||||
Sbjct 658 ATGCTATTCTGAAAGCCAGTGCCGCAAGTGAGGCTATAGAGAAAATTTATCAAGGACAAA 717
Query 736 CAATTAGCCCAATAACTTTTCAGACGAAGTTCCGGCCACATCTTGTATTGG-CACTTGAT 794
| | || || ||||| |||||||| ||||||| ||||||||| || | || ||||||||
Sbjct 718 CCGTCAGTCCGATAACCTTTCAGACAAAGTTCCAGCCACATCTAGTGT-GGACACTTGAT 776
Query 795 CAGGTGAAGGAA-AACATCGAGGATAAGACTTATCAGCACATCGATGCGCGTTC-AAAGG 852
||||| ||| || || || |||||| ||||||||| ||||| || || ||||| ||||
Sbjct 777 CAGGTCAAG-AACAATATGGAGGATCCGACTTATCAACACATAGACGCTCGTTCCAAAGC 835
Query 853 CTAGATTTGACGGTATTGCTCCAGAACCTTGGAAGGGTTTACCGA-GTGGTCATATACCC 911
| || ||||| |||| |||||||||||| | ||||| || || | || ||||||||
Sbjct 836 C-AGGTTTGATGGTACTGCTCCAGAACCCCGTAAGGGAATAA-GAAGCGGCCATATACCT 893
Query 912 GGTAGCAAGTGTGTCCCTTTTCCCCTA-ATGTTTGATTCCTCTCAA-ACACTGTTACCAG 969
|| ||||| |||||||||||||| | | ||||||||||| | | || |||||||||||||
Sbjct 894 GGAAGCAAATGTGTCCCTTTTCCTC-AGATGTTTGATTCTTGT-AACACACTGTTACCAG 951
Query 970 CAGAGGAGCTGAAGAAGC-AGTTTGAACAGGAAGACATATCTCTGGACA-GTCCGATTGC 1027
|||| ||||||||||| | | |||||||| |||||||| || ||||||| | || |||
Sbjct 952 CAGACGAGCTGAAGAAACGA-TTTGAACAAGAAGACATCTCACTGGACAAG-CCTATTAT 1009
Query 1028 GGCCTCATGTGGAACCGGTGTAACAGCTTGTATTTTGGCATTGGGACTTTATCGTCTGGG 1087
|||||| ||||| || || ||||||||||| || ||||| |||| ||| | || |||||
Sbjct 1010 GGCCTCGTGTGGGACTGGCGTAACAGCTTGCATCCTGGCAATGGGGCTTCACCGGCTGGG 1069
Query 1088 AAAAACTAATGTGGCAATCTATGATGGGTCTTGGACTGAATGGGCAACTGCA-CCAAACT 1146
||||| | ||| | ||||||||||||| |||||||||||||| || ||| ||| |||
Sbjct 1070 GAAAACCGACGTGCCGGTCTATGATGGGTCGTGGACTGAATGGGCGAC-GCAACCAGACT 1128
Query 1147 TGCCCATAGTGGGT 1160
||||||||| ||||
Sbjct 1129 TGCCCATAGAGGGT 1142
> Ahg950310 jgi|Araly1|950310|scaffold_802197.1
Length=571
Score = 231 bits (125), Expect = 8e-60
Identities = 137/143 (96%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 657 GAATCCAGTGTTTCAAATGATGCCATTTTGAAAGCCAGTGCAGCAACTGAGGCTATAGAG 716
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 33 GAATCCAGTGCTTCAAGTGATGCCATTTTGAAAGCCAGTGCAGCAACTGAGGCTATAGAG 92
Query 717 AAGATCTATCAAGGACAAACAATTAGCCCAATAACTTTTCAGACGAAGTTCCGGCCACAT 776
|| ||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||
Sbjct 93 AAAATCTATCAAGGACAAACAATTAGTCCAATAACTTTTCAGACTAAGTTCCGGTCACAT 152
Query 777 CTTGTATTGGCACTTGATCAGGT 799
|||||||||||||||||||||||
Sbjct 153 CTTGTATTGGCACTTGATCAGGT 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5