BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16470.1
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471845 jgi|Araly1|471845|fgenesh2_kg.1__1799__AT1G16470.2 1520 0.0
Ahg927338 jgi|Araly1|927338|scaffold_202899.1 865 0.0
> Ahg471845 jgi|Araly1|471845|fgenesh2_kg.1__1799__AT1G16470.2
Length=1177
Score = 1520 bits (823), Expect = 0.0
Identities = 912/952 (96%), Gaps = 18/952 (2%)
Strand=Plus/Plus
Query 121 AGCTTTCGCTAATTTGCTTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACC 180
||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 226 AGCTTTCGCCGATTTGATTAAGGAGCTATGGGAGATAGTCAGTACTCGTTTTCTCTCACC 285
Query 181 ACTTTCAGCCCATCTGGTAAGCTGGTGCAGATAGAACATGCCCTTACAGCTGTTGGATCT 240
||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 286 ACTTTCAGCCCATCTGGGAAGCTGGTTCAGATAGAACATGCTCTTACAGCTGTTGGATCT 345
Query 241 GGCCAAACATCTTTAGGGATTAAAGCTTCTAATGGAGTTGTCATTGCAACTGAAAAGAAG 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 346 GGCCAAACATCTTTGGGGATTAAAGCTTCTAATGGAGTTGTCATTGCAACTGAAAAGAAA 405
Query 301 TTGCCTTCTATTCTGGTTGATGAAGCATCTGTTCAAAAAATTCAGCATTTGACTCCTAAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 406 TTGCCTTCTATTCTGGTTGATGAAGCATCTGTTCAAAAAATTCAGCATTTGACTCCTAAT 465
Query 361 ATTGGAGTTGTTTACAGTGGCATGGGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGG 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 466 ATTGGAGTTGTATACAGTGGCATGGGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGG 525
Query 421 AAACAGGCTGAGCAATATCTTCGTCTGTACAAAGAACCCATCCCTGTTACCCAACTTGTA 480
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 526 AAACAGGCTGAGCAATATCTCCGACTGTACAAAGAACCCATCCCTGTTACCCAACTTGTA 585
Query 481 AGGGAAACCGCTACTGTTATGCAAGAGTTTACTCAATCGGGAGGTGTTAGGCCTTTCGGG 540
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 586 AGGGAAACCGCTACTGTTATGCAAGAGTTTACTCAATCGGGTGGTGTTAGGCCTTTCGGG 645
Query 541 GTTTCCTTGCTGGTGGCTGGATATGATGACAAGGGTCCACAATTGTATCAGGTGGATCCA 600
|||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 646 GTTTCCCTGCTGGTGGCTGGATATGACGACAAGGGTCCCCAATTGTATCAGGTGGATCCA 705
Query 601 TCTGGCTCTTATTTCTCCTGGAAAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 706 TCTGGCTCTTATTTCTCCTGGAAAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAA 765
Query 661 ACCTTCCTTGAGAAAAGGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 ACCTTCCTTGAGAAAAGGTACACAGAAGACATGGAACTTGACGATGCCATTCACACAGCG 825
Query 721 ATACTGACATTGAAAGAAGGCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 ATACTGACATTGAAAGAAGGCTTTGAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGC 885
Query 781 AAAATCGGTGCTGACAAAGTTTTCAGGGTACTAACACCAGCAGAGATCGATGATTACCTT 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 886 AAAATCGGTGCTGACAAAGTTTTCAGGGTACTAACACCAGCGGAGATCGATGATTACCTT 945
Query 841 GCTGAAGTCGAGTAACTCCCAGCATAGTCTAGCAACAAA---G--TTTAAGACCGGAATT 895
||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||
Sbjct 946 GCTGAAGTCGAGTAACTCCTAGCATAGTCTAGCAACAAACATGCGTTTAAGACAGGAATT 1005
Query 896 TCGTGGCATTTACAG--TCTTAAAGAGTTGTTTTTT-CTGTAAAACTTTGGATCTTTAAA 952
||||||||||| ||| ||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1006 TCGTGGCATTTGCAGAGTCTTAAAGAGTTGTTTTTTTCTGTAAAACTT-GGATCTTTAAA 1064
Query 953 TAGTTTGTTGCTGAACACAAGCTGAGTGTCTCT-------CAATAACTAATGAAATCTGT 1005
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1065 TAGTTTGTTGCTGAACACAAGCTGAGTGTTTCTTATGATTCAATAACTAATGAAATCTGT 1124
Query 1006 TTCtttttttCT--CACTCAGTGAAGGTTTCAGAGAAATCTTATAGTAGTCT 1055
|||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1125 TTCTTTTTTTCTTTCACTCAGTGAAGGTCTCAGAGAAATCTTAGAGTAGTCT 1176
Score = 87.9 bits (47), Expect = 1e-16
Identities = 49/50 (98%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 73 ctctctctctGCAACTAATCACTTGTTCGATCTCGAAGCTGAAGCTAAAG 122
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CTCTCTCTCTGCAACTAATCGCTTGTTCGATCTCGAAGCTGAAGCTAAAG 50
> Ahg927338 jgi|Araly1|927338|scaffold_202899.1
Length=752
Score = 865 bits (468), Expect = 0.0
Identities = 635/715 (89%), Gaps = 14/715 (2%)
Strand=Plus/Plus
Query 148 ATGGGAGATAGTCAGTACTCGTTTTCTCTCACCACTTTCAGCCCATCTGGTAAGCTGGTG 207
||||| || |||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 24 ATGGGGGACAGTCAGTACTCGTTTTCTCTCACCACCTTCAGCCCATCAGGGAAGCTGGTT 83
Query 208 CAGATAGAACATGCCCTTACAGCTGTTGGATCTGGCCAAACATCTTTAGGG-ATTAAAGC 266
||||||||||||||||| |||||||||||||| |||||||||||| | ||| ||||||||
Sbjct 84 CAGATAGAACATGCCCTAACAGCTGTTGGATCAGGCCAAACATCTCT-GGGAATTAAAGC 142
Query 267 TTCTAATGGAGTTGTCATTGCAACTGAAAAG-AAGTTGCCTTCTAT-TCTGGTTGATGAA 324
||| |||||||||||||||||||| |||||| || || ||||| || | |||||||||||
Sbjct 143 TTCAAATGGAGTTGTCATTGCAACGGAAAAGAAACTT-CCTTCAATAT-TGGTTGATGAA 200
Query 325 GCATCTGTTCAAAAAATTCAGCATTTGACTCCTAATATTGGAGTTGTTTACAGTGGCATG 384
|| ||||||||||| ||||||||||||||||| || |||||| |||||||||||| |||
Sbjct 201 GCTTCTGTTCAAAAGATTCAGCATTTGACTCCCAACATTGGAACTGTTTACAGTGGTATG 260
Query 385 GGTCCTGATTTTCGAGTTCTTGTTAGGAAGAGTAGGAAACAGGCTGAGCAATATCTTCG- 443
||||||||||| ||||||||||| | ||||||||||| ||||||||||||||||| ||
Sbjct 261 GGTCCTGATTTCCGAGTTCTTGTGCGAAAGAGTAGGAAGCAGGCTGAGCAATATCTCCGA 320
Query 444 TCTGTACAAAGAACCCATCCCTGTTACCCAACTTGTAAGGGAAACCGCTACTGTTATGCA 503
| ||||||| ||||||||||| ||||| ||||||||||||||||| || || || |||||
Sbjct 321 T-TGTACAAGGAACCCATCCCCGTTACTCAACTTGTAAGGGAAACTGCCACGGTGATGCA 379
Query 504 AGAGTTTACTCAATCGGGAGGTGTTAGGCCTTTCGGGGTTTCCT-TGCTGGTGGCTGGAT 562
|||||| ||||||||||| |||||||||||||| || |||| || | ||||||||||| |
Sbjct 380 AGAGTTCACTCAATCGGGTGGTGTTAGGCCTTTTGGAGTTT-CTCTACTGGTGGCTGGGT 438
Query 563 ATGATGACAAGGGTCCACAATTGTATCAGGTGGATCCATCTGGCTCTTATTTCTCCTGGA 622
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||
Sbjct 439 ATGATGACAAGGGTCCACAACTGTATCAAGTGGATCCATCTGGCTCTTATTTCTCATGGA 498
Query 623 AAGCTTCAGCCATGGGGAAGAACGTTTCTAATGCAAAAACCTTCCTTGAGAAAAGGTACA 682
||||||| || ||||| ||||| ||||| |||||||| || || |||||||| |||||||
Sbjct 499 AAGCTTCTGCAATGGGAAAGAATGTTTCGAATGCAAAGACGTTTCTTGAGAAGAGGTACA 558
Query 683 CAGAAGACATGGAACTTGACGATGCCATTCACACAGCGATACTGACATTGAAAGAAGGCT 742
| ||||| ||||||||||| |||||||||||||| || ||| |||||||||| ||||| |
Sbjct 559 CTGAAGATATGGAACTTGATGATGCCATTCACACGGCAATATTGACATTGAAGGAAGG-T 617
Query 743 TT-GAGGGAGAGATCTCAAGCAAAAATATTGAAATTGGCAAAATCGGTGCTGACAAAGTT 801
|| |||||||| ||||| |||||||| || || |||||||||||||||||||||||||||
Sbjct 618 TTCGAGGGAGAAATCTCGAGCAAAAACATCGAGATTGGCAAAATCGGTGCTGACAAAGTT 677
Query 802 TTCAGGGTACTAACACCAGCAGAGATCGATGATTACCTTG-CTGAAGTCGAGTAA 855
|||||||| |||||||||||||| |||||||||||| ||| ||||||| ||||||
Sbjct 678 TTCAGGGTGCTAACACCAGCAGAAATCGATGATTAC-TTGGCTGAAGTAGAGTAA 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39419096178
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5