BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16490.1
Length=1180
Score E
Sequences producing significant alignments: (Bits) Value
Ahg334927 jgi|Araly1|334927|fgenesh1_pg.C_scaffold_1001492 1314 0.0
Ahg477086 jgi|Araly1|477086|fgenesh2_kg.2__2216__AT1G79180.1 174 1e-42
> Ahg334927 jgi|Araly1|334927|fgenesh1_pg.C_scaffold_1001492
Length=831
Score = 1314 bits (711), Expect = 0.0
Identities = 792/831 (95%), Gaps = 6/831 (1%)
Strand=Plus/Plus
Query 152 ATGGGCAAAGGAAGAGCACCATGTTGTGACAAAACCAAAGTGAAGAGAGGACCATGGAGC 211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGCAAAGGAAGAGCACCATGTTGTGACAAAACCAAAGTGAAGAGAGGACCATGGAGC 60
Query 212 CATGATGAAGACTTGAAACTCATCTCTTTCATTCACAAGAATGGTCATGAGAATTGGAGA 271
|| ||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 61 CAAGATGAAGACTTCAAACTCATCTCTTTCATTCACAAGTATGGTCATGAGAACTGGAGA 120
Query 272 TCTCTCCCAAAGCAAGCTGGATTGTTGAGGTGTGGCAAGAGTTGTCGTCTGCGATGGATT 331
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 121 TCTCTCCCAAAGCAAGCTGGATTGTTGAGGTGTGGCAAGAGTTGTCGTCTACGATGGATT 180
Query 332 AATTACCTCAGACCTGATGTGAAACGTGGCAATTTCAGTGCAGAGGAAGAAGACACCATC 391
||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 181 AATTACCTCAGACCTGATGTGAAACGTGGCAATTTCACCGCAGAGGAAGAAGAAACCATC 240
Query 392 ATCAAACTTCACCAGAGCTTTGGTAACAAGTGGTCGAAGATTGCTTCTAAGCTGCCTGGA 451
|| ||||||||||||||||||||||||||||||||||||||||||||||| || || |||
Sbjct 241 ATTAAACTTCACCAGAGCTTTGGTAACAAGTGGTCGAAGATTGCTTCTAAACTTCCGGGA 300
Query 452 AGAACAGACAATGAGATCAAGAATGTGTGGCATACACATCTCAAGAAAAGATTGAGCTCG 511
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAACAGACAATGAGATCAAGAATGTGTGGCATACACATCTCAAGAAAAGATTGAGCTCA 360
Query 512 GAAACTAACCTTAATGCCGATGAAGCGGGTTCAAAAGGTTCTTTGAATGAAGAAGAGAAC 571
||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 361 AAAACTAACCTTAATGTCGATGAAGCGGCTTCAAAAGGTTCTTTGAACGAAGAAGAGAAC 420
Query 572 TCTCAAGAGTCATCTCCAAATGCTTCAATGTCTTTTGCTGGTTCCAACATTTCAAGCAAA 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCAAGAGTCATCTCCAAATGCTTCAATGTCTTTTGCTGGTTCCAACATTTCAAGCAAA 480
Query 632 GACGATGATGCACAGATAAGTCAAAT---GTTTGAGCACATTCTAACTTATAGCGAGTTT 688
||||||||||||||||||||||||| ||||||||| |||||||||| |||||| |||
Sbjct 481 GACGATGATGCACAGATAAGTCAAAAAACGTTTGAGCATATTCTAACTTTTAGCGACTTT 540
Query 689 ACGGGGATGTTACAAGAGGTAGACAAACCAGAGCTGCTGGAGATGCCTTTTGATTTAGAT 748
|||| |||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||
Sbjct 541 ACGGAGATGCTACAAGAGGTAGACAAACCAGAGCTCCTGGAGATGACTTTTGATATAGAT 600
Query 749 CCTGACATTTGGAGTTTCATAGATGGTTCAGACTCAT--T-CCAACAACCAGAGAACAGA 805
|| ||||| |||||||||||||||||||||||||||| | ||||||||| |||||||||
Sbjct 601 CCAGACATCTGGAGTTTCATAGATGGTTCAGACTCATCATTCCAACAACCTGAGAACAGA 660
Query 806 GCTCTTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTTAAGCACCTGGAAAGCGAA 865
||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||
Sbjct 661 GCTCTTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTCAAGCACCTGGAATGCGAA 720
Query 866 CTCGGGTTAGAAGAAAACGATAACcaacaacaacaacaacaGCATAAACAGGGAACAGAA 925
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 CTCGGGTTAGAAGAAAACGATAACCAACAACAACAACAACAGCATAAACAGGGAACAGAA 780
Query 926 GATGAACATTCATCATCACTCTTGGAGAGTTACGAGCTCCTCATACATTAA 976
|||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 781 GATGAAAATTCATCATCACTCTTGGAGAGTTACGAGCTCCTGATACATTAA 831
> Ahg477086 jgi|Araly1|477086|fgenesh2_kg.2__2216__AT1G79180.1
Length=997
Score = 174 bits (94), Expect = 1e-42
Identities = 233/297 (78%), Gaps = 22/297 (7%)
Strand=Plus/Plus
Query 701 CAAGAGGTAGACAAACCAGAGCTGCTGGAGATGCCTTTTGATTTAGATCCTGACATTTGG 760
||||||||||||||||| || ||||||||||| |||||||||| ||||||||||||||||
Sbjct 598 CAAGAGGTAGACAAACCCGATCTGCTGGAGATACCTTTTGATTCAGATCCTGACATTTGG 657
Query 761 AGTTTCATAGATGGTTCAGACT-CA-TTCCAA-CA-ACCAG---A-GAAC-AGAGC-TC- 809
|||||| ||||| |||| ||| || | | || | | ||| | | | ||| | |
Sbjct 658 AGTTTCTTAGATACTTCAAACTCCACTGCAAATGAGAACAGCTCAGGTTCAAGAACAACA 717
Query 810 -TTCAAGAGTCTGAAGAAGATGAAGTTGATAAATGGTTTAAGCACCTGGAAAGCGAACTC 868
|||||||||| || || || ||| | |||||||| |||||||||||||||||||||
Sbjct 718 GAAGAAGAGTCTGATGAGGAAGAGGTTAAGAAATGGTTCAAGCACCTGGAAAGCGAACTC 777
Query 869 GGGTTAGAAGAAAACGATAACcaacaacaaca-acaacaGC-AT-A-AACAGGGAACAGA 924
|||||||||||| | ||| | || |||||||| | ||||| | | |||| || |||
Sbjct 778 GGGTTAGAAGAAGATGATGATCAGCAACAACATA-AACAGGGAACACAACAC--AA-AGA 833
Query 925 AGATGAA-CATTCATCATCACTCTTGGAGAGTTACGAGCTCCTCATACATTAATGAA 980
||| ||| ||| |||| ||||| ||| ||| ||||||||| | |||||||||||||
Sbjct 834 AGAAGAATCAT-CATCGTCACTGTTGAAGACCTACGAGCTCATGATACATTAATGAA 889
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44031969135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5