BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16510.1
Length=872
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471849 jgi|Araly1|471849|fgenesh2_kg.1__1803__AT1G16510.1 850 0.0
> Ahg471849 jgi|Araly1|471849|fgenesh2_kg.1__1803__AT1G16510.1
Length=712
Score = 850 bits (460), Expect = 0.0
Identities = 583/640 (91%), Gaps = 17/640 (3%)
Strand=Plus/Plus
Query 84 TGTACTCTCTCCTCAATGCTCTCGTCATAATCTTTCCATGtcttct-tctctctata-ta 141
||||||||||||||||||||||||||||| |||||||||||||||| ||| | |||| ||
Sbjct 1 TGTACTCTCTCCTCAATGCTCTCGTCATAGTCTTTCCATGTCTTCTCTCTATATATAGTA 60
Query 142 tattacttaactctttctca----ctctctctaatttt-aaatttatctatCATTAGTTT 196
|||||||||||||||||||| |||||||||||||| |||| ||||| ||||||||||
Sbjct 61 TATTACTTAACTCTTTCTCACTCTCTCTCTCTAATTTTGAAATATATCTCTCATTAGTTT 120
Query 197 AAACCGCCGGAG----AACAAAAAATGAAGCATCTCATCCGCCGCCTCTCTAGAGTCGCC 252
|||||||||||| || |||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 AAACCGCCGGAGACAAAAAAAAAAATGAAGCATCTCATCCGTCGCCTCTCTAGAGTCGCC 180
Query 253 GACTCATCCTCCGAATTCTCCATCCGCCGTTCCACCTCCTCCTTCCGCAACCGTCGCGGT 312
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 181 GACTCATCCTCCGAATTCTCCATCCGCCGTTCCACCTCATCCTTCCGCAACCGTCGCGGT 240
Query 313 CACCATCGTCTCCACGCGCCGCCGCCTCCGTGGTCAATATGTCCAGCTAGAAGAGTCAAC 372
|| || |||||||||||||||||||||| ||||||||| | ||| || ||||||||||||
Sbjct 241 CATCACCGTCTCCACGCGCCGCCGCCTCAGTGGTCAATTTATCCGGCGAGAAGAGTCAAC 300
Query 373 ACCGTCCCCGCTGGTCACGTACCTGTCTACGTCGGCGAGGAGATGGAGAGGTTCGTGGTT 432
||||||||||| |||||||| ||||| ||||||||||| |||||||||| ||||||||||
Sbjct 301 ACCGTCCCCGCCGGTCACGTGCCTGTATACGTCGGCGAAGAGATGGAGAAGTTCGTGGTT 360
Query 433 AGCGCAGAGCTTATGAACCACCCGATCTTCGTTGGTTTGCTAAACCGATCCGCTCAAGAA 492
||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||
Sbjct 361 AGCGCGGAGCTTATGAACCATCCGATCTTCGTCGGTTTGCTTAACCGATCCGCTCAAGAA 420
Query 493 TACGGTTACGCTCAGAAAGGAGTTCTTCATATCCCTTGCCACGTCATCGTGTTTGAGCGC 552
||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||
Sbjct 421 TACGGTTACGCTCAGAAAGGAGTTCTTCATATCCCCTGCCACGTCCTCGTGTTCGAGCGC 480
Query 553 GTGGTGGAAACGCTCCGGTTGGGAGGGTTTGAAGGGTCCGGTGATCTAGAGAATCTT-GT 611
|||||||||||||||||| |||||| || |||| ||||||||| || || || || ||
Sbjct 481 GTGGTGGAAACGCTCCGGCTGGGAGCATTCGAAGAGTCCGGTGAGGTACAGGAT-TTCGT 539
Query 612 GGCTTCGTTGCTCTCCGGTGATGAGTTGATACCTGAAACTACAGAGTAGCTTTTGAAGAA 671
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 540 GGCTTCGTTGCTCTCCGGTGATGAATTGATACCTGAAACTACAGAGTAGCTTTTCAAGAA 599
Query 672 GAAT---CCAAATCGGCGATTTGATAttttctctg-tttt 707
||| |||||||||||||||||||||||||| | ||||
Sbjct 600 TAATAATCCAAATCGGCGATTTGATATTTTCTCCGATTTT 639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32290110699
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5