BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16515.1

Length=265
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg920557 jgi|Araly1|920557|scaffold_101838.1                        200    4e-51


> Ahg920557 jgi|Araly1|920557|scaffold_101838.1
Length=293

 Score =  200 bits (108),  Expect = 4e-51
 Identities = 193/230 (84%), Gaps = 21/230 (9%)
 Strand=Plus/Plus

Query  1    GTTATCTTCTTGCTCTGATTATTTTTGTCTTTCTCAGATTCTTCGCTATTTTCCAGAATA  60
            |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct  77   GTTATCTTCTTGCTCTGATTATATTTGTCTTTCTTAGATTCTTCGCTATTTTCCAGAATA  136

Query  61   TCTCACCAGAT-AATCGAGTCGGCGAGCCAAGAACGGC-ATCG-TTTATGAGGTTTAGTG  117
             || |  || | |||| ||||| |||||| |||||| | | || ||| ||||||||| ||
Sbjct  137  -CTGA--AG-TGAATCAAGTCGTCGAGCCCAGAACGACGA-CGCTTT-TGAGGTTTACTG  190

Query  118  ATACACAACAAGCTCAGGGAGATTTTAATCTAACTTTCTCTGGTGTTTTCTTAGAATCTG  177
            ||     ||||    |||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct  191  AT-----ACAA----AGGGAGATGTGAATGTAACTTTCTCTGGTGTTTTCTTAGAATCTG  241

Query  178  TAATCAAAGATGTCGCTGA-AATTGttttttagttttattttGTAGTATT  226
            ||||||||||| || |||| |||  |||| |||||| |||||||| ||||
Sbjct  242  TAATCAAAGATATCACTGATAATC-TTTTGTAGTTT-ATTTTGTATTATT  289



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9241559162


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5