BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16520.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471850 jgi|Araly1|471850|fgenesh2_kg.1__1804__AT1G16520.1 1808 0.0
> Ahg471850 jgi|Araly1|471850|fgenesh2_kg.1__1804__AT1G16520.1
Length=1214
Score = 1808 bits (979), Expect = 0.0
Identities = 1129/1198 (94%), Gaps = 24/1198 (2%)
Strand=Plus/Plus
Query 1 AATCGGACAATTCCAGAGCTAAAAAACCCTAATCTTCTCGGGCTTGTCATCTCCAAAATT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AATCGGACAATTCCAGAGCT-AAAAACCCTAATCTTCTCGGGCTTGTCATCTCCAAAATT 59
Query 61 CAGGGTTCAATTTCTTCACCATAGAAGATATAGCGTTATCTCCGGCGTCTAAGGGGACTT 120
||| |||||||| ||||||||||||||| | |||||||||||||||| |||| || ||
Sbjct 60 TGGGGCTCAATTTC-TCACCATAGAAGATAGAACGTTATCTCCGGCGTCGAAGGAGATTT 118
Query 121 TAGGGACATTCTTGTGGTGGAGAAATGGGAGACGACCAGCTAGATTTCGAGCT-CCCAGA 179
||||| |||||||||||||||||||||||||||||||||||||||||||| || ||| ||
Sbjct 119 TAGGGGCATTCTTGTGGTGGAGAAATGGGAGACGACCAGCTAGATTTCGAACTACCC-GA 177
Query 180 AGAGGTTTTGTCGGTGATTCCGATGGACCCTTTTGAGCAGCTGGATCTCGCGAGGAAGAT 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGAGGTTTTGTCGGTGATTCCGATGGACCCTTTTGAGCAGCTGGATCTCGCGAGGAAGAT 237
Query 240 TACATCAATGGCGATAGCTTCAAGGGTGTCGAATCTGGACTCTGAGGTGGTTGAATTGAG 299
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 238 TACATCGATGGCGATAGCTTCAAGGGTGTCGAATCTGGACTCTGAGGTGGTGGAATTGAG 297
Query 300 ACAGAAGCTTCTGG-GTAAGGAAAGTGTTGTCCGTGAGCTTGAGGAGAAAGCGTCTCGCC 358
|||||||||||||| | ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 298 ACAGAAGCTTCTGGAG-AAGGAAAGTGTTGTCCGTGAGCTTGAGGAGAAATCGTCTCGCC 356
Query 359 TGGAGAGAGACTGCCGCGAGGCTGATTCGAGATTGAAGGTCGTTCTCGAAGATAATATGA 418
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 357 TGGAGAGAGACTGCCGCGAGGCTGATTCGAGATTGAAGGTCGTCCTCGAGGATAATATGA 416
Query 419 ACCTGACAAAGGAGAAGGATTCACTGGCAATGACTGTAACGAAACTCACCCGTGATTTGG 478
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 417 ACCTGACAAAGGAGAAGGATTCACTGGCAACGACTGTAACGAAACTCACCCGTGATTTGG 476
Query 479 CTAAGCTGGAGACATTCAAGCGGCAGTTAATCAAATCCCTGAGCGATGAGAGTGGTCCGC 538
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CTAAGTTGGAGACGTTCAAGCGGCAGTTAATCAAATCCCTGAGCGATGAGAGTGGTCCGC 536
Query 539 AAACAGAACCTGTTGATATTAGGACATGCGACCAGCCAGGATC--ATAT-CCAGGCAAAG 595
||||||||||||||||||||||||||||||||||| ||| || | | ||| ||| |
Sbjct 537 AAACAGAACCTGTTGATATTAGGACATGCGACCAGTCAGT-TCCCAAAGACCATGCA--G 593
Query 596 ATGGAAGGATCAATGCACACTCAATTAAACAA-GCTTACAGTGGATCTACAGACAC-GAA 653
||| ||||| ||||||||||||||| |||| | ||||||||||||||||||||| | |||
Sbjct 594 ATGAAAGGACCAATGCACACTCAAT-AAACCATGCTTACAGTGGATCTACAGAC-CTGAA 651
Query 654 CAATCCAGTTGTTGAAGCTTCAAAATACACTGGAAACAAATTTTCAATGACATCATACAT 713
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 652 CAATCCAATTGTTGAAGCTTCAAAATACACTGGAAACAAATTTTCAATGACACCATACAT 711
Query 714 ATCTCCACGTCTTACCCCAACCGCAACACCAAAGATCATCTCCACAAGTGTGTCTCCTCG 773
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 712 CTCTCCACGTCTTACCCCAACCGCAACACCAAAGATCATCTCCACAAGTGTATCTCCTCG 771
Query 774 AGGCTATTCTGCAGCAGGTTCTCCTAAAAGAACATCAGGTGCAGTTTCTCCCACAAAGGC 833
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 772 AGGATATTCTGCAGCAGGTTCTCCTAAAAGAACATCAGGTGCAGTTTCTCCCAAAAAGGC 831
Query 834 AACACTCTGGTACCCGTCAAGTCAGCAATCATCGGCTGCGAATTCTCCTCCTCGCAACCG 893
||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 832 AACACTCTGGTACCCGTTAAGTCAGCAATCATCGGCTGCAAATTCCCCTCCTCGCAACCG 891
Query 894 CACACTCCCAGCTCGTACACCGCGGATGGATGGTAAAGAATTCTTCCGGCAAGCCAGGAG 953
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 892 CACACTCCCAGCTCGTACACCTCGGATGGATGGTAAAGAATTTTTCCGGCAAGCCAGGAG 951
Query 954 CCGATTATCCTATGAACAATTCAGTTCCTTCTTAGCTAACATCAAAGAGCTCAACGCCCA 1013
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 952 CCGATTATCCTATGAACAATTCAGTTCCTTCCTAGCTAACATCAAGGAGCTCAACGCCCA 1011
Query 1014 GAAGCAAACCCGAGAGGAAACTCTGAGGAAAGCAGATGAGATATTTGGGGAAGAGAACAA 1073
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1012 GAAGCAAACCCGAGAGGAAACTCTGAGGAAAGCAGATGAGATATTTGGGGAAGATAACAA 1071
Query 1074 AGATCTTTATTTATCTTTCCAAGGTCTCCTTAACAGAAACATGCGTTAAACTTT--CATA 1131
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||
Sbjct 1072 AGATCTTTATTTATCTTTCCAAGGTCTCCTTAACAGAAACATGCGTTGAACTTTTTCATA 1131
Query 1132 AGCCGTTATCTTGAATC-TGGGCCAATGTGATAGGATGGATATTAACCATTGTAGTAT 1188
|||||||||||| |||| ||| |||| |||||||||| | | ||||||||||||||
Sbjct 1132 AGCCGTTATCTTTAATCCTGG-CCAACGTGATAGGATC--T-T-AACCATTGTAGTAT 1184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5