BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G16530.1

Length=642
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg911457 jgi|Araly1|911457|Al_scaffold_0001_1711                    706    0.0  


> Ahg911457 jgi|Araly1|911457|Al_scaffold_0001_1711
Length=495

 Score =  706 bits (382),  Expect = 0.0
 Identities = 461/499 (92%), Gaps = 5/499 (1%)
 Strand=Plus/Plus

Query  45   ATGAGACAAAAGGGTCACAGACACGGAAGAACAGTATCGCCTTGTGCCGGCTGTAAACTT  104
            ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1    ATGAGACAAAAGGCTCACAGACACGGAAGAACAGTATCGCCTTGTGCCGGCTGTAAGCTT  60

Query  105  CTCCGGCGAAAATGTGTGAAAGATTCATGCGTCTTTGCTCCGTATTTTCCGGCCAAAGAG  164
            ||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||
Sbjct  61   CTCCGGCGAAAATGTGTGAAAGA-T--TGCGTCTTTGCTCCGTATTTTCCGGCCAAAGAG  117

Query  165  CCTTACAAGTTTGCCATTGTCCACAAGATTTTTGGTGCTAGTAATGTCAATAAGATGTTG  224
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  118  CCTTACAAGTTTGCCATTGTCCACAAGATTTTTGGTGCTAGTAATGTCAATAAGATGTTG  177

Query  225  CAGGAGCTGTCGGAGAACCACCGGAGCGACGCCGTGGATTCGATGGTGTACGAGGCCAAC  284
            |||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||
Sbjct  178  CAGGAGCTGTCGGAGAACCACCGGAGCGACGCTGTTAATTCGATGGTGTACGAGGCCAAC  237

Query  285  GCGAGGATACAAGATCCTGTGTATGGATGTGTAGGGACAATTTCGTCGTTACACAGACAA  344
            |||||| | ||||||||||| |||||||||||| |||||||||| |||||||||||||||
Sbjct  238  GCGAGGGTGCAAGATCCTGTATATGGATGTGTAAGGACAATTTCTTCGTTACACAGACAA  297

Query  345  CTGGAAACTCTCCAAACTCAGCTCGCTTTTGCTCAAGCCGAGTTGATTCATATAAGGACG  404
            || || ||||||||||||||||| ||||| ||||| |||||| ||| |||||| ||||||
Sbjct  298  CTCGAGACTCTCCAAACTCAGCTTGCTTTCGCTCAGGCCGAGCTGAATCATATCAGGACG  357

Query  405  CTCCACCGTATTCATACCAAACCCCCGCCGTACACGGCAAGTACCGTTACTTTCCCCTCG  464
            |||||||||||| | || |||||||| |||||| |||| ||||| ||||||||||| |||
Sbjct  358  CTCCACCGTATTGACACTAAACCCCCACCGTACGCGGCGAGTACTGTTACTTTCCCGTCG  417

Query  465  AACAAAGACTTCTACAGTGACATCGACATGGCTGTTGCGTAT-ACGGATGATGCCGGAGA  523
            ||||||||||||||||||||| ||||||||||| ||| |||| | ||||| |||| ||||
Sbjct  418  AACAAAGACTTCTACAGTGACGTCGACATGGCTTTTGTGTATGA-GGATGGTGCCAGAGA  476

Query  524  CTTCCTTTGGTCTTGCTAG  542
            || ||||||||| ||||||
Sbjct  477  CTCCCTTTGGTCATGCTAG  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23521839789


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5