BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G16560.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg471855 jgi|Araly1|471855|fgenesh2_kg.1__1809__AT1G16560.3 2050 0.0
Ahg490363 jgi|Araly1|490363|fgenesh2_kg.6__3497__AT1G16560.3 1125 0.0
> Ahg471855 jgi|Araly1|471855|fgenesh2_kg.1__1809__AT1G16560.3
Length=1628
Score = 2050 bits (1110), Expect = 0.0
Identities = 1310/1405 (93%), Gaps = 20/1405 (1%)
Strand=Plus/Plus
Query 51 AGATGGCAGTCCACTACTGGACAGCCCTGTTTCTATTGTTGCCATGCCTTTTCTGTATTT 110
|||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 235 AGATGGCATTCCACTACTGGACAGCCCTGTTTCTATTGTTGTCATGCCTTTTCAGTATTT 294
Query 111 CAAATGCTAGTGCTGGCGATGCTGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGA 170
||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 295 CAAATTCTAGTGCTGGCGATGCCGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGA 354
Query 171 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTC 230
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 355 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCGGATGGTGGTC 414
Query 231 CATGGTACATCCAAGAACCTTTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 290
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 415 CATGGTACATACAAGAACCTCTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 474
Query 291 GCCGTTATCAATGTATGGTTAATAGAGAGACTGAACGGGAAACTCTCGGTCAAGCCCCAG 350
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
Sbjct 475 GCCGTTATCAATGTATGGTTAATAGAGAGAGGGAACGGGAAACTCTCGGCCAAGCCCCTG 534
Query 351 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 594
Query 411 TTGCTTTCTCTGTACTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 470
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTGCGTTCTCTGTGCTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 654
Query 471 TGATCTACTATAAGTTGCCTCTGAAACAAGATAGGACAGCGTACTATGAATACGTTGGTT 530
| |||||||||| ||||||||||||||||||| | ||||||||||||||||||| ||||
Sbjct 655 CGCTCTACTATAAATTGCCTCTGAAACAAGATAAGTCAGCGTACTATGAATACGTCGGTT 714
Query 531 TGTGGCATATCTACGGTCTCCTGTCCATGAACTCTTGGTTCTGGAGTGCTGTTTTCCACA 590
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 715 TGTGGCATATCTACGGTCTTCTGTCCATGAACTCTTGGTTCTGGAGTGCTGTTTTCCACA 774
Query 591 GCCGGGATGTTGACCTTACAGAGAGGTTGGACTACTCATCCGCAGTAG-CGATTCTCGGA 649
|||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||
Sbjct 775 GCCGGGATGTTGACCTCACAGAGAGGTTGGACTACTCATCCGCAGTAGCCG-TTCTCGGA 833
Query 650 TTCTCACTCATCTTAGCCATTTTACGAACATTTGATATTCGGGTTGAGGCTGCAAGGGTC 709
||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||
Sbjct 834 TTCTCACTCATCTTAGCCATTTTACGAACCTTTGATATTCGGGTCGAGGCTACAAGGGTT 893
Query 710 ATGGTATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTAC 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATGGTATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTAC 953
Query 770 AAACTCGACTATGGCTGGAACATGATTGTGTGTGTGGCAATGGGAGTCTCACAGCTTTTC 829
|||||||||||||| ||||||||||||||||||||| ||||||||||| | ||||||||
Sbjct 954 AAACTCGACTATGGTTGGAACATGATTGTGTGTGTGACAATGGGAGTCACTCAGCTTTTT 1013
Query 830 CTATGGGCAAGATGGGCCGCTGTCTCAAGCCACCCTTCTAATTGGAAACTTTGGGTGGTT 889
||||||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||
Sbjct 1014 CTATGGGCAAGATGGGCTGCTGTCTCGAGCCATCCTTCTAACTGGAAACTTTGGGTGGTT 1073
Query 890 GTGATAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 GTGATAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGC 1133
Query 950 TACTTCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGG 1009
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1134 TACTTCGATGCTCACTCGATTTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGG 1193
Query 1010 AGCTTCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACG 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 AGCTTCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACG 1253
Query 1070 AAGGCAAAGTGAGTCTCTTTGCTAAGTTTTACAAGGATTTTTATCCGACCATACGAGTAT 1129
|||||||||||||| |||| ||||| ||| | |||||||| ||| ||||| ||| | | |
Sbjct 1254 AAGGCAAAGTGAGT-TCTTCGCTAAATTTCAGAAGGATTTATATTCGACCGTACAAATTT 1312
Query 1130 GCA-GACACGAGG-GAAAAACAAAAGATGGAAATGGATTTAAACATCACGAAGAAGGCAG 1187
||| | ||| ||| |||||||||||| |||||||||||| || |||||||||||||| ||
Sbjct 1313 GCAAG-CAC-AGGAGAAAAACAAAAGGTGGAAATGGATTCAAGCATCACGAAGAAGGAAG 1370
Query 1188 AGTCTTTTGTTTAAAGCTAGCTGGTTTATGGATTCACAGGTTTCTTCAGttttttttATT 1247
||||||||||| ||||||||||||||| | |||| ||||||||| |||||| |||| ||
Sbjct 1371 AGTCTTTTGTTCAAAGCTAGCTGGTTTC-G-ATTCTCAGGTTTCTCCAGTTTATTTT-TT 1427
Query 1248 T-TATATTGTT-A--CATTAACTGTTGAATTTGCTTTGAGCCTTTCAGTGT-TTTTCTTT 1302
| | ||||||| | |||||||||| ||||||||||| ||||||||| |||||||
Sbjct 1428 TGT-TATTGTTTAAGCATTAACTGTGGAATTTGCTTTCAGCCTTTCACAAAATTTTCTT- 1485
Query 1303 GGCCTTACTTTTGGTTAAGAAAGATTTTGATATCATTTACTCATTCATACACAGACTCAT 1362
|||||||||||||||||| |||||||||||||||| |||| |||||||| |||||| |
Sbjct 1486 GGCCTTACTTTTGGTTAATTGAGATTTTGATATCATTCACTCGTTCATACAAAGACTCCT 1545
Query 1363 GCGAAACCATTTTG-AATTCAGATTCTGTCAATATTTTCGAGACAATCTTGTAATCTATA 1421
|| ||| ||||| | ||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1546 GCCAAATCATTTCGGAAT-CAGATTTTGTCAATATTT-CGAGACAATCTTGTAATCTATA 1603
Query 1422 GGATTTTGTATAAAAATTTGGATCT 1446
|||| |||| ||||||||||||||
Sbjct 1604 TGATTGTGTACAAAAATTTGGATCT 1628
> Ahg490363 jgi|Araly1|490363|fgenesh2_kg.6__3497__AT1G16560.3
Length=1319
Score = 1125 bits (609), Expect = 0.0
Identities = 779/857 (91%), Gaps = 27/857 (3%)
Strand=Plus/Plus
Query 595 GGATGTTGACCTTACAGAGAGGTTGGACTACTCATCCGCAGTAG-CGATTCTCGGATTCT 653
|||||||||||| ||||||||||||||||||||||| ||||||| || ||||||||||||
Sbjct 485 GGATGTTGACCTCACAGAGAGGTTGGACTACTCATCTGCAGTAGCCG-TTCTCGGATTCT 543
Query 654 CACTCATCTTAGCCATTTTACGAACATTTGATATTCGGGTTGAGGCTGCAAGGGTCATGG 713
||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| ||||
Sbjct 544 CACTCATCTTAGCCATTTTACGAACCTTTGATATTCGGGTCGAGGCTACAAGGGTTATGG 603
Query 714 TATCCGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTACAAAC 773
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TATCGGCTCCAATACTAGCTTTTGTAACCACCCACATACTCTACATAAACTTCTACAAAC 663
Query 774 TCGACTATGGCTGGAACATGATTGTGTGTGTGGCAATGGGAGTCTCACAGCTTTTCCTAT 833
|||||||||| |||||||||||||||||| |||||||||||||| | |||||||| ||||
Sbjct 664 TCGACTATGGTTGGAACATGATTGTGTGTATGGCAATGGGAGTCACTCAGCTTTTTCTAT 723
Query 834 GGGCAAGATGGGCCGCTGTCTCAAGCCACCCTTCTAATTGGAAACTTTGGGTGGTTGTGA 893
||||||||||||| |||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 724 GGGCAAGATGGGCTGCTGTCTCGAGCCATCCTTCTAACTGGAAACTTTGGGTGGTTGTGA 783
Query 894 TAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGCTACT 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 784 TAGCTGGAGGATTAGCCATGCTTCTAGAGATATATGATTTTCCTCCATATGAAGGATACT 843
Query 954 TCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGGAGCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 844 TCGATGCTCACTCGATCTGGCACGCTGCCACAATTCCCTTAACCATTCTCTGGTGGAGCT 903
Query 1014 TCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACGAAGG 1073
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 TCATTAGAGACGATGCTGAGTTCAGAACTTCCAGCCTCCTCAAGAAAACTAAGACGAAGG 963
Query 1074 CAAAGTGAGTCTCTTTGCTAAGTTTTACAAGGATTTTTATCCGACCATACGAGTATGCA- 1132
|||||||||| |||| ||||| ||| | |||||||| ||| ||||| ||| | | ||||
Sbjct 964 CAAAGTGAGT-TCTTCGCTAAATTTCAGAAGGATTTATATTCGACCGTACAAATTTGCAA 1022
Query 1133 GACACGAGG-GAAAAACAAAAGATGGAAATGGATTTAAACATCACGAAGAAGGCAGAGTC 1191
| |||| || |||||||| ||| |||||||||||| || |||||||||||||| |||| |
Sbjct 1023 G-CACG-GGAGAAAAACACAAGGTGGAAATGGATTCAAGCATCACGAAGAAGGAAGAGAC 1080
Query 1192 TTTTGTTTAAAGCTAGCTGGTTTATGGATTCACAGGTTTCTTCAGttttttttATTTTAT 1251
||||||||||||||||||||||| ||||||||||||||||||||||||| || |||| |
Sbjct 1081 TTTTGTTTAAAGCTAGCTGGTTT--GGATTCACAGGTTTCTTCAGTTTTTGTT-TTTT-T 1136
Query 1252 ATTGTTACATTAACTGTTGAATTTGCTTTGAGCCTTTCAGTGT-TTTTCTTTGGCCTTAC 1310
| || | || |||||||||||||||||||||| ||||||| ||||||||
Sbjct 1137 A-----AC-TG---TG--GAATTTGCTTTGAGCCTTTCAGAAAATTTTCTT-GGCCTTAC 1184
Query 1311 TTTTGGTTAAGAAAGATTTTGATATCATTTACTCATTCATACACAGACTCATGCGAAACC 1370
|||||||||| |||||||||||||||||||||||||||||| |||||| ||| ||| |
Sbjct 1185 TTTTGGTTAATTGAGATTTTGATATCATTTACTCATTCATACAAAGACTCCTGCCAAATC 1244
Query 1371 ATTTTG-AATTCAGATTCTGTCAATATTTTCGAGACAATCTTGTAATCTATAGGATTTTG 1429
|||| | ||| |||||| || |||||||| |||||||||||||||||||||| |||| ||
Sbjct 1245 ATTTCGGAAT-CAGATTATGACAATATTT-CGAGACAATCTTGTAATCTATATGATTGTG 1302
Query 1430 TATAAAAATTTGGATCT 1446
|| ||||||||||||||
Sbjct 1303 TACAAAAATTTGGATCT 1319
Score = 747 bits (404), Expect = 0.0
Identities = 442/461 (96%), Gaps = 0/461 (0%)
Strand=Plus/Plus
Query 51 AGATGGCAGTCCACTACTGGACAGCCCTGTTTCTATTGTTGCCATGCCTTTTCTGTATTT 110
||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct 25 AGATGGCAGTCCACTACTGGACATCCCTGTTTCTATTGTTGTCATGCCTTTTCAGTATTT 84
Query 111 CAAATGCTAGTGCTGGCGATGCTGATCCAGATTACAGGACATGTGTTTCAGAATGTGAGA 170
|||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 85 CAAATGCTAGTGCTGGCGATGCCGATCCAGATTACAGGACATGCATTTCAGAATGTGAGA 144
Query 171 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTC 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 TAAGCGGTTGTGTTGGACAACTTTGCTTTCCTCAGTGCAATTCTTCATCCGATGGTGGTC 204
Query 231 CATGGTACATCCAAGAACCTTTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 290
|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 205 CATGGTACATACAAGAACCTCTGTATTTACAATGGAAAAAATGGGGTTGTCAAGGTGATT 264
Query 291 GCCGTTATCAATGTATGGTTAATAGAGAGACTGAACGGGAAACTCTCGGTCAAGCCCCAG 350
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 265 GCCGTTATCAATGTATGGTTAATAGAGAGAGAGAACGGGAAACTCTTGGTCAAGCCCCGG 324
Query 351 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 TCAAGTACCATGGTAAATGGCCCTTCAAGCGTGTACTTGGGATTCAGGAGCCTGCTTCTG 384
Query 411 TTGCTTTCTCTGTACTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 470
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 TTGCGTTCTCTGTGCTCAACCTAGCAATGCATTTCCATGGTTGGCTTTCCTTTTTCATCA 444
Query 471 TGATCTACTATAAGTTGCCTCTGAAACAAGATAGGACAGCG 511
| |||||||||| ||||||||||||||||||| | |||||
Sbjct 445 CGCTCTACTATAAATTGCCTCTGAAACAAGATAAGTCAGCG 485
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5